The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern office space with a reception desk, seating area, and plants.

A modern conference room with a wooden floor, white chairs, and a long table.

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Andrew

￥8,523

￥9,695 total

includes taxes & fees

Oct 6 - Oct 7

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

A modern reception desk with a glass top, a large window offering a view, and a potted plant.

A modern interior with concrete walls, wooden beams, and a central planter with plants.

An outdoor seating area with sofas and chairs, a wooden staircase, and potted plants.

2. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

Mike

￥18,295

￥25,995 total

includes taxes & fees

Oct 26 - Oct 27

A rooftop pool with lounge chairs and a city skyline in the background.

A modern lobby with seating areas, large windows, and indoor plants.

A modern building with a sign reading "kasa little Italy" and a glass entrance.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

3. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Jeremy

￥32,718

￥51,129 total

includes taxes & fees

Oct 25 - Oct 26

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A modern bathroom with a sink, mirror, and a bed with a red pillow.

A building entrance with a large arched doorway, the number 432 above it, and a brick-paved area in front.

A modern living room with a brick wall, a flat-screen TV, a round red rug, and a seating area with a sofa and chairs.

4. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Jessica

￥9,668

￥23,387 total

includes taxes & fees

Oct 27 - Oct 28

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A large swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a building with a striped facade.

A luxurious interior with a large chandelier, patterned sofas, and a view of a cityscape through a large window.

A dimly lit room with patterned walls, a wooden table, and a chair.

5. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

katie

￥42,304

￥48,627 total

includes taxes & fees

Oct 6 - Oct 7

A high-rise hotel with multiple floors, a prominent sign at the top, and a well-lit facade.

A spacious bar/lounge area with leather seating, a bar counter, and hanging pendant lights.

A lobby with a purple-lit ceiling, a large wall mural, and seating areas.

A modern lobby with seating areas, a reception desk, and a sign indicating elevators to parking and a street.

6. Marriott Vacation Club®, San Diego

1.8 km from San Diego Natural History Museum

Veronica Dangerfield

￥29,360

￥34,042 total

includes taxes & fees

Oct 25 - Oct 26

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A fountain with multiple water jets in a courtyard with seating and potted plants.

A luxurious lobby with a grand chandelier, plush blue sofas, and ornate decor.

A rooftop terrace with white sofas, a fountain, and potted plants.

7. Westgate Hotel

2.3 km from San Diego Natural History Museum

Arlet

￥24,297

￥33,662 total

includes taxes & fees

Oct 25 - Oct 26

A modern bar area with a curved counter, multiple bar stools, and a large window offering a view of the cityscape.

An outdoor patio area with seating arrangements, including sofas, chairs, and round tables.

A spacious lobby with a high ceiling, a large sectional sofa, multiple seating areas, and a modern chandelier.

A rooftop lounge area with outdoor seating, a pool, and umbrellas.

8. Omni San Diego Hotel at the Ballpark

Gaslamp Quarter, 3 km from San Diego Natural History Museum

Shari

￥44,970

￥59,278 total

includes taxes & fees

Oct 24 - Oct 25

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

A multi-story hotel with a prominent 'PENDR' sign, large windows, and a corner entrance.

A bar area with a high ceiling, patterned wall, and seating.

A rooftop pool area with lounge chairs and a view of the building's brick facade.

9. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Halil

￥46,566

￥62,646 total

includes taxes & fees

Oct 27 - Oct 28

A restaurant with outdoor seating, brick walls, and decorative lighting.

A vintage car parked in front of a building with a sign that reads "Horton Grand Hotel."

A spacious lobby with high ceilings, large windows, and elegant furniture.

A spacious lobby with a bar area, seating arrangements, and a large chandelier.

10. The Horton Grand, Downtown/Gaslamp Quarter

2.8 km from San Diego Natural History Museum

Ross

￥24,269

￥32,532 total

includes taxes & fees

Oct 25 - Oct 26

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A harbor with boats, a large building, and a parking area.

A modern hotel with a prominent yellow and blue facade, large windows, and a well-lit entrance area with palm trees.

A cruise ship docked at a port with a large shipyard and military vessel in the background.

11. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Bonnie

￥26,677

￥31,005 total

includes taxes & fees

Oct 25 - Oct 26

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

A hotel lobby with a blue patterned carpet, a green leather sofa, a red leather sofa, and a wooden railing with plants.

An outdoor dining area with tables and orange umbrellas, surrounded by buildings including the WM. PENN HOTEL.

A kitchen area with stainless steel appliances, a coffee machine, and a variety of kitchen utensils. There is a sign above the counter that reads "gaslamp hostel SAN DIEGO".

12. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥15,831

￥18,008 total

includes taxes & fees

Nov 5 - Nov 6

A hotel room with two beds, a large mirror, a wooden headboard, and a carpeted floor.

A narrow alleyway with yellow buildings, a palm tree, and windows.

A modern interior with a seating area, a bookshelf, and a view through large windows.

A modern living room with a wooden dining table, blue sofa, patterned chairs, and a large window with a view of the street.

13. Hotel Z

Gaslamp Quarter, 2.6 km from San Diego Natural History Museum

Tiffany

￥20,705

￥29,493 total

includes taxes & fees

Oct 8 - Oct 9

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern kitchen with a built-in washer, a coffee maker, and a large window with a view of buildings.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

A modern hotel room with a bed, a sofa, a dining area, and a kitchen.

14. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Heather

￥27,052

￥36,857 total

includes taxes & fees

Oct 25 - Oct 26

A hotel entrance with a stone archway, multiple windows, and potted plants.

A cozy lounge area with wooden furniture, a fireplace, and lush tropical plants.

A modern bedroom with a large bed, a decorative headboard, a nightstand, and a view of the city through large windows.

A variety of potted plants, including cacti and other greenery, arranged in front of a building with large windows.

15. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Tamara

￥31,412

￥36,421 total

includes taxes & fees

Oct 14 - Oct 15

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

A marina with numerous boats docked, a large ship in the background, and a modern building with balconies.

A bar area with a long counter, multiple stools, and hanging wicker lamps.

A modern hotel with a prominent circular tower and a glass facade.

16. Marriott Marquis San Diego Marina

3.1 km from San Diego Natural History Museum

Thomas Roy

￥44,987

￥59,619 total

includes taxes & fees

Oct 25 - Oct 26

A narrow hotel room with a kitchenette, a dining area, and a bed.

A modern kitchen with a dining area, wooden floors, and a large mirror.

A modern kitchen with white cabinets, a black refrigerator, and a microwave.

A modern living room with a black leather sofa, a black armchair, a wooden coffee table with a plant, and a bench.

17. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

￥15,311

￥37,890 total

includes taxes & fees

Oct 7 - Oct 8

A rooftop terrace with outdoor seating, a view of the city, and a large window overlooking the harbor.

A dining area with round tables, chairs, and floral centerpieces.

A hotel room with a large window offering a view of a marina with boats and a cityscape.

A hotel room with a large window offering a city view, a beige sofa with a red pillow, a floor lamp, and a small white table.

18. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Vasiliy

￥43,338

￥50,227 total

includes taxes & fees

Oct 25 - Oct 26

An outdoor dining area with a long table and chairs, a street view, and a building with a 'P' parking sign.

A reception area with a brick wall, palm tree artwork, and surfboards on display.

A cozy restaurant with brick walls, wooden tables, and chairs. There are candles on the tables, and a chandelier hangs from the ceiling.

A bar area with a long counter, multiple stools, and a variety of bottles and glasses on shelves.

19. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Troy

￥27,644

￥32,052 total

includes taxes & fees

Oct 25 - Oct 26

A rooftop pool with lounge chairs and umbrellas, a clear sky, and a high-rise building in the background.

A modern hotel room with a large bed, bedside tables, a desk, and a view of a cityscape through large windows.

A spacious hotel lobby with a long reception desk, wooden paneling, and a large window with a view.

20. Manchester Grand Hyatt San Diego

3.1 km from San Diego Natural History Museum

Jose

￥36,148

￥50,513 total

includes taxes & fees

Oct 25 - Oct 26

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 967 reviews	View
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 219 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 540 reviews	View
Keating Hotel By At Mine Hospitality	9.4 Exceptional 193 reviews	View
Lafayette Hotel & Club	9.4 Exceptional 2,055 reviews	View

Top San Diego Natural History Museum Hotel Reviews

Hard Rock Hotel San Diego

10/10 Excellent

"The staff was very friendly and helpful. Anything we asked for, someone was right there to take care if it. Everything was very clean and well kept up."

Handlery Hotel

8/10 Good

"N/a"

The DEXTRO Little Italy, BW Premier Collection

8/10 Good

"Friendly reception desk and fresh water dispenser appreciated. One of the elevators was not working so it made checking out with luggage slow. The dining and bar area looked uninviting. Location in Little Italy was good for walking to other restaurants."

Hampton Inn San Diego-Downtown

10/10 Excellent

"Found a hair in bed. Most likely when housecleaning changed bedding. It was up by pillows. A/C could be better but it was extremely hot outside when I was there. Would only go to 66 degrees. They do not have airport shuttle as advertised on hotels.com. Great location"

The Sofia Hotel

10/10 Excellent

"We did have a light failure in the middle of night. Maintenance was called and they resolved the problem. The front desk also adjusted the bill to compensate for our difficulties."

Marriott Vacation Club®, San Diego

8/10 Good

"🙏"

Uptown Inn by Vantaggio - Limited Service Apart-Hotel

10/10 Excellent

"We had a great stay! The room had a charming Parisian feel—compact and studio-style, but completely modern and spotlessly clean."

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

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A blue sign with yellow text reading "SPANISH ART CENTER" above a tiled wall.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its fascinating museums.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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A museum interior with classical paintings, a central bench, and a pink wall.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 102 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and Best Western Seven Seas.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 102 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Air and Space Museum, Maritime Museum of San Diego, and USS Midway Museum feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at Old Globe Theater, San Diego Civic Theatre, and The Rady Shell at Jacobs Park.

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Find hotels near San Diego Natural History Museum, San Diego from ￥9,695

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. City24 Hotel Little Italy Mission Hills

3. Kasa Little Italy San Diego

4. Keating Hotel By At Mine Hospitality

5. Lafayette Hotel & Club

6. Marriott Vacation Club®, San Diego

7. Westgate Hotel

8. Omni San Diego Hotel at the Ballpark

9. Pendry San Diego

10. The Horton Grand, Downtown/Gaslamp Quarter

11. Springhill Suites San Diego Downtown/Bayfront

12. Gaslamp Hostel

13. Hotel Z

14. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

15. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

16. Marriott Marquis San Diego Marina

17. The Artifact Inn

18. Residence Inn by Marriott San Diego Downtown/Bayfront

19. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

20. Manchester Grand Hyatt San Diego

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

Hard Rock Hotel San Diego

Handlery Hotel

The DEXTRO Little Italy, BW Premier Collection

Hampton Inn San Diego-Downtown

The Sofia Hotel

Marriott Vacation Club®, San Diego

Uptown Inn by Vantaggio - Limited Service Apart-Hotel

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

Explore a world of travel with Expedia