The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for San Diego Natural History Museum hotels

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern conference room with a wooden floor, white chairs, and a long table.

A modern office space with a reception desk, seating area, and plants.

A modern lounge area with a blue sofa, yellow armchair, and a coffee table with a book and a potted plant.

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Wai Kit

￥8,629

￥9,815 total

includes taxes & fees

Sep 2 - Sep 3

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

An outdoor seating area with sofas and chairs, a wooden staircase, and potted plants.

A modern reception desk with a glass top, a large window offering a view, and a potted plant.

2. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

omokayode

￥21,033

￥29,148 total

includes taxes & fees

Sep 28 - Sep 29

A rooftop pool with lounge chairs and a city skyline in the background.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

A high-rise building with a view of a harbor and sailboats.

A modern lobby with seating areas, large windows, and indoor plants.

3. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Victor

￥35,593

￥54,576 total

includes taxes & fees

Sep 2 - Sep 3

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A cafe with outdoor seating, a sign reading "INFUSED DRINKS NATURE'S KITCHEN," and a "BREAKFAST @ Cafe21" sign.

A modern living room with a brick wall, a flat-screen TV, a round red rug, and a seating area with a sofa and chairs.

A building entrance with a large arched doorway, the number 432 above it, and a brick-paved area in front.

4. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Khoi

￥7,497

￥21,069 total

includes taxes & fees

Sep 2 - Sep 3

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A checkered floor with round tables and chairs, a patterned ceiling, and large windows.

A large swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a building with a striped facade.

A luxurious interior with a large chandelier, patterned sofas, and a view of a cityscape through a large window.

5. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Edgar

￥29,841

￥34,301 total

includes taxes & fees

Sep 8 - Sep 9

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A rooftop terrace with white sofas, a fountain, and potted plants.

A fountain with multiple water jets in a courtyard with seating and potted plants.

A luxurious lobby with a grand chandelier, plush blue sofas, and ornate decor.

6. Westgate Hotel

2.3 km from San Diego Natural History Museum

Chris

￥26,885

￥36,728 total

includes taxes & fees

Sep 13 - Sep 14

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

A hotel lobby with a blue patterned carpet, a green leather sofa, a red leather sofa, and a wooden railing with plants.

A kitchen area with stainless steel appliances, a coffee machine, and a variety of kitchen utensils. There is a sign above the counter that reads "gaslamp hostel SAN DIEGO".

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

7. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥16,102

￥18,316 total

includes taxes & fees

Sep 15 - Sep 16

A restaurant with outdoor seating, brick walls, and decorative lighting.

A vintage car parked in front of a building with a sign that reads "Horton Grand Hotel."

A spacious lobby with a high ceiling, large windows, and a central chandelier.

A spacious lobby with high ceilings, large windows, and elegant furniture.

8. The Horton Grand, Downtown/Gaslamp Quarter

2.8 km from San Diego Natural History Museum

Nathaniel

￥22,171

￥30,154 total

includes taxes & fees

Sep 7 - Sep 8

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A dining area with round tables set for a formal event, large windows offering a view of the city, and elegant floral arrangements.

A modern hotel with a prominent yellow and blue facade, large windows, and a well-lit entrance area with palm trees.

A harbor with boats, a large building, and a parking area.

9. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Bonnie

￥34,355

￥39,894 total

includes taxes & fees

Sep 28 - Sep 29

A narrow hotel room with a kitchenette, a dining area, and a bed.

A modern kitchen with white cabinets, a microwave, and a refrigerator. There is a dining area with a wooden table set for four, including plates, glasses, and cutlery.

A modern living room with a wooden floor, a dining area, a sofa, a TV, and a large window with curtains.

A modern living room with a black leather sofa, a black armchair, a wooden coffee table with a plant, and a bench.

10. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

￥14,062

￥36,576 total

includes taxes & fees

Sep 2 - Sep 3

A hotel entrance with a stone archway, multiple windows, and potted plants.

A cozy lounge area with wooden furniture, a fireplace, and lush tropical plants.

A spacious living room with a high ceiling, multiple seating areas, and abundant indoor plants.

A variety of potted plants, including cacti and other greenery, arranged in front of a building with large windows.

11. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Aaron

￥27,055

￥31,369 total

includes taxes & fees

Sep 7 - Sep 8

A modern hotel lounge with a view of the sea, featuring sofas, tables, and chairs arranged for guests.

Two wicker chairs with striped cushions on a balcony with a view of the sea.

A modern lobby with a curved sofa, two armchairs, a patterned rug, and a decorative wall panel.

A modern hotel room with a large window, yellow furniture, a white table, and a view of the city and water.

12. InterContinental San Diego by IHG

2.9 km from San Diego Natural History Museum

Eric Michael

￥43,942

￥61,699 total

includes taxes & fees

Sep 8 - Sep 9

A grand lobby with marble floors, a chandelier, and ornate doors.

A rooftop terrace with outdoor seating, umbrellas, and a view of the city skyline.

A grand lobby with marble floors, ornate chandeliers, and a seating area with patterned upholstery.

A hotel room with a large bed, a window with blinds, a bedside table with a lamp, and a framed picture on the wall.

13. Gaslamp Plaza Suites

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Kathryn

￥20,293

￥23,083 total

includes taxes & fees

Sep 2 - Sep 3

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern interior with a long wooden table, blue bar stools, a sofa, and large windows offering a view of the street.

A modern hotel room with a bed, a sofa, a dining area, and a kitchen.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

14. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Heather

￥22,144

￥31,233 total

includes taxes & fees

Sep 7 - Sep 8

A cityscape at dusk with illuminated buildings and a bridge in the distance.

A rooftop pool area with lounge chairs and umbrellas, surrounded by modern buildings and a cityscape at sunset.

A modern bar area with a curved counter, bar stools, and a seating area with tables and chairs.

A high-rise hotel with multiple floors, a prominent entrance, and a view of the surrounding cityscape and waterfront.

15. Courtyard by Marriott San Diego Downtown Little Italy

Little Italy, 2 km from San Diego Natural History Museum

Steven

￥25,742

￥29,846 total

includes taxes & fees

Sep 7 - Sep 8

A hotel room with a bed, a sofa, a dining table with chairs, and a window with curtains.

A swimming pool with a tiled edge, a blue lounge chair, and decorative wooden panels.

A modern interior with a sectional sofa, a glass coffee table, and large windows offering a view of the cityscape.

A gym with exercise equipment, a mirror, and a wooden floor.

16. Best Western Plus Bayside Inn

2.3 km from San Diego Natural History Museum

Ricardo

￥23,192

￥26,845 total

includes taxes & fees

Sep 7 - Sep 8

An outdoor dining area with a long table and chairs, a street view, and a building with a 'P' parking sign.

A multi-story hotel with a modern architectural design, featuring a prominent entrance and a well-lit street view.

A cozy restaurant with brick walls, wooden tables, and chairs. There are candles on the tables, and a chandelier hangs from the ceiling.

A reception area with a brick wall, palm tree artwork, and surfboards on display.

17. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Linda

￥19,511

￥22,622 total

includes taxes & fees

Sep 2 - Sep 3

A Hard Rock Hotel with a prominent Hard Rock Cafe sign, a large marquee, and a modern building facade.

An outdoor dining area with tables and chairs, a menu stand, and a view of a street with palm trees and a building in the background.

A modern bar area with a circular bar, multiple stools, and a large screen.

18. Hard Rock Hotel San Diego

Gaslamp Quarter, 2.9 km from San Diego Natural History Museum

Lisa

￥28,296

￥40,520 total

includes taxes & fees

Sep 7 - Sep 8

A cozy outdoor seating area with a fireplace, cushioned seating, and potted plants.

A modern bathroom with a large mirror, two sinks, and a seating area with two chairs and a small table.

The entrance to the Young Men's Christian Association building with a grand arched doorway, columns, and a staircase leading up to the entrance.

A spacious outdoor seating area with multiple tables and chairs, surrounded by large windows and potted plants.

19. The Guild Hotel, San Diego Downtown, a Marriott Tribute Portfolio Hotel

2.6 km from San Diego Natural History Museum

ZHENG

￥34,994

￥40,574 total

includes taxes & fees

Sep 2 - Sep 3

A historic building with a sign that reads "Old Town San Diego State Historic Park."

20. Hotel Indigo San Diego-Gaslamp Quarter by IHG

East Village, 2.5 km from San Diego Natural History Museum

Maraya

￥25,726

￥36,870 total

includes taxes & fees

Sep 8 - Sep 9

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 941 reviews	View
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 194 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 515 reviews	View
Keating Hotel By At Mine Hospitality	9.4 Exceptional 151 reviews	View
Lafayette Hotel & Club	9.4 Exceptional 1,946 reviews	View

Top San Diego Natural History Museum Hotel Reviews

The DEXTRO Little Italy, BW Premier Collection

10/10 Excellent

"The staff were really helpful and accommodating, it was a pleasure to stay there."

Hard Rock Hotel San Diego

10/10 Excellent

"The rooms are standard rooms."

Courtyard by Marriott San Diego Downtown Little Italy

10/10 Excellent

"The area surrounding this hotel was amazing. Saturday farmers market was really nice and the amount of places for eating and shopping within walking distance was great!! The only thing I would warn other about is the parking garage is made for compact cars and the cost was a little much but they have cheaper parking across the street that was much easier for us with a larger vehicle. All in all we had a beautiful trip and the stay was fantastic!!!!"

The Neon Elm Hotel

10/10 Excellent

"Good for my stay definitely close to some areas of you really want to walk but probably would be better off lyfting or using uber"

Manchester Grand Hyatt San Diego

10/10 Excellent

"The room appeared to be newly refurbished and the bathroom was nice. The main lobby looks amazing."

Keating Hotel By At Mine Hospitality

10/10 Excellent

"Super nice staff, very peaceful, and on the best spot of down town"

Marriott Vacation Club®, San Diego

10/10 Excellent

"great customer service here, didn’t park but luckily there are options nearby. Pretty receptive and had a great breakfast. 10/10 would recommend , will be staying here again."

Holiday Inn Express San Diego Downtown by IHG

10/10 Excellent

"Great stay helpful staff very comfy bed"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

See properties

A colorful courtyard with a tiled floor, a bench, and a fountain.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

See properties

A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its acclaimed art scene.

See properties

A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

See properties

A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

See properties

A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

See properties

A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

See properties

An art gallery with pink walls and ceiling, featuring classical paintings and a central table.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

See properties

Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 104 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and Manchester Grand Hyatt San Diego.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 104 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Museum of Art, San Diego Air and Space Museum, and Maritime Museum of San Diego feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at San Diego Civic Theatre, The Rady Shell at Jacobs Park, and Humphreys Concerts by the Bay.

Explore a world of travel with Expedia

Flights from San Diego

San Diego County Vacations

San Diego Vacation Rentals

Find hotels near San Diego Natural History Museum, San Diego from ￥9,815

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. City24 Hotel Little Italy Mission Hills

3. Kasa Little Italy San Diego

4. Keating Hotel By At Mine Hospitality

5. Lafayette Hotel & Club

6. Westgate Hotel

7. Gaslamp Hostel

8. The Horton Grand, Downtown/Gaslamp Quarter

9. Springhill Suites San Diego Downtown/Bayfront

10. The Artifact Inn

11. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

12. InterContinental San Diego by IHG

13. Gaslamp Plaza Suites

14. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

15. Courtyard by Marriott San Diego Downtown Little Italy

16. Best Western Plus Bayside Inn

17. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

18. Hard Rock Hotel San Diego

19. The Guild Hotel, San Diego Downtown, a Marriott Tribute Portfolio Hotel

20. Hotel Indigo San Diego-Gaslamp Quarter by IHG

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

The DEXTRO Little Italy, BW Premier Collection

Hard Rock Hotel San Diego

Courtyard by Marriott San Diego Downtown Little Italy

The Neon Elm Hotel

Manchester Grand Hyatt San Diego

Keating Hotel By At Mine Hospitality

Marriott Vacation Club®, San Diego

Holiday Inn Express San Diego Downtown by IHG

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

Explore a world of travel with Expedia