Find hotels near Mission Bay, San Diego from ¥14,388

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Compare 7,374 hotels close to Mission Bay with room rates, reviews, and availability. Most hotels are fully refundable.

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

3.0 star property
9.4 out of 10, Exceptional, (211)
"Very nice place stay at, close to the beach"
The price is ¥26,845
¥30,268 total
includes taxes & fees
Sep 7 - Sep 8
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

3.5 star property
8.8 out of 10, Excellent, (3640)
"Great relaxing vacation"
The price is ¥24,875
¥28,593 total
includes taxes & fees
Aug 24 - Aug 25
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

2.0 star property
9.4 out of 10, Exceptional, (183)
"Great"
ITH Mission Beach Backpacker Hostel

Paradise Point Resort & Spa

4.0 star property
8.6 out of 10, Excellent, (2229)
"Its amazing place for vacation "
The price is ¥26,799
¥38,255 total
includes taxes & fees
Aug 25 - Aug 26
Paradise Point Resort & Spa

The Wayfarer San Diego

4.0 star property
9.4 out of 10, Exceptional, (1564)
"We loved our stay at wayfarer, such a lovely vibe and great location. "
The price is ¥38,740
¥44,529 total
includes taxes & fees
Aug 19 - Aug 20
The Wayfarer San Diego

Tower23 Hotel

4.0 star property
9.6 out of 10, Exceptional, (1001)
"Great location by the pier. Beds were great"
The price is ¥46,954
¥53,033 total
includes taxes & fees
Sep 2 - Sep 3
Tower23 Hotel

Ocean Park Inn

3.0 star property
9.4 out of 10, Exceptional, (1005)
"Great place to stay we really enjoyed it! "
Ocean Park Inn

Pacific Terrace Hotel

4.0 star property
9.6 out of 10, Exceptional, (1006)
"The unique and beautiful location of the hotel makes it a great place to visit. "
The price is ¥49,432
¥56,823 total
includes taxes & fees
Sep 1 - Sep 2
Pacific Terrace Hotel

The Beach Cottages

2.5 star property
9.2 out of 10, Wonderful, (1002)
"Everything is good "
The price is ¥18,399
¥21,149 total
includes taxes & fees
Sep 1 - Sep 2
The Beach Cottages

San Diego Mission Bay Resort

4.0 star property
8.4 out of 10, Very Good, (1289)
"This was a beautiful resort and the staff was wonderful."
The price is ¥27,819
¥38,612 total
includes taxes & fees
Aug 28 - Aug 29
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 star property
8.8 out of 10, Excellent, (1010)
"It was a great family friendly spot. Pool was a little small, but nice and staff was SUPER friendly!!"
The price is ¥18,693
¥21,487 total
includes taxes & fees
Sep 2 - Sep 3
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

3.5 star property
8.6 out of 10, Excellent, (1677)
"We loved it was pet friendly and walkable to all local beaches and restaurants. "
The price is ¥27,714
¥40,035 total
includes taxes & fees
Aug 20 - Aug 21
Bahia Resort Hotel

Hyatt Regency Mission Bay Spa and Marina

4.0 star property
8.4 out of 10, Very Good, (1504)
"Its a great hotel "
The price is ¥23,712
¥34,518 total
includes taxes & fees
Sep 1 - Sep 2
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

2.5 star property
8.8 out of 10, Excellent, (741)
"Definitely stay again"
The price is ¥18,988
¥21,826 total
includes taxes & fees
Aug 24 - Aug 25
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Comfort Inn Sea World Area

3.5 star property
8.6 out of 10, Excellent, (2641)
"Great stay"
The price is ¥14,388
¥16,537 total
includes taxes & fees
Aug 26 - Aug 27
Comfort Inn Sea World Area

Catamaran Resort and Spa

4.0 star property
8.4 out of 10, Very Good, (1021)
"Great view, great food, comfortable room!"
The price is ¥29,662
¥41,788 total
includes taxes & fees
Aug 24 - Aug 25
Catamaran Resort and Spa

GreenTree Inn San Diego Mission Bay

2.5 star property
8.0 out of 10, Very Good, (1627)
"Nice hotel, helpful staff, great breakfast, comfortable rooms."
The price is ¥14,783
¥16,993 total
includes taxes & fees
Aug 25 - Aug 26
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

2.5 star property
8.0 out of 10, Very Good, (1222)
"Great stay! "
The price is ¥15,380
¥17,371 total
includes taxes & fees
Aug 19 - Aug 20
SureStay Hotel by Best Western San Diego Pacific Beach

Surfer Beach Hotel

3.0 star property
8.0 out of 10, Very Good, (1062)
"Great location, awesome staff, and super comfortable beds. "
The price is ¥26,200
¥29,593 total
includes taxes & fees
Sep 2 - Sep 3
Surfer Beach Hotel

ITH Beach Bungalow Surf Hostel

2.0 star property
8.0 out of 10, Very Good, (241)
"Loved the location! Was able to take a nearby bus and train to San Diego ComicCon and back. Very convenient. "
The price is ¥21,301
¥24,017 total
includes taxes & fees
Aug 24 - Aug 25
ITH Beach Bungalow Surf Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

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Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 108 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.7 mi (1.2 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 1 mi (1.6 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 108 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel’s cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.