The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern office space with a reception desk, seating area, and plants.

A modern lounge area with a blue sofa, yellow armchair, and a coffee table with a book and a potted plant.

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Wai Kit

￥9,476

￥10,779 total

includes taxes & fees

Sep 8 - Sep 9

A rooftop pool with lounge chairs and a city skyline in the background.

A modern building with a sign reading "kasa little Italy" and a glass entrance.

A high-rise building with a view of a harbor and sailboats.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

2. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Victor

￥34,333

￥53,067 total

includes taxes & fees

Sep 20 - Sep 21

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

A modern interior with concrete walls, wooden beams, and a central planter with plants.

An outdoor seating area with sofas and chairs, a wooden staircase, and potted plants.

3. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

omokayode

￥21,222

￥29,332 total

includes taxes & fees

Aug 24 - Aug 25

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A building entrance with a large arched doorway, the number 432 above it, and a brick-paved area in front.

A modern bathroom with a sink, mirror, and a bed with a red pillow.

A cafe with outdoor seating, a sign reading "INFUSED DRINKS NATURE'S KITCHEN," and a "BREAKFAST @ Cafe21" sign.

4. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Alberto

￥6,917

￥20,345 total

includes taxes & fees

Aug 31 - Sep 1

A high-rise hotel with multiple floors, a prominent sign at the top, and a well-lit facade.

A lobby with a purple-lit ceiling, a large wall mural, and seating areas.

A modern lobby with seating areas, a reception desk, and a sign indicating elevators to parking and a street.

A spacious lobby with a high ceiling, leather seating, multiple tables, and a large flat-screen TV mounted on the wall.

5. Marriott Vacation Club®, San Diego

1.8 km from San Diego Natural History Museum

Mabel

￥24,160

￥28,011 total

includes taxes & fees

Sep 7 - Sep 8

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A rooftop terrace with white sofas, a fountain, and potted plants.

A luxurious lobby with a grand chandelier, plush blue sofas, and ornate decor.

A luxurious room with ornate chandeliers, a grand staircase, and plush seating.

6. Westgate Hotel

2.3 km from San Diego Natural History Museum

Susan

￥27,044

￥36,884 total

includes taxes & fees

Aug 31 - Sep 1

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A checkered floor with round tables and chairs, a patterned ceiling, and large windows.

A luxurious interior with a large chandelier, patterned sofas, and a view of a cityscape through a large window.

A dimly lit room with patterned walls, a wooden table, and a chair.

7. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Jorgen

￥39,579

￥45,494 total

includes taxes & fees

Sep 7 - Sep 8

A restaurant with outdoor seating, brick walls, and decorative lighting.

A vintage car parked in front of a building with a sign that reads "Horton Grand Hotel."

A spacious lobby with high ceilings, large windows, and elegant furniture.

A spacious lobby with a bar area, seating arrangements, and a large chandelier.

8. The Horton Grand, Downtown/Gaslamp Quarter

Marina District, 2.8 km from San Diego Natural History Museum

Nathaniel

￥22,650

￥30,685 total

includes taxes & fees

Aug 24 - Aug 25

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

An outdoor patio area with tables and chairs, a fire pit, and string lights.

A bar area with a long counter, multiple stools, and hanging wicker lamps.

A marina with numerous boats docked, a large ship in the background, and a modern building with balconies.

9. Marriott Marquis San Diego Marina

Marina District, 3.1 km from San Diego Natural History Museum

CHLOE

￥34,333

￥47,340 total

includes taxes & fees

Sep 7 - Sep 8

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A dining area with round tables set for a formal event, large windows offering a view of the city, and elegant floral arrangements.

A harbor with boats, a large building, and a parking area.

A cruise ship docked at a port with a large shipyard and military vessel in the background.

10. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Shelley

￥31,313

￥36,372 total

includes taxes & fees

Sep 8 - Sep 9

A modern bar area with a curved counter, multiple bar stools, and a large window offering a view of the cityscape.

A spacious lobby with a high ceiling, a large sectional sofa, multiple seating areas, and a modern chandelier.

A spacious lobby with large windows, curved ceiling, and comfortable seating areas.

An outdoor patio area with seating arrangements, including sofas, chairs, and round tables.

11. Omni San Diego Hotel at the Ballpark

Gaslamp Quarter, 3 km from San Diego Natural History Museum

Andrew

￥20,218

￥30,630 total

includes taxes & fees

Sep 7 - Sep 8

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

A modern interior with a long wooden table, blue bar stools, a sofa, and large windows offering a view of the street.

A modern hotel room with a bed, a sofa, a dining area, and a kitchen.

12. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Heather

￥23,331

￥32,580 total

includes taxes & fees

Aug 31 - Sep 1

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

An outdoor dining area with tables and orange umbrellas, surrounded by buildings including the WM. PENN HOTEL.

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

A kitchen area with stainless steel appliances, a coffee machine, and a variety of kitchen utensils. There is a sign above the counter that reads "gaslamp hostel SAN DIEGO".

13. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥17,413

￥19,807 total

includes taxes & fees

Aug 27 - Aug 28

A rooftop terrace with outdoor seating, a view of the city, and a large window overlooking the harbor.

A hotel room with a large window offering a view of a marina with boats and a cityscape.

A dining area with round tables, chairs, and floral centerpieces.

A hotel room with a large window offering a city view, a beige sofa with a red pillow, a floor lamp, and a small white table.

14. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Traci

￥37,600

￥43,586 total

includes taxes & fees

Sep 7 - Sep 8

An outdoor dining area with tables and chairs, a fire feature, and a view of the water and city skyline.

A rooftop terrace with white chairs, a round table, and a sofa with striped cushions.

A modern hotel with multiple floors, a central courtyard, and surrounding high-rise buildings.

A spacious living room with a large window, a round coffee table, and modern seating.

15. InterContinental San Diego by IHG

2.9 km from San Diego Natural History Museum

Juan Ramon

￥39,738

￥56,768 total

includes taxes & fees

Sep 7 - Sep 8

A hotel entrance with a stone archway, multiple windows, and potted plants.

A cozy lounge area with wooden furniture, a fireplace, and lush tropical plants.

A spacious living room with a high ceiling, multiple seating areas, and abundant indoor plants.

A variety of potted plants, including cacti and other greenery, arranged in front of a building with large windows.

16. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Pamela Ann Callum

￥26,863

￥31,146 total

includes taxes & fees

Sep 7 - Sep 8

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

A bar area with a high ceiling, patterned wall, and seating.

An outdoor dining area with wicker furniture and potted plants.

A multi-story hotel with a prominent 'PENDR' sign, large windows, and a corner entrance.

17. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Ann

￥46,890

￥63,082 total

includes taxes & fees

Sep 13 - Sep 14

An outdoor dining area with tables and chairs, a menu stand, and a view of a street with palm trees and a building in the background.

A modern lobby with a digital display wall, reception desks, and a spacious, well-lit area.

A modern bar area with a circular bar, multiple stools, and a large screen.

18. Hard Rock Hotel San Diego

Gaslamp Quarter, 2.9 km from San Diego Natural History Museum

Lisa

￥28,147

￥40,307 total

includes taxes & fees

Aug 26 - Aug 27

A narrow hotel room with a kitchenette, a dining area, and a bed.

A modern kitchen with white cabinets, a microwave, and a refrigerator. There is a dining area with a wooden table set for four, including plates, glasses, and cutlery.

A modern living room with a wooden floor, a dining area, a sofa, a TV, and a large window with curtains.

A modern kitchen with a dining area, wooden floors, and a large mirror.

19. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

￥13,511

￥35,794 total

includes taxes & fees

Aug 24 - Aug 25

A modern hotel room with a large bed, a sofa, a TV, and a city view.

A rooftop pool with lounge chairs and umbrellas, a clear sky, and a high-rise building in the background.

A high-rise hotel with multiple floors, a prominent curved glass facade, and a view of a bridge and water body in the background.

A spacious hotel dining area with multiple tables and chairs, large windows, and a view of the outdoors.

20. Manchester Grand Hyatt San Diego

Marina District, 3.1 km from San Diego Natural History Museum

Miguel

￥29,565

￥42,940 total

includes taxes & fees

Sep 7 - Sep 8

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 930 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 501 reviews	View
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 191 reviews	View
Keating Hotel By At Mine Hospitality	9.4 Exceptional 144 reviews	View
Marriott Vacation Club®, San Diego	9.4 Exceptional 1,166 reviews	View

Top San Diego Natural History Museum Hotel Reviews

The Neon Elm Hotel

10/10 Excellent

"Literally close to everything which is convenient! Room was small, but CLEAN and modern and it was everything I needed for such a short stay!"

Wyndham San Diego Bayside

10/10 Excellent

"Nice place great location"

Courtyard by Marriott San Diego Downtown Little Italy

8/10 Good

"Rooms were updated and clean. Check in and check out was easy. Read several reviews about the terrible parking garage so we opted to park across the street and saved $50 vs paying for the garage. Only tiny issue was they said our room would be cleaned on the 2nd night and we came back and it was not cleaned. Not a huge issue, just had to go down and get clean towels. Location is great! Quiet and right next to the Little Italy Saturday market. We would definitely stay again!"

Holiday Inn Express San Diego Downtown by IHG

10/10 Excellent

"Amazing! Would highly recommend"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

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A colorful courtyard with a tiled floor, a bench, and a fountain.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its acclaimed art scene.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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An art gallery with pink walls and ceiling, featuring classical paintings and a central table.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 103 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

Manchester Grand Hyatt San Diego is one of the top choices for your stay based on our traveler data, and this hotel offers 6 restaurants and 3 bars. It's located 1.9 mi (3.1 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and The DEXTRO Little Italy, BW Premier Collection.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 103 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Museum of Art, San Diego Air and Space Museum, and Maritime Museum of San Diego feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Whaley House Museum, and Mission Basilica San Diego de Alcala. You can check out the local talent at San Diego Civic Theatre, The Rady Shell at Jacobs Park, and Humphreys Concerts by the Bay.

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Find hotels near San Diego Natural History Museum, San Diego from ￥10,779

Change your mind

Treat yourself

Be picky

Check prices for these dates

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Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. Kasa Little Italy San Diego

3. City24 Hotel Little Italy Mission Hills

4. Keating Hotel By At Mine Hospitality

5. Marriott Vacation Club®, San Diego

6. Westgate Hotel

7. Lafayette Hotel & Club

8. The Horton Grand, Downtown/Gaslamp Quarter

9. Marriott Marquis San Diego Marina

10. Springhill Suites San Diego Downtown/Bayfront

11. Omni San Diego Hotel at the Ballpark

12. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

13. Gaslamp Hostel

14. Residence Inn by Marriott San Diego Downtown/Bayfront

15. InterContinental San Diego by IHG

16. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

17. Pendry San Diego

18. Hard Rock Hotel San Diego

19. The Artifact Inn

20. Manchester Grand Hyatt San Diego

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

The Neon Elm Hotel

Wyndham San Diego Bayside

Courtyard by Marriott San Diego Downtown Little Italy

Holiday Inn Express San Diego Downtown by IHG

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

Explore a world of travel with Expedia