Find hotels near Mission Bay, San Diego from ¥9,326

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Compare 7,509 hotels close to Mission Bay with room rates, reviews, and availability. Most hotels are fully refundable.

Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

2.0 star property
9.4 out of 10, Exceptional, (185)
"Great"
ITH Mission Beach Backpacker Hostel

The Wayfarer San Diego

4.0 star property
9.4 out of 10, Exceptional, (1593)
"Beach access and meal options were great. "
The price is ¥39,923
¥45,889 total
includes taxes & fees
Sep 21 - Sep 22
The Wayfarer San Diego

The Dana on Mission Bay

3.5 star property
8.8 out of 10, Excellent, (3721)
"We love staying here! Really nice rooms and pool and overall really nice and fun and relaxing environment!"
The price is ¥26,435
¥33,340 total
includes taxes & fees
Sep 28 - Sep 29
The Dana on Mission Bay

Paradise Point Resort & Spa

4.0 star property
8.6 out of 10, Excellent, (2263)
"Great place for families "
The price is ¥28,603
¥40,353 total
includes taxes & fees
Sep 22 - Sep 23
Paradise Point Resort & Spa

Tower23 Hotel

4.0 star property
9.6 out of 10, Exceptional, (1000)
"Wonderful. We will definitely stay here again. "
The price is ¥44,156
¥49,871 total
includes taxes & fees
Oct 14 - Oct 15
Tower23 Hotel

Ocean Park Inn

3.0 star property
9.4 out of 10, Exceptional, (1002)
"Great stay"
Ocean Park Inn

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

2.5 star property
9.0 out of 10, Wonderful, (760)
"Nice clean and affordable"
The price is ¥19,346
¥22,237 total
includes taxes & fees
Oct 5 - Oct 6
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 star property
8.8 out of 10, Excellent, (1004)
"Really clean hotel at very convenient location for Sea world or Marines graduation "
The price is ¥19,726
¥22,674 total
includes taxes & fees
Sep 21 - Sep 22
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

3.5 star property
8.6 out of 10, Excellent, (1705)
"Excellent checkin perfect room "
The price is ¥24,692
¥36,594 total
includes taxes & fees
Oct 13 - Oct 14
Bahia Resort Hotel

San Diego Mission Bay Resort

4.0 star property
8.4 out of 10, Very Good, (1293)
"Nice family resort. Relaxing by the bay and fun things to do for families. Convenient location and super nice staff. "
The price is ¥32,239
¥43,693 total
includes taxes & fees
Sep 21 - Sep 22
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

4.0 star property
8.4 out of 10, Very Good, (1538)
"Great area family friendly "
The price is ¥21,066
¥31,986 total
includes taxes & fees
Oct 8 - Oct 9
Hyatt Regency Mission Bay Spa and Marina

Hampton Inn & Suites San Diego Seaworld

2.5 star property
8.6 out of 10, Excellent, (52)
"Enjoyed our stay."
The price is ¥18,644
¥21,431 total
includes taxes & fees
Sep 21 - Sep 22
Hampton Inn & Suites San Diego Seaworld

Comfort Inn Sea World Area

3.5 star property
8.6 out of 10, Excellent, (2743)
"It was a great stay"
The price is ¥13,808
¥15,871 total
includes taxes & fees
Sep 23 - Sep 24
Comfort Inn Sea World Area

Catamaran Resort and Spa

4.0 star property
8.4 out of 10, Very Good, (1033)
"Lovely hotel, great location, very family friendly and great facilities! "
The price is ¥27,491
¥39,321 total
includes taxes & fees
Sep 14 - Sep 15
Catamaran Resort and Spa

Surfer Beach Hotel

3.0 star property
8.2 out of 10, Very Good, (1098)
"Excellent locating and really nice accommodations for the money"
The price is ¥23,333
¥26,353 total
includes taxes & fees
Sep 18 - Sep 19
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

2.5 star property
8.0 out of 10, Very Good, (1690)
"Amazing place to stay and rest with the family at a ver great spot close to everything "
The price is ¥12,997
¥14,939 total
includes taxes & fees
Oct 5 - Oct 6
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

2.5 star property
8.0 out of 10, Very Good, (1248)
"Great stay! "
The price is ¥9,326
¥10,533 total
includes taxes & fees
Sep 21 - Sep 22
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

2.0 star property
8.0 out of 10, Very Good, (246)
"Loved the location! Was able to take a nearby bus and train to San Diego ComicCon and back. Very convenient. "
The price is ¥16,428
¥18,522 total
includes taxes & fees
Sep 22 - Sep 23
ITH Beach Bungalow Surf Hostel

Wyndham Garden San Diego Near SeaWorld

3.0 star property
7.4 out of 10, Good, (3990)
"Very nice place to stay and very closed to seaword "
The price is ¥13,845
¥15,915 total
includes taxes & fees
Oct 2 - Oct 3
Wyndham Garden San Diego Near SeaWorld

Best Western San Diego Pacific Beach/Mission Bay

2.5 star property
7.2 out of 10, Good, (1289)
"Friendly staff!"
The price is ¥11,829
¥13,597 total
includes taxes & fees
Sep 14 - Sep 15
Best Western San Diego Pacific Beach/Mission Bay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

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Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 107 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.7 mi (1.2 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 1 mi (1.6 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 107 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel’s cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.