Boutique Hotels in Japan from ￥20,240
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on Japan Boutique Hotels
Our top choices for Japan boutique hotels
9.4 out of 10, Exceptional, (329 reviews)
"The room was incredible, the staff were so welcoming and attentive, it was truly a magical experience. Dinner at the restaurant is a must!"
John
The price is ￥22,255
￥26,928 total
Jan 25 - Jan 26
9.6 out of 10, Exceptional, (1,006 reviews)
"Beautiful hotel and amazing staff "
Veronica Esther
The price is ￥32,975
￥39,901 total
Feb 1 - Feb 2
9.8 out of 10, Exceptional, (1,004 reviews)
"Amazing hidden gem in Tokyo. They make you feel like you’re staying at your own home. "
Hye Ryoung
The price is ￥74,770
￥94,584 total
Feb 23 - Feb 24
9.0 out of 10, Wonderful, (1,002 reviews)
"Excellent hotel"
Rodney
The price is ￥24,832
￥27,581 total
Jan 27 - Jan 28
9.4 out of 10, Exceptional, (1,003 reviews)
"Immaculate room conditions. Friendly and helpful staff. Excellent location with major transportation station nearby and lots of food and shopping options too."
Cho Kin William
The price is ￥112,000
￥142,080 total
Jan 31 - Feb 1
9.4 out of 10, Exceptional, (86 reviews)
"Fantastique service and food "
Young Seok
The price is ￥100,700
￥123,560 total
Feb 19 - Feb 20
10.0 out of 10, Exceptional, (28 reviews)
"Spent four days at Gagakuan, satisfied, although unexpected cold weather even in spring. Late sakura blooming, still managed to view some. Did not follow tour, rather venture on our own. Visited places of interest but unable to cover all due to insufficient time, maybe next time would to come again. "
Tony
9.8 out of 10, Exceptional, (1,082 reviews)
"Lovely stay!"
Matthew
The price is ￥34,860
￥46,131 total
Jan 26 - Jan 27
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in
Top Japan Hotel Reviews
Tokyo Bay Shiomi Prince Hotel
10/10 Excellent
Explore a world of travel with Expedia
- Urayasu Hotels
- Aparthotels in Osaka
- Tsukuba Hotels
- Kyoto Hotels
- Castles in Osaka
- Beach Hotels in Shirahama
- Cheap Hotels in Narita
- Sendai Hotels
- Ryokans in Hakone
- Narita Hotels
- Cheap Hotels in Hakone
- Hamamatsu Hotels
- Luxury Hotels in Tokyo
- Matsumoto Hotels
- Atami Hotels
- Luxury Hotels in Kyoto
- Nikko Hotels
- Romantic Hotels in Tokyo
- Yokosuka Hotels
- Ryokans in Hiroshima Prefecture
- Naha Hotels
- Ryokans in Osaka Prefecture
- Ryokans in Tokyo Prefecture
- Luxury Hotels in Okinawa
- Kyoto Prefecture Hotels
- Cheap Hotels in Hokkaido Prefecture
- Hachioji Hotels
- Fukui Hotels
- Hotels with Hot Tubs in Tokyo
- Beach Hotels in Chiba
- Aparthotels in Tokyo
- Scuba Diving Hotels in Okinawa Prefecture
- Hotels with Early Check-in in Kyoto
- Beach Hotels in Tokyo
- Hotels with Early Check-in in Narita
- Ski Hotels in Yuzawa
- Cheap Hotels in Fukuoka
- Palaces in Tokyo Prefecture
- Capsule Hotels in Tokyo Prefecture
- Hotels with Early Check-in in Tokyo Prefecture
- Osaka Hotels
- Chiba Hotels
- Toyama Hotels
- Beppu Hotels
- Niigata Hotels
- Fukuoka Hotels
- Adults Only Resorts & in Tokyo
- Ginzan Onsen Hotels
- Castles in Kyoto Prefecture
- Osaka Hotels
- Family Hotels in Tokyo
- Hostels in Tokyo
- Business Hotels in Tokyo
- Cheap Hotels in Osaka Prefecture
- Cheap Hotels in Sapporo
- Yokkaichi Hotels
- Ryokans in Fukuoka Prefecture
- Suzuka Hotels
- Ryokans in Ginzan Onsen
- Ski Hotels in Sapporo
- Cheap Hotels in Fukuoka Prefecture
- Akita Hotels
- Luxury Hotels in Osaka
- Hotels with Early Check-in in Tokyo
- Ski Hotels in Hakuba
- Hiroshima Hotels
- Resorts & Hotels with Spas in Tokyo
- Castles in Tokyo Prefecture
- Ryokans in Kyoto Prefecture
- Ryokans in Kyoto
- Hotels with Bars in Tokyo
- Aparthotels in Osaka
- Utsunomiya Hotels
- Boutique Hotels in Tokyo
- Cheap Hotels in Tokyo
- Scuba Diving Hotels in Okinawa
- Capsule Hotels in Osaka Prefecture
- Kumamoto Hotels
- Sapporo Hotels
- Tokyo Hotels
- Hotels with a Pool in Tokyo
- Nagoya Hotels
- Cheap Hotels in Tokyo Prefecture
- Yokohama Hotels
- Kamakura Hotels
- Cheap Hotels in Osaka
- Cheap Hotels in Yokohama
- Hakone Hotels
- Cheap Hotels in Nagano Prefecture
- Tokyo Prefecture Hotels
- Hotels with Early Check-in in Osaka Prefecture
- Cheap Hotels in Kyoto
- Ski Hotels in Tokyo
- Oita Hotels
- Saitama Hotels
- Capsule Hotels in Tokyo