The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern lounge area with a blue sofa, yellow armchair, and a coffee table with a book and a potted plant.

A modern conference room with a wooden floor, white chairs, and a long table.

1. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Andrew

￥7,936

￥9,027 total

includes taxes & fees

Nov 2 - Nov 3

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

A modern bedroom with a large bed, a nightstand, a wall-mounted lamp, and a window with curtains.

A modern reception desk with a glass top, a large window offering a view, and a potted plant.

A modern interior with concrete walls, wooden beams, and a central planter with plants.

2. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

Jesus

￥18,246

￥25,926 total

includes taxes & fees

Oct 26 - Oct 27

A rooftop pool with lounge chairs and a city skyline in the background.

A modern living room with a large sliding glass door leading to a balcony, a leather sofa, a coffee table with a board game, and a flat-screen TV.

A high-rise building with a view of a harbor and sailboats.

A modern building with a sign reading "kasa little Italy" and a glass entrance.

3. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Jeremy

￥33,424

￥51,951 total

includes taxes & fees

Oct 6 - Oct 7

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A cafe with outdoor seating, a sign reading "INFUSED DRINKS NATURE'S KITCHEN," and a "BREAKFAST @ Cafe21" sign.

A modern living room with a brick wall, a flat-screen TV, a round red rug, and a seating area with a sofa and chairs.

A modern bathroom with a sink, mirror, and a bed with a red pillow.

4. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Jessica

￥9,338

￥23,025 total

includes taxes & fees

Oct 5 - Oct 6

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A checkered floor with round tables and chairs, a patterned ceiling, and large windows.

A large swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a building with a striped facade.

A dimly lit room with patterned walls, a wooden table, and a chair.

5. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Bryanna

￥42,191

￥48,496 total

includes taxes & fees

Oct 4 - Oct 5

A spacious dining area with high ceilings, large chandeliers, and a modern interior design.

A bar area with a high ceiling, patterned wall, and seating.

A multi-story hotel with a prominent 'PENDR' sign, large windows, and a corner entrance.

An outdoor dining area with wicker furniture and potted plants.

6. Pendry San Diego

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

Diego

￥46,442

￥62,479 total

includes taxes & fees

Oct 27 - Oct 28

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A harbor with boats, a large building, and a parking area.

A modern hotel with a prominent yellow and blue facade, large windows, and a well-lit entrance area with palm trees.

A dining area with round tables set for a formal event, large windows offering a view of the city, and elegant floral arrangements.

7. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Thomas Stanley

￥28,023

￥32,563 total

includes taxes & fees

Oct 25 - Oct 26

A hotel room with two beds, a large mirror, a wooden headboard, and a carpeted floor.

A modern interior with a seating area, a bookshelf, and a view through large windows.

A narrow alleyway with yellow buildings, a palm tree, and windows.

A modern living room with a wooden dining table, blue sofa, patterned chairs, and a large window with a view of the street.

8. Hotel Z

Gaslamp Quarter, 2.6 km from San Diego Natural History Museum

Tiffany

￥17,788

￥26,118 total

includes taxes & fees

Oct 8 - Oct 9

A restaurant with outdoor seating, brick walls, and decorative lighting.

A vintage car parked in front of a building with a sign that reads "Horton Grand Hotel."

A spacious lobby with high ceilings, large windows, and elegant furniture.

A spacious lobby with a bar area, seating arrangements, and a large chandelier.

9. The Horton Grand, Downtown/Gaslamp Quarter

2.8 km from San Diego Natural History Museum

Amy

￥24,205

￥32,446 total

includes taxes & fees

Oct 27 - Oct 28

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern kitchen with a built-in washer, a coffee maker, and a large window with a view of buildings.

A modern hotel room with a bed, a sofa, a dining area, and a kitchen.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

10. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Heather

￥27,083

￥36,900 total

includes taxes & fees

Oct 25 - Oct 26

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

A hotel lobby with a blue patterned carpet, a green leather sofa, a red leather sofa, and a wooden railing with plants.

An outdoor dining area with tables and orange umbrellas, surrounded by buildings including the WM. PENN HOTEL.

11. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

￥15,682

￥17,838 total

includes taxes & fees

Nov 2 - Nov 3

A rooftop terrace with outdoor seating, a view of the city, and a large window overlooking the harbor.

A hotel room with a large window offering a view of a marina with boats and a cityscape.

A hotel room with a large window offering a city view, a beige sofa with a red pillow, a floor lamp, and a small white table.

12. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Vasiliy

￥32,878

￥38,119 total

includes taxes & fees

Oct 25 - Oct 26

A hotel entrance with a stone archway, multiple windows, and potted plants.

A variety of potted plants, including cacti and other greenery, arranged in front of a building with large windows.

A cozy lounge area with wooden furniture, a fireplace, and lush tropical plants.

A modern bedroom with a large bed, a decorative headboard, a nightstand, and a view of the city through large windows.

13. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Tamara

￥31,329

￥36,324 total

includes taxes & fees

Oct 25 - Oct 26

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

A modern hotel with a prominent circular tower and a glass facade.

A bar area with a long counter, multiple stools, and hanging wicker lamps.

A marina with numerous boats docked, a large ship in the background, and a modern building with balconies.

14. Marriott Marquis San Diego Marina

3.1 km from San Diego Natural History Museum

Thomas Roy

￥44,868

￥59,462 total

includes taxes & fees

Oct 25 - Oct 26

A cityscape at dusk with high-rise buildings and a bridge in the distance.

A high-rise hotel with multiple floors, a prominent entrance, and a view of the surrounding cityscape and waterfront.

A modern bar area with a curved counter, bar stools, and a seating area with tables and chairs.

A rooftop pool area with lounge chairs and umbrellas, surrounded by modern buildings and a cityscape at sunset.

15. Courtyard by Marriott San Diego Downtown Little Italy

Little Italy, 2 km from San Diego Natural History Museum

Shumaila

￥26,779

￥31,049 total

includes taxes & fees

Oct 25 - Oct 26

A high-rise building with a glass facade, a clear sky, and a cityscape in the background.

A swimming pool with a tiled edge, a blue lounge chair, and decorative wooden panels.

A hotel room with a bed, a sofa, a dining table with chairs, and a window with curtains.

A modern interior with a sectional sofa, a glass coffee table, and large windows offering a view of the cityscape.

16. Best Western Plus Bayside Inn

2.3 km from San Diego Natural History Museum

Phyllis

￥23,495

￥27,195 total

includes taxes & fees

Oct 26 - Oct 27

A multi-level hotel lobby with numerous tables and chairs, a central seating area, and a staircase connecting the floors.

A spacious lobby with a reception desk, seating areas, and large potted plants.

A multi-level hotel lobby with a central seating area, multiple dining tables, and a decorative fountain.

An indoor swimming pool with clear blue water, surrounded by windows and blue chairs.

17. Embassy Suites by Hilton San Diego Bay Downtown

3.1 km from San Diego Natural History Museum

Maureen

￥35,895

￥47,351 total

includes taxes & fees

Oct 14 - Oct 15

A grand lobby with marble floors, a chandelier, and ornate doors.

A multi-story building with a prominent corner entrance, multiple windows, and a flag on top.

A rooftop terrace with outdoor seating, umbrellas, and a view of the city skyline.

A hotel room with a large bed, a window with blinds, a bedside table with a lamp, and a framed picture on the wall.

18. Gaslamp Plaza Suites

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Matthew

￥21,966

￥24,987 total

includes taxes & fees

Oct 5 - Oct 6

A cozy outdoor seating area with a fireplace, cushioned seating, and potted plants.

A modern bathroom with a large mirror, two sinks, and a seating area with two chairs and a small table.

The entrance to the Young Men's Christian Association building with a grand arched doorway, columns, and a staircase leading up to the entrance.

A spacious outdoor seating area with multiple tables and chairs, surrounded by large windows and potted plants.

19. The Guild Hotel, San Diego Downtown, a Marriott Tribute Portfolio Hotel

2.6 km from San Diego Natural History Museum

ZHENG

￥32,238

￥37,378 total

includes taxes & fees

Oct 28 - Oct 29

A hotel room with a balcony, a TV mounted on the wall, a round wooden table with two white chairs, and a grey sofa.

A dining area with a long wooden table set for multiple guests, surrounded by dark blue chairs.

A modern living room with a sofa, coffee table, and TV. There is a staircase leading to another level, and a large window with curtains.

A spacious lobby with a modern design, featuring a mix of seating options including sofas and chairs, a coffee table, and a decorative wall with abstract art.

20. The Westin San Diego Gaslamp Quarter

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Laura

￥31,329

￥40,916 total

includes taxes & fees

Oct 25 - Oct 26

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Star rating	Guest rating
Stay Classy Hostel	9.6 Exceptional 966 reviews	View
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 218 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 539 reviews	View
Keating Hotel By At Mine Hospitality	9.4 Exceptional 191 reviews	View
Lafayette Hotel & Club	9.4 Exceptional 2,042 reviews	View

Top San Diego Natural History Museum Hotel Reviews

Best Western Seven Seas

10/10 Excellent

"Close to everything. Next to freeway and rest / bar has very good grub to watch the game"

Marriott Vacation Club®, San Diego

10/10 Excellent

"The best customer service"

The Sofia Hotel

10/10 Excellent

"Good!"

Handlery Hotel

10/10 Excellent

"All good except they need to stock the vending machines"

Hampton Inn San Diego-Downtown

10/10 Excellent

"Close to train station and trolly and all the attractions! Nothing to complain about!"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

See properties

A blue sign with yellow text reading "SPANISH ART CENTER" above a tiled wall.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its fascinating museums.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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An art gallery with pink walls and ceiling, featuring classical paintings and a central table.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 102 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and Best Western Seven Seas.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 102 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Air and Space Museum, Maritime Museum of San Diego, and USS Midway Museum feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at Old Globe Theater, San Diego Civic Theatre, and The Rady Shell at Jacobs Park.

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Find hotels near San Diego Natural History Museum, San Diego from ￥9,027

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. Stay Classy Hostel

2. City24 Hotel Little Italy Mission Hills

3. Kasa Little Italy San Diego

4. Keating Hotel By At Mine Hospitality

5. Lafayette Hotel & Club

6. Pendry San Diego

7. Springhill Suites San Diego Downtown/Bayfront

8. Hotel Z

9. The Horton Grand, Downtown/Gaslamp Quarter

10. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

11. Gaslamp Hostel

12. Residence Inn by Marriott San Diego Downtown/Bayfront

13. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

14. Marriott Marquis San Diego Marina

15. Courtyard by Marriott San Diego Downtown Little Italy

16. Best Western Plus Bayside Inn

17. Embassy Suites by Hilton San Diego Bay Downtown

18. Gaslamp Plaza Suites

19. The Guild Hotel, San Diego Downtown, a Marriott Tribute Portfolio Hotel

20. The Westin San Diego Gaslamp Quarter

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

Best Western Seven Seas

Marriott Vacation Club®, San Diego

The Sofia Hotel

Handlery Hotel

Hampton Inn San Diego-Downtown

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

Explore a world of travel with Expedia