Find hotels near Mission Bay, San Diego from ¥10,880

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,739 reviews)
"Beautiful place. "
United States
Roxana
The price is ¥30,206
¥34,720 total
includes taxes & fees
Feb 23 - Feb 24
The Wayfarer San Diego

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,101 reviews)
"Great location and grounds!"
United States
Ethan
The price is ¥25,366
¥32,713 total
includes taxes & fees
Feb 22 - Feb 23
The Dana on Mission Bay

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (644 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ¥24,048
¥27,642 total
includes taxes & fees
Feb 22 - Feb 23
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (855 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ¥19,643
¥22,579 total
includes taxes & fees
Mar 15 - Mar 16
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.6 out of 10, Excellent, (2,428 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is ¥24,208
¥36,037 total
includes taxes & fees
Mar 1 - Mar 2
Paradise Point Resort & Spa

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,003 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is ¥18,437
¥21,192 total
includes taxes & fees
Feb 22 - Feb 23
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,887 reviews)
"Amazing place "
United States
Richard
The price is ¥25,810
¥38,295 total
includes taxes & fees
Mar 1 - Mar 2
Bahia Resort Hotel

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very Good, (1,350 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ¥30,881
¥43,702 total
includes taxes & fees
Mar 1 - Mar 2
San Diego Mission Bay Resort

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very Good, (273 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ¥15,146
¥17,409 total
includes taxes & fees
Mar 1 - Mar 2
Best Western San Diego Pacific Beach/Mission Bay

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,160 reviews)
"Location! "
United States
Jennifer
The price is ¥27,477
¥39,836 total
includes taxes & fees
Feb 22 - Feb 23
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,386 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ¥15,169
¥17,436 total
includes taxes & fees
Mar 1 - Mar 2
Comfort Inn Sea World Area

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very Good, (1,205 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ¥27,531
¥31,095 total
includes taxes & fees
Feb 23 - Feb 24
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1,950 reviews)
"Great stay"
United States
Lizeth
The price is ¥13,673
¥15,716 total
includes taxes & fees
Feb 22 - Feb 23
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1,538 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ¥13,266
¥14,983 total
includes taxes & fees
Feb 23 - Feb 24
SureStay Hotel by Best Western San Diego Pacific Beach

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,263 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ¥9,466
¥10,880 total
includes taxes & fees
Mar 4 - Mar 5
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,167 reviews)
"Good location friendly staff"
United States
Anya
The price is ¥13,766
¥15,824 total
includes taxes & fees
Feb 22 - Feb 23
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,104 reviews)
"Better than last time"
United States
benjamin
The price is ¥9,835
¥11,304 total
includes taxes & fees
Mar 10 - Mar 11
E-Z 8 Motel Old Town

Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
North Pacific Beach, 3.8 km from Mission Bay
9.8 out of 10, Exceptional, (1,005 reviews)
"Great location, quiet, excellent views, amazing staff, close to restaurants, we will be back. "
United States
Tammy
The price is ¥46,494
¥53,446 total
includes taxes & fees
Feb 22 - Feb 23
Pacific Terrace Hotel

Tower23 Hotel

Tower23 Hotel
4.0 star property
North Pacific Beach, 3.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,000 reviews)
"Helpful, friendly staff, including front desk and valet."
United States
Charles
The price is ¥51,054
¥57,663 total
includes taxes & fees
Mar 4 - Mar 5
Tower23 Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Star rating
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
207 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,739 reviews
View
2 outdoor pools, a heated pool, sun loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,101 reviews
View
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
644 reviews
View
Free continental breakfast
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
9.0
Wonderful
855 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 43 hotels and other accommodations you'll find within a mile.
Where is the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels can I expect to find close to Mission Bay?
Expedia has 43 hotels and other accommodations within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.
Where can I learn more about changing or cancelling my trip in the area near Mission Bay?
For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.

Explore a world of travel with Expedia