The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern office space with a reception desk, seating area, and plants.

A modern lounge area with a blue sofa, yellow armchair, and a coffee table with a book and a potted plant.

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Dylan

￥9,522

￥10,831 total

includes taxes & fees

Nov 16 - Nov 17

A rooftop pool with lounge chairs and a city skyline in the background.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

A modern lobby with seating areas, large windows, and indoor plants.

A high-rise building with a view of a harbor and sailboats.

2. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Victor

￥28,331

￥44,449 total

includes taxes & fees

Nov 17 - Nov 18

A high-rise hotel with multiple floors, a prominent sign at the top, and a well-lit facade.

A spacious bar/lounge area with leather seating, a bar counter, and hanging pendant lights.

A modern lobby with seating areas, a reception desk, and a sign indicating elevators to parking and a street.

A spacious lobby with a high ceiling, leather seating, multiple tables, and a large flat-screen TV mounted on the wall.

3. Marriott Vacation Club®, San Diego

1.8 km from San Diego Natural History Museum

Veronica Dangerfield

￥22,755

￥26,382 total

includes taxes & fees

Nov 3 - Nov 4

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A fountain with multiple water jets in a courtyard with seating and potted plants.

A luxurious room with ornate chandeliers, a grand staircase, and plush seating.

A luxurious lobby with a grand chandelier, plush blue sofas, and ornate decor.

4. Westgate Hotel

2.3 km from San Diego Natural History Museum

Arlet

￥22,120

￥31,143 total

includes taxes & fees

Nov 8 - Nov 9

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A large swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a building with a striped facade.

A checkered floor with round tables and chairs, a patterned ceiling, and large windows.

A luxurious interior with a large chandelier, patterned sofas, and a view of a cityscape through a large window.

5. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Laurie

￥36,237

￥41,652 total

includes taxes & fees

Nov 16 - Nov 17

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

A multi-story hotel with a prominent 'PENDR' sign, large windows, and a corner entrance.

A bar area with a high ceiling, patterned wall, and seating.

An outdoor dining area with wicker furniture and potted plants.

6. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Halil

￥46,616

￥62,715 total

includes taxes & fees

Nov 8 - Nov 9

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A building entrance with a large arched doorway, the number 432 above it, and a brick-paved area in front.

A cafe with outdoor seating, a sign reading "INFUSED DRINKS NATURE'S KITCHEN," and a "BREAKFAST @ Cafe21" sign.

A modern bathroom with a sink, mirror, and a bed with a red pillow.

7. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Jessica

￥6,758

￥20,089 total

includes taxes & fees

Oct 27 - Oct 28

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A dining area with round tables set for a formal event, large windows offering a view of the city, and elegant floral arrangements.

A harbor with boats, a large building, and a parking area.

A cruise ship docked at a port with a large shipyard and military vessel in the background.

8. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Edgar

￥29,392

￥34,147 total

includes taxes & fees

Nov 8 - Nov 9

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

A hotel lobby with a blue patterned carpet, a green leather sofa, a red leather sofa, and a wooden railing with plants.

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

An outdoor dining area with tables and orange umbrellas, surrounded by buildings including the WM. PENN HOTEL.

9. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥15,047

￥17,116 total

includes taxes & fees

Nov 2 - Nov 3

A narrow hotel room with a kitchenette, a dining area, and a bed.

A modern living room with a black leather sofa, a black armchair, a wooden coffee table with a plant, and a bench.

A modern kitchen with white cabinets, a black refrigerator, and a microwave.

A modern living room with a dining area, a coffee machine, and a TV on the wall.

10. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

￥16,497

￥39,378 total

includes taxes & fees

Oct 20 - Oct 21

A restaurant with outdoor seating, brick walls, and decorative lighting.

A spacious lobby with a bar area, seating arrangements, and a large chandelier.

A spacious lobby with a high ceiling, large windows, and a central chandelier.

A spacious lobby with high ceilings, large windows, and elegant furniture.

11. The Horton Grand, Downtown/Gaslamp Quarter

2.8 km from San Diego Natural History Museum

Kelane

￥21,404

￥29,214 total

includes taxes & fees

Nov 16 - Nov 17

A rooftop terrace with outdoor seating, a view of the city, and a large window overlooking the harbor.

A hotel room with a large window offering a view of a marina with boats and a cityscape.

A hotel room with a large window offering a city view, a beige sofa with a red pillow, a floor lamp, and a small white table.

A modern hotel with a prominent yellow and blue facade, large windows, and a well-lit entrance area with palm trees.

12. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Chen

￥34,377

￥39,855 total

includes taxes & fees

Nov 10 - Nov 11

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern hotel room with a bed, a sofa, a dining area, and a kitchen.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

A modern interior with a long wooden table, blue bar stools, a sofa, and large windows offering a view of the street.

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Nathan

￥27,081

￥36,898 total

includes taxes & fees

Oct 25 - Oct 26

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

An outdoor patio area with tables and chairs, a fire pit, and string lights.

A modern hotel with a prominent circular tower and a glass facade.

A marina with numerous boats docked, a large ship in the background, and a modern building with balconies.

14. Marriott Marquis San Diego Marina

3.1 km from San Diego Natural History Museum

LaTonya

￥45,036

￥59,684 total

includes taxes & fees

Oct 29 - Oct 30

A modern hotel lobby with a blue patterned carpet, multiple seating areas, and large windows offering a view of the cityscape.

A modern hotel room with a large bed, a flat-screen TV, a desk, a sofa, and a view of the sea.

A modern room with a stationary bike, a flat-screen TV, and a kitchen area with white cabinets.

A modern dining area with a large table, six chairs, and a city view through large windows.

15. Manchester Grand Hyatt San Diego

3.1 km from San Diego Natural History Museum

Sarah

￥36,029

￥50,385 total

includes taxes & fees

Oct 30 - Oct 31

A cityscape at dusk with high-rise buildings and a bridge in the distance.

A modern hotel lobby with a wooden reception desk, a patterned wall, and a long corridor leading to a bright area with a view.

A modern bar area with a curved counter, bar stools, and a seating area with tables and chairs.

A high-rise hotel with multiple floors, a prominent entrance, and a view of the surrounding cityscape and waterfront.

16. Courtyard by Marriott San Diego Downtown Little Italy

Little Italy, 2 km from San Diego Natural History Museum

Cheryl

￥26,057

￥30,211 total

includes taxes & fees

Oct 25 - Oct 26

A swimming pool with a tiled edge, a blue lounge chair, and decorative wooden panels.

A hotel room with a bed, a sofa, a dining table with chairs, a lamp, and a framed picture on the wall.

A hotel with multiple floors, a prominent sign, and a modern building in the background.

A hotel room with a large bed, a sofa, two chairs, a small table, and a framed picture on the wall.

17. Best Western Plus Bayside Inn

2.3 km from San Diego Natural History Museum

Mariusz

￥23,973

￥27,749 total

includes taxes & fees

Oct 25 - Oct 26

A modern restaurant with multiple dining areas, large windows offering ocean views, and contemporary lighting fixtures.

A hotel room with a large window, a desk, a chair, a bed, and a TV.

A large building with a central dome and arched windows, surrounded by a reflective pond and colorful flowers.

An outdoor dining area with tables and chairs, a bar with a patterned ceiling, and a cityscape view in the background.

18. InterContinental San Diego by IHG

2.9 km from San Diego Natural History Museum

ALINE SOUZA

￥44,878

￥62,664 total

includes taxes & fees

Oct 25 - Oct 26

A large, historic hotel with multiple floors, a central courtyard, and a prominent entrance.

A lobby with a blue sofa, a white armchair, and a glass coffee table. There are large columns and a staircase in the background.

A modern interior with a dining area, a wicker chair, and a staircase.

A grand hall with a checkered floor, ornate columns, and a large chandelier.

19. The US Grant, a Luxury Collection Hotel, San Diego

2.2 km from San Diego Natural History Museum

Justin

￥37,498

￥43,538 total

includes taxes & fees

Nov 8 - Nov 9

A spacious indoor area with multiple dining tables and chairs, a central decorative fountain, and a second-floor balcony with a railing.

A conference room with a long table, chairs, a flat-screen TV, and framed artwork on the walls.

A hotel room with a sofa, armchair, small table, and a painting on the wall.

A wide sandy beach with waves, a few people, and a distant cityscape.

20. Embassy Suites by Hilton San Diego Bay Downtown

3.1 km from San Diego Natural History Museum

Maureen

￥32,505

￥43,420 total

includes taxes & fees

Oct 25 - Oct 26

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 976 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 546 reviews	View
Marriott Vacation Club®, San Diego	9.4 Exceptional 1,251 reviews	View
Westgate Hotel	9.4 Exceptional 1,054 reviews	View
Lafayette Hotel & Club	9.4 Exceptional 2,093 reviews	View

Top San Diego Natural History Museum Hotel Reviews

Little Italy Inn - Limited Service Apart Hotel

10/10 Excellent

"I enjoyed a few nights/days here with my partner. The location was great for exploring local farmer’s markets, restaurants etc and a short drive to nearby areas. The apartment was clean, the beds comfortable and we especially enjoyed the shared kitchen, gym and laundry facilities. The staff were very helpful and friendly and looked after our bags after check out."

Lafayette Hotel & Club

10/10 Excellent

"A wonderful stay all around!"

Wyndham San Diego Bayside

8/10 Good

"No complains"

The DEXTRO Little Italy, BW Premier Collection

10/10 Excellent

"Clean room, the staff was very nice and helped me in so many ways."

Best Western Seven Seas

8/10 Good

"I was in San Diego for a funeral. The room smelled of bleach so I figured it was clean. The room could have used a good dusting and a wipe down of the bathroom walls and doors. The hot tub was amazing. All in all it was very sufficient for my purposes as well as the cost the cost"

Omni San Diego Hotel at the Ballpark

8/10 Good

"Very nice property with excellent onsite restaurants. Only reason giving a 4 instead of 5 was due to the street noise at night."

The Sofia Hotel

10/10 Excellent

"Very cute place! Perfect location"

Hampton Inn San Diego-Downtown

10/10 Excellent

"It was a good value for the price."

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

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A blue sign with yellow text reading "SPANISH ART CENTER" above a tiled wall.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its fascinating museums.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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A museum interior with classical paintings, a central bench, and a pink wall.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 102 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and Best Western Seven Seas.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 102 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Air and Space Museum, Maritime Museum of San Diego, and USS Midway Museum feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at Old Globe Theater, San Diego Civic Theatre, and The Rady Shell at Jacobs Park.

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Find hotels near San Diego Natural History Museum, San Diego from ￥10,831

Change your mind

Treat yourself

Be picky

Check prices for these dates

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Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. Kasa Little Italy San Diego

3. Marriott Vacation Club®, San Diego

4. Westgate Hotel

5. Lafayette Hotel & Club

6. Pendry San Diego

7. Keating Hotel By At Mine Hospitality

8. Springhill Suites San Diego Downtown/Bayfront

9. Gaslamp Hostel

10. The Artifact Inn

11. The Horton Grand, Downtown/Gaslamp Quarter

12. Residence Inn by Marriott San Diego Downtown/Bayfront

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

14. Marriott Marquis San Diego Marina

15. Manchester Grand Hyatt San Diego

16. Courtyard by Marriott San Diego Downtown Little Italy

17. Best Western Plus Bayside Inn

18. InterContinental San Diego by IHG

19. The US Grant, a Luxury Collection Hotel, San Diego

20. Embassy Suites by Hilton San Diego Bay Downtown

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

Little Italy Inn - Limited Service Apart Hotel

Lafayette Hotel & Club

Wyndham San Diego Bayside

The DEXTRO Little Italy, BW Premier Collection

Best Western Seven Seas

Omni San Diego Hotel at the Ballpark

The Sofia Hotel

Hampton Inn San Diego-Downtown

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

Explore a world of travel with Expedia