A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

Find hotels in San Juan Island, WA from ¥12,003

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Check prices for these dates

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Sep 16 - Sep 17
Tomorrow
Sep 17 - Sep 18
This weekend
Sep 18 - Sep 20
Next weekend
Sep 25 - Sep 27

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Our top choices for San Juan Island hotels

1. The Orca Inn

The Orca Inn
Friday Harbor
United States
Andrew
¥15,077
¥16,683 total
includes taxes & fees
Oct 1 - Oct 2
The Orca Inn

2. Discovery Inn

Discovery Inn
Friday Harbor
United States
Victoria
¥25,332
¥28,030 total
includes taxes & fees
Oct 17 - Oct 18
Discovery Inn

3. Trumpeter Inn

Trumpeter Inn
Friday Harbor
United States
James
¥35,672
¥39,364 total
includes taxes & fees
Oct 1 - Oct 2
Trumpeter Inn

4. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Nicole
¥35,478
¥39,257 total
includes taxes & fees
Oct 13 - Oct 14
Earthbox Inn & Spa

5. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Jennifer
¥27,117
¥30,005 total
includes taxes & fees
Oct 4 - Oct 5
Friday Harbor Suites

6. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Patricia
¥44,065
¥48,626 total
includes taxes & fees
Oct 8 - Oct 9
Snug Harbor Resort

7. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
¥24,821
¥27,464 total
includes taxes & fees
Oct 1 - Oct 2
Bird Rock Hotel

8. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
United States
Nicco
¥33,229
¥38,501 total
includes taxes & fees
Oct 12 - Oct 13
Roche Harbor Resort

9. Friday Harbor Grand B&B

Friday Harbor Grand B&B
Friday Harbor
United States
Andrew
¥56,742
¥62,786 total
includes taxes & fees
Sep 22 - Sep 23
Friday Harbor Grand B&B

10. Friday Harbor House

Friday Harbor House
Friday Harbor
United States
Robert
¥61,292
¥67,820 total
includes taxes & fees
Oct 6 - Oct 7
Friday Harbor House

11. Saturn's Return

Saturn's Return
Friday Harbor
United States
Margaret
¥49,081
¥54,160 total
includes taxes & fees
Oct 6 - Oct 7
Saturn's Return

12. Tucker House Inn

Tucker House Inn
Friday Harbor
United States
ZACHARY
¥24,413
¥27,013 total
includes taxes & fees
Oct 12 - Oct 13
Tucker House Inn

13. Cap Sante Inn

Cap Sante Inn
Anacortes
United States
Raul
¥8,496
¥12,003 total
includes taxes & fees
Sep 30 - Oct 1
Cap Sante Inn

14. Salish Inn

Salish Inn
Anacortes
United States
Paula
¥11,422
¥15,247 total
includes taxes & fees
Oct 1 - Oct 2
Salish Inn

15. Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn
Anacortes
United States
Lisa
¥15,218
¥16,878 total
includes taxes & fees
Oct 4 - Oct 5
Anacortes Ship Harbor Inn

16. Fidalgo Country Inn

Fidalgo Country Inn
Anacortes
United States
Amy
¥12,186
¥13,823 total
includes taxes & fees
Oct 3 - Oct 4
Fidalgo Country Inn

17. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
United States
Diane
¥27,768
¥30,643 total
includes taxes & fees
Oct 1 - Oct 2
Lopez Islander Resort

18. Deer Harbor Inn

Deer Harbor Inn
Deer Harbor
United States
Nemo
¥31,460
¥34,716 total
includes taxes & fees
Oct 16 - Oct 17
Deer Harbor Inn

19. Auld Holland Inn

Auld Holland Inn
Oak Harbor
United States
Laura
¥15,096
¥16,802 total
includes taxes & fees
Oct 8 - Oct 9
Auld Holland Inn

20. The Marina Inn

The Marina Inn
Anacortes
United States
Carol
¥23,909
¥26,824 total
includes taxes & fees
Sep 28 - Sep 29
The Marina Inn
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Stay near popular San Juan Island attractions

A marina with boats docked, surrounded by forested hills and a town with buildings.

Roche Harbor Marina

9.4/10 (332 reviews)
Explore the waterfront in Roche Harbor with a trip to Roche Harbor Marina. While you're in the area, stroll along the seaside.
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A lighthouse on a rocky coastline with the ocean in the foreground.

Lime Kiln Point State Park

9.6/10 (317 reviews)
Also known as Whale Watch Park, this diving site is one of the best places in the world to view wild orca pods from the shore.
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A lighthouse on a rocky cliff by the sea.

San Juan Island National Historic Park

9.4/10 (184 reviews)
You can learn about the history of Friday Harbor with a visit to San Juan Island National Historic Park. While you're in the area, stroll along the waterfront.
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People preparing kayaks on a riverbank with a small office and a red-roofed building in the background.

San Juan County Park

9.0/10 (87 reviews)
A hotspot for kayakers, this scenic and diverse campsite is the perfect retreat for both those wanting to relax and adventurists.
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A lighthouse on a grassy hill overlooking a body of water with a forested hill in the background.

Cape San Juan

9.4/10 (94 reviews)
Visit the Cattle Point Lighthouse and see if you can spot some seals at the southern tip of San Juan Island.
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Whale Museum

8.8/10 (89 reviews)
You can spend an afternoon browsing the exhibits at Whale Museum during your trip to Friday Harbor. While you're in the area, stroll along the waterfront.
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San Juan Islands Sculpture Park

8.8/10 (144 reviews)
Explore the great outdoors at San Juan Islands Sculpture Park, a lovely green space in Roche Harbor. While you're in the area, stroll along the seaside.
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San Juan Islands Museum of Art

8.4/10 (22 reviews)
You can spend an afternoon exploring the galleries in San Juan Islands Museum of Art during your travels in Friday Harbor. While you're in the area, stroll along the waterfront.
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Learn more about San Juan Island

San Juan Island entices visitors with its quaint harbor towns, forest trails and the chance to see a range of wildlife, including endangered orcas.

See all hotels in San Juan Island
A marina with numerous boats docked, a wooden pier, and a forested hill in the background.

Top San Juan Island Hotel Reviews

Bird Rock Hotel

Bird Rock Hotel

10/10 Excellent
"Great place to stay. Will visit again"
Mike 2-night trip
Posted less than an hour ago
Bird Rock Hotel
Coachman Inn & Suites

Coachman Inn & Suites

10/10 Excellent
"We really enjoyed this place. It was so clean and the service was wonderful. I would definitely come back. Thank You all so much for the great weekend! Joan"
Joan 1-night trip
Posted 12 hours ago
Coachman Inn & Suites
Roche Harbor Resort

Roche Harbor Resort

10/10 Excellent
"Quaint, charming! Had Capt Suite with view & private bath. Lovely view of harbor. Surprisingly quiet given hotel’s age.great dinner @McMillians. Definitely recommend. Sculpture part is lovely way to wander."
Lauran 2-night trip
Posted 23 hours ago
Roche Harbor Resort
Friday Harbor Suites

Friday Harbor Suites

8/10 Good
"Dated but the suite is of a nice size. Could use better sheets on the bed."
Susan 1-night trip
Posted 1 day ago
Friday Harbor Suites
Snug Harbor Resort

Snug Harbor Resort

10/10 Excellent
"Absolutely loved our stay. What a beautiful location and cabins. The rooms were clean, the kitchen was full with equipment if you wanted to cook. We got the “queen” beds, just a caution - felt a bit smaller than queen. But was ok with us"
Shamsun 1-night trip
Posted 2 days ago
Snug Harbor Resort
Discovery Inn

Discovery Inn

10/10 Excellent
"This place shines with all the personal touches…fresh flowers, slippers and robes, coffee station. It’s apparent that it is an on hands owner who focuses on the details."
Chris 3-night trip
Posted 4 days ago
Discovery Inn
Inn to the Woods B&B

Inn to the Woods B&B

10/10 Excellent
"The most charming B&B with a private hot tub, delicious breakfast, wonderful hosts, and 2 very cute dogs"
Betsy 3-night trip
Posted 6 days ago
Inn to the Woods B&B
Tucker House Inn

Tucker House Inn

10/10 Excellent
"Our stay was amazing! The staff is very responsive via the expedia messanger, quick check-in, super cozy room with stocked kitchen. The breakfast was great, including a to-go breakfast the day we departed - they thought of every detail. Nice location, little dog run area - I will be back!"
Paula 2-night trip
Posted 8 days ago
Tucker House Inn
Friday Harbor House

Friday Harbor House

8/10 Good
"The staff is not consistent. The restaurant greeter is not customer first. The large round table in the lobby means there’s literally nowhere to sit or congregate. Third floor has free coffee and sodas in the morning in the central area while there’s nothing on the main floor common area - for a very expensive room. Views are superb."
Heather 1-night trip
Posted 11 days ago
Friday Harbor House

More cheap stays in San Juan Island

Cap Sante Inn

Cap Sante Inn

906 9th St Anacortes WA
¥8,496
¥12,003 total
Sep 30 - Oct 1
includes taxes & fees
Cap Sante Inn
The Orca Inn

The Orca Inn

770 Mullis St Friday Harbor WA
¥15,077
¥16,683 total
Oct 1 - Oct 2
includes taxes & fees
8.2/10 Very Good! (152 reviews)
The Orca Inn
Auld Holland Inn

Auld Holland Inn

33575 State Route 20 Oak Harbor WA
¥15,096
¥16,802 total
Oct 8 - Oct 9
includes taxes & fees
8.2/10 Very Good! (1,000 reviews)
Auld Holland Inn
Anacortes Inn

Anacortes Inn

3006 Commercial Ave Anacortes WA
¥17,722
¥19,964 total
Oct 11 - Oct 12
includes taxes & fees
Anacortes Inn
Coachman Inn & Suites

Coachman Inn & Suites

32959 Highway 20 Oak Harbor WA
¥20,032
¥22,296 total
Oct 6 - Oct 7
includes taxes & fees
9.2/10 Wonderful! (1,001 reviews)
Coachman Inn & Suites
The Marina Inn

The Marina Inn

3300 Commercial Ave Anacortes WA
¥23,909
¥26,824 total
Sep 28 - Sep 29
includes taxes & fees
9.6/10 Exceptional! (1,002 reviews)
The Marina Inn

Hotels in San Juan Island with star-rating

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