Find hotels near Mission Bay, San Diego from ￥9,287

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Our top choices for Mission Bay hotels

Living area
ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (201)
"great location and free parking available across the street. "
United States
Saquib
ITH Mission Beach Backpacker Hostel
View from property
The Wayfarer San Diego

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1708)
"Great location great staff great stay. Would stay again "
United States
Regina
The price is ￥24,733
￥28,429 total
includes taxes & fees
Dec 18 - Dec 19
The Wayfarer San Diego
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (401)
"The room was clean and the staff was very friendly."
United States
Li Li
The price is ￥18,409
￥21,160 total
includes taxes & fees
Dec 20 - Dec 21
Hampton Inn & Suites by Hilton San Diego SeaWorld
2 outdoor pools, a heated pool, sun loungers
The Dana on Mission Bay

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.7 km from Mission Bay
9.0 out of 10, Wonderful, (3917)
"Always love staying here. Staff was very courteous and the rooms very clean. "
United States
Eric
The price is ￥21,613
￥27,953 total
includes taxes & fees
Jan 8 - Jan 9, 2026
The Dana on Mission Bay
Free continental breakfast
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (800)
"good place to stay"
United States
Sisi
The price is ￥15,425
￥17,730 total
includes taxes & fees
Dec 21 - Dec 22
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
Suite, Multiple Beds | In-room safe, desk, laptop workspace, blackout drapes
Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1002)
"Friendly staff at check in and clean room/hotel "
United States
Stefanie
The price is ￥19,009
￥21,850 total
includes taxes & fees
Dec 16 - Dec 17
Holiday Inn Express San Diego - SeaWorld Area by IHG
5 outdoor pools, a heated pool, pool umbrellas, sun loungers
Paradise Point Resort & Spa

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.2 km from Mission Bay
8.6 out of 10, Excellent, (2352)
"Great stay, top tier service and excellent customer care "
Canada
Meriem
The price is ￥20,154
￥31,410 total
includes taxes & fees
Dec 15 - Dec 16
Paradise Point Resort & Spa
Breakfast, lunch, dinner served; Mediterranean cuisine
Bahia Resort Hotel

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1812)
"We love the Bahia resort every time we stay"
United States
William
The price is ￥19,819
￥31,456 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Bahia Resort Hotel
Lobby
Comfort Inn Sea World Area

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3135)
"good hotel "
United States
Lala
The price is ￥13,322
￥15,313 total
includes taxes & fees
Dec 16 - Dec 17
Comfort Inn Sea World Area
Property amenity
Catamaran Resort and Spa

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1106)
"Great place to vacation. "
United States
Manuel
The price is ￥22,312
￥33,969 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Catamaran Resort and Spa
Outdoor pool, open 7:00 AM to 10:00 PM, cabanas (surcharge)
San Diego Mission Bay Resort

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.6 km from Mission Bay
8.4 out of 10, Very Good, (1309)
"great stay! Food was great and my kids loved the pool and location"
United States
ANDREA
The price is ￥18,333
￥28,097 total
includes taxes & fees
Dec 14 - Dec 15
San Diego Mission Bay Resort
3 outdoor pools, cabanas (surcharge), pool umbrellas
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very Good, (1570)
"Loved our stay "
United States
Jeremy
The price is ￥20,099
￥31,347 total
includes taxes & fees
Dec 16 - Dec 17
Hyatt Regency Mission Bay Spa and Marina
Premium bedding, pillowtop beds, in-room safe, desk
Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.2 out of 10, Very Good, (190)
"Great stay, the staff was very friendly! "
United States
frances
The price is ￥10,608
￥12,194 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Best Western San Diego Pacific Beach/Mission Bay
Fishing
Surfer Beach Hotel

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very Good, (1178)
"Great staff, fantastic location."
Canada
Pawel
The price is ￥18,066
￥20,405 total
includes taxes & fees
Dec 18 - Dec 19
Surfer Beach Hotel
Lobby sitting area
GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1857)
"Courteous staff and clean room. "
United States
Rachel
The price is ￥13,126
￥15,087 total
includes taxes & fees
Dec 21 - Dec 22
GreenTree Inn San Diego Mission Bay
Free breakfast
SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1410)
"our stay was great and staff was supportive..."
United States
Ramesh
The price is ￥12,313
￥13,908 total
includes taxes & fees
Dec 24 - Dec 25
SureStay Hotel by Best Western San Diego Pacific Beach
Outdoor pool
Heritage Inn San Diego

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1158)
"Clean room, great location "
United States
Benjamin
The price is ￥8,535
￥9,811 total
includes taxes & fees
Dec 16 - Dec 17
Heritage Inn San Diego
Lobby
Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4111)
"Clean rooms and friendly staff."
United States
Aniket
The price is ￥13,174
￥15,143 total
includes taxes & fees
Dec 21 - Dec 22
Wyndham Garden San Diego Near SeaWorld
Exterior
E-Z 8 Motel Old Town

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.4 out of 10, (2079)
"Great staff, great room, great stay, great price!!!"
United States
Breanna
The price is ￥8,079
￥9,287 total
includes taxes & fees
Dec 14 - Dec 15
E-Z 8 Motel Old Town
Junior Suite, 2 Queen Beds, Ocean View | Hypo-allergenic bedding, in-room safe, desk, iron/ironing board
Pacific Terrace Hotel

Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
North Pacific Beach, 3.8 km from Mission Bay
9.6 out of 10, Exceptional, (1005)
"Amazing location and staff"
United States
Travis
The price is ￥26,510
￥30,475 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Pacific Terrace Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Mission Bay Hotel Reviews

The Dana on Mission Bay

The Dana on Mission Bay

10/10 Excellent
"Always love staying here. Staff was very courteous and the rooms very clean. "
Eric 2-night trip
Posted 1 day ago
The Dana on Mission Bay

Hotels near other Mission Bay attractions

Mission Bay Park

4.4/5 (165 reviews)
Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area, or enjoy its surfing spots.
See properties

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 45 hotels and other accommodations you'll find within a mile.
Where is the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.7 mi (1.2 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 1 mi (1.6 km) away.
How many hotels can I expect to find close to Mission Bay?
Expedia has 45 hotels and other accommodations within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.
Where can I learn more about changing or cancelling my trip in the area near Mission Bay?
For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.

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