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Check prices for these dates

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Sep 5 - Sep 7
In two weeks
Sep 12 - Sep 14
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Sep 26 - Sep 28
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Oct 24 - Oct 26

Cottages in San Juan Island

Our top choices for San Juan Island cottages

Waterfront Beach House close to everything!
Dining

Waterfront Beach House close to everything!

10.0 out of 10, Exceptional, (226)
"Proximity to the ferry was excellent. Great view of the water and Mt. Baker. Nice home and property. We had a great time."
Waterfront Beach House close to everything!
Cottage by the Sea Su
Outdoor dining

Cottage by the Sea Su

9.6 out of 10, Exceptional, (144)
"Great location that accepts pets. Gorgeous view that never gets old!"
The price is ￥22,265
￥38,748 total
includes taxes & fees
Sep 1 - Sep 2
Cottage by the Sea Su
Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey
Outdoor dining

Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey

10.0 out of 10, Exceptional, (217)
"Julie and Peter’s place is the perfect get away! Close to many local attractions to keep you entertained but beautiful and quiet for a cozy stay in. Truly paradise."
Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey
Mount Baker view free standing cottage with a small deck. Very clean and quiet!
Property grounds

Mount Baker view free standing cottage with a small deck. Very clean and quiet!

10.0 out of 10, Exceptional, (11)
"We enjoyed our stay in this cozy cottage! Very clean and close to everything including shopping and restaurants. We would definitely stay again, if the need arises. "
Mount Baker view free standing cottage with a small deck. Very clean and quiet!
Waterfront cottage with tidelands, creek and waterfall!
Property grounds

Waterfront cottage with tidelands, creek and waterfall!

9.8 out of 10, Exceptional, (10)
"Beautiful setting, lots of amenities in the house. "
The price is ￥72,988
￥126,722 total
includes taxes & fees
Sep 25 - Sep 26
Waterfront cottage with tidelands, creek and waterfall!
Beachfront cottage on Buoy Bay w/ beach access & boat moor
Terrace/patio

Beachfront cottage on Buoy Bay w/ beach access & boat moor

9.8 out of 10, Exceptional, (107)
"Both couples on our trip loved this stay. We enjoyed every second and can’t wait to come back."
Beachfront cottage on Buoy Bay w/ beach access & boat moor
Sandy Beachfront, Hot Tub, Pet-Friendly, Kayaking
Outdoor spa tub

Sandy Beachfront, Hot Tub, Pet-Friendly, Kayaking

Sandy Beachfront, Hot Tub, Pet-Friendly, Kayaking
Cottage-in-the-Barn on Dragonfly Farm
Exterior

Cottage-in-the-Barn on Dragonfly Farm

10.0 out of 10, Exceptional, (141)
"Sweet, little cottage with a lovely view of the garden. Wonderful for sleeping in, reading books and watching birds. The hummingbirds are not messing around. This was a good size for a family of three. Our dog loved the onsite walk to the pond and short path around the barn. "
Cottage-in-the-Barn on Dragonfly Farm
3BR Weaver's Cottage on Peaceful Guemes Island
Dining

3BR Weaver's Cottage on Peaceful Guemes Island

2.0 star property
9.8 out of 10, Exceptional, (117)
"This was our second time staying here and we had a great time!"
3BR Weaver's Cottage on Peaceful Guemes Island
Kick Back & Watch the Day Cruise By at Cornet Bay
Interior

Kick Back & Watch the Day Cruise By at Cornet Bay

9.6 out of 10, Exceptional, (45)
"Good location, plenty of room and quite area"
Kick Back & Watch the Day Cruise By at Cornet Bay
Lovely water and garden views. Two minutes drive to beaches, six to either town!
Property grounds

Lovely water and garden views. Two minutes drive to beaches, six to either town!

10.0 out of 10, Exceptional, (50)
"Nice location, views and Juanita/Marty took care of all of our needs."
Lovely water and garden views. Two minutes drive to beaches, six to either town!
Bayfront Home - Take Ferry to the San Juan Islands
House (3 Bedrooms) | Interior

Bayfront Home - Take Ferry to the San Juan Islands

3.0 star property
10.0 out of 10, Exceptional, (1)
Bayfront Home - Take Ferry to the San Juan Islands
Swan Lake Cottage by Avantstay Views + Firepit
House (2 Bedrooms) | Interior

Swan Lake Cottage by Avantstay Views + Firepit

3.0 star property
Swan Lake Cottage by Avantstay Views + Firepit
Orcas Island, Marina View #201
Property grounds

Orcas Island, Marina View #201

9.6 out of 10, Exceptional, (93)
"What a relaxing, beautiful place to stay for a long weekend!"
Orcas Island, Marina View #201
A Charming And Artistic Cottage Set In a Beautiful Garden
Fridge, microwave, oven, stovetop

A Charming And Artistic Cottage Set In a Beautiful Garden

9.8 out of 10, Exceptional, (187)
"Nice quiet place hardens are beautiful"
A Charming And Artistic Cottage Set In a Beautiful Garden
Cozy cottage, outdoor space & convenient location
Fridge, microwave, oven, stovetop

Cozy cottage, outdoor space & convenient location

9.4 out of 10, Exceptional, (54)
"Wonderful overall. Property was perfect for my family of 4 for a long weekend in and around Anacortes. Very walkable location. Kitchen, bath, beds, side yard were great. "
The price is ￥14,892
￥54,016 total
includes taxes & fees
Sep 5 - Sep 6
Cozy cottage, outdoor space & convenient location
Oak Harbor Hideaway - 5 Mi to Deception Pass!
Outdoor dining

Oak Harbor Hideaway - 5 Mi to Deception Pass!

3.0 star property
Oak Harbor Hideaway - 5 Mi to Deception Pass!
San Juan Island, Captains Cottage #101
Exterior

San Juan Island, Captains Cottage #101

10.0 out of 10, Exceptional, (70)
"The Captain’s Cottage is a delight! Beautifully built, terrific location and spotless. Our favorite rental ever on the island."
San Juan Island, Captains Cottage #101
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
Front of property - evening/night

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

3.0 star property
The price is ￥40,106
￥82,114 total
includes taxes & fees
Sep 2 - Sep 3
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
@ Marbella Lane - Seas the Bay Sanctuary
House (3 Bedrooms) | Beach/ocean view

@ Marbella Lane - Seas the Bay Sanctuary

3.0 star property
The price is ￥30,080
￥71,004 total
includes taxes & fees
Sep 1 - Sep 2
@ Marbella Lane - Seas the Bay Sanctuary
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Juan Island Hotel Reviews

Find out more about San Juan Island

Find out more about San Juan Island

San Juan Island Cottages information

Number of reviews
1,146
Accommodation
64 Cottages
Lowest Price
￥14,892
Highest Price
￥72,988

Explore a world of travel with Expedia

Explore a world of travel with Expedia

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some excellent cottages in San Juan Island, so get ready for a memorable vacay close to nature. If you have a set budget, select how much you're willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We'll help you find the perfect place whatever your plans or style of travel.
How can I find cheap cottages in San Juan Island?
Expedia can help you locate cheap cottages in San Juan Island. To book your dream stay in a few clicks, simply use the filter tool to refine your search by star rating, budget and amenities.