The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for San Diego Natural History Museum hotels

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

1. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

Donavin

￥26,069 total

includes taxes & fees

Dec 2 - Dec 3

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

2. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Dylan

￥10,748 total

includes taxes & fees

Nov 5 - Nov 6

A rooftop pool with lounge chairs and a city skyline in the background.

3. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Nirmeen

￥48,144 total

includes taxes & fees

Nov 12 - Nov 13

A spacious lounge area with a sofa, a coffee table, and a bar with stools.

4. Marriott Vacation Club®, San Diego

1.8 km from San Diego Natural History Museum

Dirosia

￥26,361 total

includes taxes & fees

Nov 23 - Nov 24

A bar area with a glass ceiling, a central bar counter, and multiple stools.

5. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Heather

￥49,546 total

includes taxes & fees

Nov 23 - Nov 24

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

6. Westgate Hotel

2.3 km from San Diego Natural History Museum

Clement

￥31,395 total

includes taxes & fees

Nov 8 - Nov 9

A modern bar area with a curved counter, multiple bar stools, and a large window offering a view of the cityscape.

7. Omni San Diego Hotel at the Ballpark

Gaslamp Quarter, 3 km from San Diego Natural History Museum

gregory

￥36,878 total

includes taxes & fees

Nov 23 - Nov 24

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

8. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Vasilios

￥62,663 total

includes taxes & fees

Nov 24 - Nov 25

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

9. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Audrey

￥19,087 total

includes taxes & fees

Nov 16 - Nov 17

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

10. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Edgar

￥31,012 total

includes taxes & fees

Nov 23 - Nov 24

A restaurant with outdoor seating, brick walls, and decorative lighting.

11. The Horton Grand, Downtown/Gaslamp Quarter

Marina District, 2.8 km from San Diego Natural History Museum

Kelane

￥26,500 total

includes taxes & fees

Dec 1 - Dec 2

A hotel entrance with a stone archway, multiple windows, and potted plants.

12. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Alisha

￥36,430 total

includes taxes & fees

Nov 24 - Nov 25

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Christopher

￥33,843 total

includes taxes & fees

Nov 17 - Nov 18

A narrow hotel room with a kitchenette, a dining area, and a bed.

14. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

￥33,895 total

includes taxes & fees

Nov 5 - Nov 6

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

15. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

stacy

￥17,474 total

includes taxes & fees

Nov 5 - Nov 6

An outdoor dining area with tables and chairs, a fire feature, and a view of the water and cityscape.

16. InterContinental San Diego by IHG

2.9 km from San Diego Natural History Museum

Nathan

￥61,882 total

includes taxes & fees

Nov 29 - Nov 30

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

17. Marriott Marquis San Diego Marina

Marina District, 3.1 km from San Diego Natural History Museum

Thomas Roy

￥47,756 total

includes taxes & fees

Dec 5 - Dec 6

An outdoor dining area with a long table and chairs, a street view, and a building with a 'P' parking sign.

18. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Alexis

￥26,297 total

includes taxes & fees

Nov 23 - Nov 24

A modern interior with a sectional sofa, a glass coffee table, and large windows offering a view of the cityscape.

19. Best Western Plus Bayside Inn

2.3 km from San Diego Natural History Museum

Kesia

￥26,227 total

includes taxes & fees

Nov 11 - Nov 12

A grand lobby with marble floors, a chandelier, and ornate doors.

20. Gaslamp Plaza Suites

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

George

￥23,797 total

includes taxes & fees

Dec 3 - Dec 4

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
City24 Hotel Little Italy Mission Hills	4.5 star property	9.6 Exceptional 239 reviews	View
Stay Classy Hostel	2.0 star property	9.6 Exceptional 987 reviews	View
Kasa Little Italy San Diego	4.5 star property	9.6 Exceptional 560 reviews	View
Marriott Vacation Club®, San Diego	3.5 star property	9.4 Exceptional 1,259 reviews	View
Lafayette Hotel & Club	4.0 star property	9.4 Exceptional 2,129 reviews	View

Top San Diego Natural History Museum Hotel Reviews

The Neon Elm Hotel

10/10 Excellent

"It was clean, easy check in"

Lafayette Hotel & Club

10/10 Excellent

"Over the top , fabulous decor . Not a detail missed . Lovely room with the most amazing bar I’ve ever seen in a hotel room . Beautiful small bathroom with great water pressure for showering ! Don’t miss the restaurant downstairs , great atmosphere , food , and service . Breakfast poolside was sunshine California perfect . This is easily San Diego’s most creative and hopping hotel . A don’t miss !"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

See properties

Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 102 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and Best Western Seven Seas.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 102 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Air and Space Museum, Maritime Museum of San Diego, and USS Midway Museum feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at Old Globe Theater, San Diego Civic Theatre, and The Rady Shell at Jacobs Park.

Explore a world of travel with Expedia

Flights from San Diego

San Diego County Vacations

San Diego Vacation Rentals

Find hotels near San Diego Natural History Museum, San Diego from ￥10,748

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. City24 Hotel Little Italy Mission Hills

2. Stay Classy Hostel

3. Kasa Little Italy San Diego

4. Marriott Vacation Club®, San Diego

5. Lafayette Hotel & Club

6. Westgate Hotel

7. Omni San Diego Hotel at the Ballpark

8. Pendry San Diego

9. Keating Hotel By At Mine Hospitality

10. Springhill Suites San Diego Downtown/Bayfront

11. The Horton Grand, Downtown/Gaslamp Quarter

12. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

14. The Artifact Inn

15. Gaslamp Hostel

16. InterContinental San Diego by IHG

17. Marriott Marquis San Diego Marina

18. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

19. Best Western Plus Bayside Inn

20. Gaslamp Plaza Suites

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

The Neon Elm Hotel

Other attractions near San Diego Natural History Museum

Fleet Science Center

Frequently asked questions

Explore a world of travel with Expedia