The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Wai Kit

￥10,300

￥11,716 total

includes taxes & fees

Sep 6 - Sep 7

Deluxe 2 King Bedrooms, Multiple Beds, Sleeps 11ppl | Terrace/patio

2. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

omokayode

￥21,406

￥29,539 total

includes taxes & fees

Aug 31 - Sep 1

Deluxe Apartment, 1 Queen Bed with Sofa bed, Bay View (Self Check-in with Virtual Front Desk) | Living area

3. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Victor

￥34,516

￥53,287 total

includes taxes & fees

Sep 1 - Sep 2

Superior Room, 1 King Bed, Private Bathroom, City View (Self check-in)

Superior Room, 1 King Bed, Private Bathroom, City View (Self check-in) | Living area

4. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Alberto

￥4,760

￥17,901 total

includes taxes & fees

Sep 2 - Sep 3

5. Marriott Vacation Club®, San Diego

1.8 km from San Diego Natural History Museum

Mabel

￥24,182

￥28,038 total

includes taxes & fees

Sep 8 - Sep 9

6. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Jorgen

￥38,821

￥44,623 total

includes taxes & fees

Sep 7 - Sep 8

7. Westgate Hotel

2.3 km from San Diego Natural History Museum

Chris

￥26,768

￥36,570 total

includes taxes & fees

Sep 8 - Sep 9

8. Omni San Diego Hotel at the Ballpark

Gaslamp Quarter, 3 km from San Diego Natural History Museum

Andrew

￥19,872

￥30,234 total

includes taxes & fees

Sep 7 - Sep 8

9. The Horton Grand, Downtown/Gaslamp Quarter

Marina District, 2.8 km from San Diego Natural History Museum

Nathaniel

￥22,650

￥30,685 total

includes taxes & fees

Aug 30 - Aug 31

Studio Suite, 1 King Bed with Sofa bed, Bay View (Corner)

10. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Shelley

￥31,341

￥36,404 total

includes taxes & fees

Sep 13 - Sep 14

11. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Pamela Ann Callum

￥26,886

￥31,172 total

includes taxes & fees

Sep 7 - Sep 8

12. Hotel Z

Gaslamp Quarter, 2.6 km from San Diego Natural History Museum

Sarah

￥18,109

￥26,527 total

includes taxes & fees

Sep 1 - Sep 2

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Heather

￥23,351

￥32,609 total

includes taxes & fees

Aug 31 - Sep 1

14. Marriott Marquis San Diego Marina

Marina District, 3.1 km from San Diego Natural History Museum

CHLOE

￥34,363

￥47,381 total

includes taxes & fees

Sep 7 - Sep 8

15. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

￥12,727

￥34,841 total

includes taxes & fees

Aug 26 - Aug 27

Standard Quadruple Room, Mixed Dorm | Shared kitchen facilities

16. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥17,250

￥19,622 total

includes taxes & fees

Aug 27 - Aug 28

17. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Melinda

￥50,360

￥67,117 total

includes taxes & fees

Sep 1 - Sep 2

18. Hard Rock Hotel San Diego

Gaslamp Quarter, 2.9 km from San Diego Natural History Museum

Lisa

￥28,147

￥40,307 total

includes taxes & fees

Sep 2 - Sep 3

Studio, 1 King Bed with Sofa bed, City View

19. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Traci

￥41,204

￥47,758 total

includes taxes & fees

Aug 31 - Sep 1

20. Manchester Grand Hyatt San Diego

Marina District, 3.1 km from San Diego Natural History Museum

Miguel

￥30,863

￥44,452 total

includes taxes & fees

Sep 8 - Sep 9

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Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 931 reviews	View
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 192 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 505 reviews	View
Keating Hotel By At Mine Hospitality	9.4 Exceptional 145 reviews	View
Marriott Vacation Club®, San Diego	9.4 Exceptional 1,173 reviews	View

Top San Diego Natural History Museum Hotel Reviews

Wyndham San Diego Bayside

10/10 Excellent

"Wonderful stay on the bay! Very friendly staff, enjoyed the view from our balcony."

Omni San Diego Hotel at the Ballpark

10/10 Excellent

"Great stay all around!"

The Sofia Hotel

10/10 Excellent

"location is super, staff was friendly"

Marriott Vacation Club®, San Diego

10/10 Excellent

"The staff and room was very beautiful and nice. I honestly think that they should’ve warned us to buy the timeshare plan at the end shffeel. I want to check out without any hassle and that’s it. I broke it may be for only Marriott members, but it’s still a minor inconvenience. Otherwise, I would definitely stay again!"

The Neon Elm Hotel

10/10 Excellent

"Room was a great set up with there were more towels."

Manchester Grand Hyatt San Diego

10/10 Excellent

"Great time and excellent breakfast!"

Ash&9th

10/10 Excellent

"The view was amazing ! The only issue was that the doors needed weather strips since bugs came inside from underneath the front door. Other than that, staff was great and the elevator felt like a great touch."

Uptown Inn by Vantaggio - Limited Service Apart-Hotel

8/10 Good

"Room was perfect for our short trip. Clean room and friendly staff."

San Diego Downtown Lodge

10/10 Excellent

"Awesome and relaxing"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

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A colorful courtyard with a tiled floor, a bench, and a fountain.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its acclaimed art scene.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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An art gallery with pink walls and ceiling, featuring classical paintings and a central table.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 106 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

Manchester Grand Hyatt San Diego is one of the top choices for your stay based on our traveler data, and this hotel offers 6 restaurants and 3 bars. It's located 1.9 mi (3.1 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and The DEXTRO Little Italy, BW Premier Collection.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 106 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Museum of Art, San Diego Air and Space Museum, and Maritime Museum of San Diego feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Whaley House Museum, and Mission Basilica San Diego de Alcala. You can check out the local talent at San Diego Civic Theatre, The Rady Shell at Jacobs Park, and Humphreys Concerts by the Bay.

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Find hotels near San Diego Natural History Museum, San Diego from ￥11,716

Change your mind

Treat yourself

Be picky

Check prices for these dates

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Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. City24 Hotel Little Italy Mission Hills

3. Kasa Little Italy San Diego

4. Keating Hotel By At Mine Hospitality

5. Marriott Vacation Club®, San Diego

6. Lafayette Hotel & Club

7. Westgate Hotel

8. Omni San Diego Hotel at the Ballpark

9. The Horton Grand, Downtown/Gaslamp Quarter

10. Springhill Suites San Diego Downtown/Bayfront

11. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

12. Hotel Z

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

14. Marriott Marquis San Diego Marina

15. The Artifact Inn

16. Gaslamp Hostel

17. Pendry San Diego

18. Hard Rock Hotel San Diego

19. Residence Inn by Marriott San Diego Downtown/Bayfront

20. Manchester Grand Hyatt San Diego

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

Wyndham San Diego Bayside

Omni San Diego Hotel at the Ballpark

The Sofia Hotel

Marriott Vacation Club®, San Diego

The Neon Elm Hotel

Manchester Grand Hyatt San Diego

Ash&9th

Uptown Inn by Vantaggio - Limited Service Apart-Hotel

San Diego Downtown Lodge

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

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