The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern conference room with a wooden floor, white chairs, and a long table.

A modern lounge area with a blue sofa, yellow armchair, and a coffee table with a book and a potted plant.

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Wai Kit

￥7,503

￥8,535 total

includes taxes & fees

Oct 12 - Oct 13

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

A modern interior with concrete walls, wooden beams, and a central planter with plants.

A modern bedroom with a large bed, a nightstand, a wall-mounted lamp, and a window with curtains.

An outdoor seating area with sofas and chairs, a wooden staircase, and potted plants.

2. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

omokayode

￥16,570

￥23,931 total

includes taxes & fees

Sep 14 - Sep 15

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A building entrance with a large arched doorway, the number 432 above it, and a brick-paved area in front.

A cafe with outdoor seating, a sign reading "INFUSED DRINKS NATURE'S KITCHEN," and a "BREAKFAST @ Cafe21" sign.

A modern living room with a brick wall, a flat-screen TV, a round red rug, and a seating area with a sofa and chairs.

3. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Jessica

￥12,588

￥26,436 total

includes taxes & fees

Sep 23 - Sep 24

A rooftop pool with lounge chairs and a city skyline in the background.

A modern building with a sign reading "kasa little Italy" and a glass entrance.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

A high-rise building with a view of a harbor and sailboats.

4. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Victor

￥28,833

￥46,400 total

includes taxes & fees

Sep 20 - Sep 21

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A fountain with multiple water jets in a courtyard with seating and potted plants.

A luxurious lobby with a grand chandelier, plush blue sofas, and ornate decor.

A rooftop terrace with white sofas, a fountain, and potted plants.

5. Westgate Hotel

2.3 km from San Diego Natural History Museum

Chris

￥28,021

￥37,859 total

includes taxes & fees

Sep 27 - Sep 28

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

A rooftop pool area with lounge chairs and a view of the building's brick facade.

An outdoor dining area with wicker furniture and potted plants.

A multi-story hotel with a prominent 'PENDR' sign, large windows, and a corner entrance.

6. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Melinda

￥48,633

￥64,856 total

includes taxes & fees

Oct 5 - Oct 6

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A luxurious interior with a large chandelier, patterned sofas, and a view of a cityscape through a large window.

A checkered floor with round tables and chairs, a patterned ceiling, and large windows.

A dimly lit room with patterned walls, a wooden table, and a chair.

7. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Angela

￥38,443

￥44,187 total

includes taxes & fees

Sep 30 - Oct 1

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

An outdoor dining area with tables and orange umbrellas, surrounded by buildings including the WM. PENN HOTEL.

A kitchen area with stainless steel appliances, a coffee machine, and a variety of kitchen utensils. There is a sign above the counter that reads "gaslamp hostel SAN DIEGO".

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

8. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥15,312

￥17,418 total

includes taxes & fees

Oct 12 - Oct 13

A restaurant with outdoor seating, brick walls, and decorative lighting.

A spacious lobby with high ceilings, large windows, and elegant furniture.

A spacious lobby with a bar area, seating arrangements, and a large chandelier.

A spacious lobby with a high ceiling, large windows, and a central chandelier.

9. The Horton Grand, Downtown/Gaslamp Quarter

Marina District, 2.8 km from San Diego Natural History Museum

Ruben

￥22,710

￥30,598 total

includes taxes & fees

Sep 13 - Sep 14

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

A bar area with a long counter, multiple stools, and hanging wicker lamps.

An outdoor patio area with tables and chairs, a fire pit, and string lights.

A modern hotel with a prominent circular tower and a glass facade.

10. Marriott Marquis San Diego Marina

Marina District, 3.1 km from San Diego Natural History Museum

Daniel

￥45,545

￥60,100 total

includes taxes & fees

Sep 12 - Sep 13

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A cruise ship docked at a port with a large shipyard and military vessel in the background.

A harbor with boats, a large building, and a parking area.

A dining area with round tables set for a formal event, large windows offering a view of the city, and elegant floral arrangements.

11. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Bonnie

￥31,804

￥36,937 total

includes taxes & fees

Sep 28 - Sep 29

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

A modern interior with a long wooden table, blue bar stools, a sofa, and large windows offering a view of the street.

A modern kitchen with a built-in washer, a coffee maker, and a large window with a view of buildings.

12. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Heather

￥25,193

￥34,581 total

includes taxes & fees

Sep 28 - Sep 29

A hotel entrance with a stone archway, multiple windows, and potted plants.

A modern bedroom with a large bed, a decorative headboard, a nightstand, and a view of the city through large windows.

A cozy lounge area with wooden furniture, a fireplace, and lush tropical plants.

A variety of potted plants, including cacti and other greenery, arranged in front of a building with large windows.

13. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Michael

￥33,811

￥39,202 total

includes taxes & fees

Sep 20 - Sep 21

A rooftop terrace with outdoor seating, a view of the city, and a large window overlooking the harbor.

A hotel room with a large window offering a view of a marina with boats and a cityscape.

A modern hotel with a prominent yellow and blue facade, large windows, and a well-lit entrance area with palm trees.

A dining area with round tables, chairs, and floral centerpieces.

14. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Traci

￥42,388

￥49,126 total

includes taxes & fees

Sep 30 - Oct 1

A grand lobby with marble floors, a chandelier, and ornate doors.

A multi-story building with a prominent corner entrance, multiple windows, and a flag on top.

A rooftop terrace with outdoor seating, umbrellas, and a view of the city skyline.

A grand lobby with marble floors, ornate chandeliers, and a seating area with patterned upholstery.

15. Gaslamp Plaza Suites

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Kathryn

￥20,843

￥23,708 total

includes taxes & fees

Sep 13 - Sep 14

A hotel room with two beds, a desk, a chair, and a view of the cityscape.

A gym with treadmills and elliptical machines arranged in rows, large windows with a view of a cityscape and water.

A modern living room with a sofa and ottoman, a small table with a vase of flowers, a floor lamp, and a view of a cityscape through large windows.

A hotel room with a dining area, a kitchen, and a bathroom.

16. Manchester Grand Hyatt San Diego

Marina District, 3.1 km from San Diego Natural History Museum

Steven

￥35,355

￥49,405 total

includes taxes & fees

Sep 13 - Sep 14

A modern lounge area with a staircase, seating arrangements, and a bar area with a patterned wall and hanging lights.

A dimly lit bar area with a brick wall, a curved staircase, and a seating area with a sofa and chairs.

A multi-level bar area with a check-in/out sign, a staircase, and a variety of bottles displayed on shelves.

A modern lounge area with a sofa, a table, and a stack of wooden blocks.

17. Moxy San Diego Downtown/Gaslamp Quarter

Gaslamp Quarter, 2.3 km from San Diego Natural History Museum

Samantha

￥23,214

￥28,305 total

includes taxes & fees

Sep 13 - Sep 14

A cityscape at dusk with illuminated buildings and a bridge in the distance.

A high-rise hotel with multiple floors, a prominent entrance, and a view of the surrounding cityscape and waterfront.

A modern hotel lobby with a wooden reception desk, a patterned wall, and a long corridor leading to a bright area with a view.

A modern bar area with a curved counter, bar stools, and a seating area with tables and chairs.

18. Courtyard by Marriott San Diego Downtown Little Italy

Little Italy, 2 km from San Diego Natural History Museum

Victoria

￥26,262

￥30,449 total

includes taxes & fees

Sep 28 - Sep 29

A cozy outdoor seating area with a fireplace, cushioned seating, and potted plants.

A modern bathroom with a large mirror, two sinks, and a seating area with two chairs and a small table.

The entrance to the Young Men's Christian Association building with a grand arched doorway, columns, and a staircase leading up to the entrance.

A spacious outdoor seating area with multiple tables and chairs, surrounded by large windows and potted plants.

19. The Guild Hotel, San Diego Downtown, a Marriott Tribute Portfolio Hotel

2.6 km from San Diego Natural History Museum

ZHENG

￥27,636

￥32,042 total

includes taxes & fees

Sep 13 - Sep 14

A bar area with a marble column, white curtains, and a patterned bar counter.

A spacious lobby with a grand staircase, marble columns, and a seating area with sofas and armchairs.

A hotel entrance with a checkered floor, a sign reading "COURTYARD BY MARRIOTT," and two potted plants.

A spacious lobby with a large sectional sofa, a bar area, and a dining space.

20. Courtyard by Marriott San Diego Downtown

2.1 km from San Diego Natural History Museum

Burt

￥26,115

￥30,279 total

includes taxes & fees

Sep 27 - Sep 28

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 946 reviews	View
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 200 reviews	View
Keating Hotel By At Mine Hospitality	9.4 Exceptional 166 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 523 reviews	View
Westgate Hotel	9.4 Exceptional 1,033 reviews	View

Top San Diego Natural History Museum Hotel Reviews

Little Italy Inn - Limited Service Apart Hotel

8/10 Good

"Very kind and accommodating staff"

Lafayette Hotel & Club

10/10 Excellent

"Amazing hotel! Will for sure be staying here again!"

Omni San Diego Hotel at the Ballpark

10/10 Excellent

"Amazing place to stay and watch a Padres game!"

Wyndham San Diego Bayside

10/10 Excellent

"Great super location"

Marriott Vacation Club®, San Diego

10/10 Excellent

"I love so much that I don't want to leave"

Keating Hotel By At Mine Hospitality

10/10 Excellent

"Such a great location. Staff was super helpful and checked in on us everyday. Will definitely stay here again!"

The DEXTRO Little Italy, BW Premier Collection

8/10 Good

"Great stay and staff"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

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A colorful courtyard with a tiled floor, a bench, and a fountain.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its fascinating museums.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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An art gallery with pink walls and ceiling, featuring classical paintings and a central table.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 104 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Manchester Grand Hyatt San Diego and Wyndham San Diego Bayside.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 104 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Museum of Art, San Diego Air and Space Museum, and Maritime Museum of San Diego feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at San Diego Civic Theatre, The Rady Shell at Jacobs Park, and Humphreys Concerts by the Bay.

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Find hotels near San Diego Natural History Museum, San Diego from ￥8,535

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. City24 Hotel Little Italy Mission Hills

3. Keating Hotel By At Mine Hospitality

4. Kasa Little Italy San Diego

5. Westgate Hotel

6. Pendry San Diego

7. Lafayette Hotel & Club

8. Gaslamp Hostel

9. The Horton Grand, Downtown/Gaslamp Quarter

10. Marriott Marquis San Diego Marina

11. Springhill Suites San Diego Downtown/Bayfront

12. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

13. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

14. Residence Inn by Marriott San Diego Downtown/Bayfront

15. Gaslamp Plaza Suites

16. Manchester Grand Hyatt San Diego

17. Moxy San Diego Downtown/Gaslamp Quarter

18. Courtyard by Marriott San Diego Downtown Little Italy

19. The Guild Hotel, San Diego Downtown, a Marriott Tribute Portfolio Hotel

20. Courtyard by Marriott San Diego Downtown

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

Little Italy Inn - Limited Service Apart Hotel

Lafayette Hotel & Club

Omni San Diego Hotel at the Ballpark

Wyndham San Diego Bayside

Marriott Vacation Club®, San Diego

Keating Hotel By At Mine Hospitality

The DEXTRO Little Italy, BW Premier Collection

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

Explore a world of travel with Expedia