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Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel
ITH Mission Beach Backpacker HostelCentral Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (216 reviews)
The price is ¥15,970
¥18,006 total
includes taxes & fees
Jun 7 - Jun 8

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
Boardwalk Hotel: Bikes, Boards & Beach Gear IncludedMission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (380 reviews)
The price is ¥42,091
¥47,458 total
includes taxes & fees
Jun 10 - Jun 11

The Dana on Mission Bay
The Dana on Mission BayMission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,376 reviews)
The price is ¥33,419
¥43,010 total
includes taxes & fees
Jun 7 - Jun 8

Paradise Point Resort & Spa
Paradise Point Resort & SpaMission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,630 reviews)
The price is ¥40,806
¥55,367 total
includes taxes & fees
Jun 7 - Jun 8

The Wayfarer San Diego
The Wayfarer San DiegoMission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,787 reviews)
The price is ¥42,086
¥48,375 total
includes taxes & fees
Jun 7 - Jun 8

Bahia Resort Hotel
Bahia Resort HotelCentral Mission Beach, 2 km from Mission Bay
8.8 out of 10, Excellent, (2,110 reviews)
The price is ¥25,632
¥38,355 total
includes taxes & fees
Jun 7 - Jun 8

Holiday Inn Express San Diego - SeaWorld Area by IHG
Holiday Inn Express San Diego - SeaWorld Area by IHG2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,001 reviews)
The price is ¥28,782
¥33,084 total
includes taxes & fees
Jun 9 - Jun 10

San Diego Mission Bay Resort
San Diego Mission Bay ResortMission Bay, 1.5 km from Mission Bay
8.6 out of 10, Excellent, (1,460 reviews)
The price is ¥51,008
¥67,086 total
includes taxes & fees
Jul 5 - Jul 6

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,011 reviews)
The price is ¥23,906
¥27,479 total
includes taxes & fees
Jun 8 - Jun 9

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
Fairfield Inn & Suites by Marriott San Diego Pacific BeachPacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (898 reviews)
The price is ¥25,264
¥29,040 total
includes taxes & fees
Jun 28 - Jun 29

Hyatt Regency Mission Bay Spa and Marina
Hyatt Regency Mission Bay Spa and MarinaMission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very Good, (1,628 reviews)
The price is ¥31,820
¥45,035 total
includes taxes & fees
Jun 7 - Jun 8

Catamaran Resort and Spa
Catamaran Resort and SpaMission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,265 reviews)
The price is ¥40,806
¥55,411 total
includes taxes & fees
Jun 7 - Jun 8

Comfort Inn Sea World Area
Comfort Inn Sea World Area3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,733 reviews)
The price is ¥18,994
¥21,833 total
includes taxes & fees
Jun 7 - Jun 8

Best Western San Diego Pacific Beach/Mission Bay
Best Western San Diego Pacific Beach/Mission BayBay Park, 2.5 km from Mission Bay
8.2 out of 10, Very Good, (405 reviews)
The price is ¥16,041
¥18,439 total
includes taxes & fees
Jun 17 - Jun 18

GreenTree Inn San Diego Mission Bay
GreenTree Inn San Diego Mission BayPacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,151 reviews)
The price is ¥20,003
¥22,992 total
includes taxes & fees
Jun 7 - Jun 8

Surfer Beach Hotel
Surfer Beach HotelPacific Beach, 3 km from Mission Bay
8.2 out of 10, Very Good, (1,294 reviews)
The price is ¥37,654
¥42,529 total
includes taxes & fees
Jun 15 - Jun 16

SureStay Hotel by Best Western San Diego Pacific Beach
SureStay Hotel by Best Western San Diego Pacific BeachPacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1,570 reviews)
The price is ¥18,389
¥20,769 total
includes taxes & fees
Jun 9 - Jun 10

Heritage Inn San Diego
Heritage Inn San Diego2.5 km from Mission Bay
7.4 out of 10, Good, (1,495 reviews)
The price is ¥10,985
¥12,626 total
includes taxes & fees
Jun 28 - Jun 29

ITH Beach Bungalow Surf Hostel
ITH Beach Bungalow Surf HostelPacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very Good, (263 reviews)
The price is ¥10,290
¥11,601 total
includes taxes & fees
Jun 9 - Jun 10

Wyndham Garden San Diego Near SeaWorld
Wyndham Garden San Diego Near SeaWorld2.8 km from Mission Bay
7.4 out of 10, Good, (4,244 reviews)
The price is ¥18,077
¥20,778 total
includes taxes & fees
Jun 15 - Jun 16
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Compare popular hotels close to Mission Bay
Property | Star rating | Guest rating | Breakfast included | Pool | Spa | Pet friendly | WiFi included | |
|---|---|---|---|---|---|---|---|---|
![]() The Dana on Mission Bay | 9.0 Wonderful 4,376 reviews | View | ||||||
![]() ITH Mission Beach Backpacker Hostel | 9.4 Exceptional 216 reviews | View | ||||||
![]() Boardwalk Hotel: Bikes, Boards & Beach Gear Included | 9.4 Exceptional 380 reviews | View | ||||||
![]() Paradise Point Resort & Spa | 8.8 Excellent 2,630 reviews | View | ||||||
![]() The Wayfarer San Diego | 9.4 Exceptional 1,787 reviews | View |
Top Mission Bay Hotel Reviews

Heritage Inn San Diego
2/10 Terrible
Hotels near other Mission Bay attractions
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