Find Boutique Hotels in Shinjuku

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

This weekend
Next weekend

Our top choices for Shinjuku boutique hotels

The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic
4.0 star property
Taito
9.4 out of 10, Exceptional, (1004)
"Service was exceptional and the hotel itself is amazing! Definitely recommend and will stay again happily! "
United States
Param
The price is ¥13,623
¥16,859 total
Jan 5 - Jan 6, 2026
The Gate Hotel Kaminarimon by Hulic

Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo
5.0 star property
Bunkyo
9.8 out of 10, Exceptional, (1080)
"We had an extra ordinary staying, we were enjoyed so much, Tnx"
United States
Efraim
The price is ¥37,440
¥49,551 total
Jan 5 - Jan 6, 2026
Hotel Chinzanso Tokyo

Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza
3.5 star property
Ginza
9.0 out of 10, Wonderful, (1001)
"Excellent hotel"
United States
Rodney
The price is ¥21,513
¥23,986 total
Jan 5 - Jan 6, 2026
Solaria Nishitetsu Hotel Ginza

The Tokyo Station Hotel

The Tokyo Station Hotel
4.5 star property
Chiyoda
9.8 out of 10, Exceptional, (1003)
"Great location and good breakfast!"
United States
Samantha C
The price is ¥38,994
¥51,444 total
Jan 29 - Jan 30, 2026
The Tokyo Station Hotel

The Peninsula Tokyo

The Peninsula Tokyo
5.0 star property
Chiyoda
9.4 out of 10, Exceptional, (1002)
"The room interior is old but clean."
United States
Dae Sik
The price is ¥112,000
¥142,080 total
Jan 5 - Jan 6, 2026
The Peninsula Tokyo

The Capitol Hotel Tokyu

The Capitol Hotel Tokyu
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1005)
"Lovely room with amazing amenities and service. Would stay again. "
United States
Julia
The price is ¥67,339
¥85,184 total
Jan 4 - Jan 5, 2026
The Capitol Hotel Tokyu

Palace Hotel Tokyo

Palace Hotel Tokyo
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1003)
"Beautiful and friendly with great breakfast choices "
United States
mirtha
The price is ¥87,680
¥110,915 total
Jan 25 - Jan 26, 2026
Palace Hotel Tokyo

Shangri-La Tokyo

Shangri-La Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (599)
"really nice location and great service"
United States
xue
The price is ¥93,000
¥118,045 total
Jan 29 - Jan 30, 2026
Shangri-La Tokyo
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Price trends for hotels in Shinjuku

Less expensive
More expensive
Next month
January
November
¥17,366
Month
Price
January
¥17,366
February
¥20,164
March
¥24,299
April
¥25,612
May
¥22,591
June
¥19,231
July
¥19,919
August
¥20,142
September
¥21,091
October
¥24,914
November
¥29,091
December
¥22,699
Price trend information excludes taxes and fees and is based on base rates for a nightly stay for 2 adults found in the last 7 days on our site and averaged for commonly viewed hotels in Shinjuku.

Top Shinjuku Hotel Reviews

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping, and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower, and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea®, and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for getting to and around Shinjuku. The closest major airport is Haneda Airport (HND), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station, and Higashi-shinjuku Station.

Explore a world of travel with Expedia