The Best Cheap Hotels in Jonanjima from ￥6,020 in 2026

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Our top choices for Jonanjima cheap hotels

A modern hotel building with multiple floors, large windows, and a flat roof.

1. Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

Ota

Charles

￥17,426 total

Dec 13 - Dec 14

A spacious lobby with modern seating, a ceiling with exposed pipes, and a large window with a view of greenery.

2. Tokyo Bay Shiomi Prince Hotel

Koto

Mei Sheng

￥31,738 total

Nov 30 - Dec 1

A building with a neon sign reading "TEPPAN Johnny" and a sign above it that says "BENJAMIN TOKYO".

3. Beagle Tokyo Hostel and Apartments

Haneda

GIA-YUN

￥12,409 total

Nov 30 - Dec 1

A hotel room with two beds, a bedside table, a trash bin, and a window with curtains.

4. Omori Happy Smile Hotel

Ota

Emily

￥6,650 total

Dec 1 - Dec 2

5. Minn Haneda Airport

Haneda

Jaison

￥8,880 total

Nov 23 - Nov 24

A spacious hotel lobby with a long corridor, chandeliers, and leather seating areas.

6. APA Hotel & Resort Roppongi Ekihigashi

Minato

CONNOR

￥13,528 total

Dec 6 - Dec 7

A traditional Japanese interior with tatami flooring, sliding doors, and a stone water feature.

7. Hotel Metropolitan Edmont Tokyo

Chiyoda

Xin

￥22,400 total

Dec 7 - Dec 8

A building with a large, lifelike dinosaur sculpture on the facade.

8. Hotel Gracery Shinjuku

Shinjuku

Julie

￥28,423 total

Dec 7 - Dec 8

A modern building with a wooden facade, a glass door, and a small wooden sign.

9. IKIDANE Cozy Hotel Haneda Airport

Haneda

Pip

￥15,059 total

Dec 9 - Dec 10

A modern bedroom with a wooden bed, a desk, and a chair.

10. Haneda 5-chome

Haneda

Arlaine

￥30,571 total

Nov 29 - Nov 30

View all properties

Compare popular hotels in Jonanjima

Property	Star rating	Guest rating
Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3	4.0 star property	9.2 Wonderful 13,329 reviews	View
Grand Nikko Tokyo Daiba	4.5 star property	9.6 Exceptional 2,357 reviews	View
The Royal Park Hotel Tokyo Haneda Airport Terminal 3	4.0 star property	9.0 Wonderful 7,313 reviews	View
Tmark City Hotel Tokyo Omori	3.5 star property	8.8 Excellent 1,128 reviews	View
Hotel JAL City Haneda Tokyo	3.5 star property	9.0 Wonderful 2,456 reviews	View

Top Jonanjima Hotel Reviews

Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

Ota

10/10 Excellent

sandy

Tokyo Bay Shiomi Prince Hotel

Koto

10/10 Excellent

Daniel

APA Hotel & Resort Roppongi Ekihigashi

Minato

10/10 Excellent

Navindra

Beagle Tokyo Hostel and Apartments

Haneda

10/10 Excellent

Anonymous traveler

A modern indoor swimming pool with a city view, surrounded by lounge chairs and a checkered floor pattern.

APA Hotel & Resort Ryogoku Ekimae Tower

Sumida

10/10 Excellent

Keyshawn

A spacious lobby with a reception desk, comfortable seating area, and large windows offering views of the city.

Hotel Sunroute Plaza Shinjuku

Shibuya

10/10 Excellent

I have been staying at this property for over 10 years when I come to Japan. It’s my favorite property because the property is conveniently located amongst great transportation and shopping. I had a quite disturbing experience when I was lining up at the front desk to ask about their takkyubin services. When it was my turn an older gentleman with salt and pepper hair color asked me in a disrespectful voice “check in?” I was taken aback by this. Since I am able to speak in Japanese fluently, I...

Nadia

A serene garden with a waterfall, lush greenery, and a modern building with large windows.

Hotel Niwa Tokyo

Chiyoda

10/10 Excellent

Our stay at Hotel Niwa made our Japan trip exceptional! As American travelers in our early 30s, we found this place to be a gem in Tokyo. The hotel's ambiance was simply beautiful, and the rooms were surprisingly spacious for a city known for compact spaces. Its prime location, just a 5-minute walk from a JR line, made navigating Tokyo incredibly convenient. Plus, being within walking distance of fantastic restaurants and yes, even the indispensable 7-11s, added immense value to our stay. The...

Derek

A dining room with a city view, large windows, and a long table set for a meal.

Hotel Metropolitan Tokyo Ikebukuro

Toshima

10/10 Excellent

This was a fantastic hotel! The location was incredible - it is walking distance to the Yamanote train line which connects you to other main attractions in Tokyo. There is also tons of great restaurants and shops in the area as well and a convenience store in the heart of the lobby making it easy to grab food, drinks or other supplies. The staff was very kind and helpful when shipping luggage to our next hotel in Kyoto. Lastly, you can take the Airport Limousine Shuttle Bus from Haneda and get...

Silvana

A modern building with a glass entrance, a well-lit facade, and a landscaped courtyard.

Daiwa Roynet Hotel Shimbashi

Minato

10/10 Excellent

Danny

Omori Happy Smile Hotel

Ota

10/10 Excellent

Emily

A bunk bed room with a window, a plant, and a ladder.

Shinagawa-Shuku Guest House & Tours - Hostel

Shinagawa

10/10 Excellent

Our stay at Guest House Shinagawa was beyond our expectations. Truly this as the best place we ever stay. My brother lost his passport, one of the front desk clerks went with him to the police station and helped him with the paper work, also calling to the train station to see if someone returned it. This is just to name a few. So cozy and fun to stay. Highly highly recommend this place, and surely my place if l go back to Tokyo. 5 STARS!!!!! Thank you!!!!

shayndel

A modern elevator area with dark wood paneling and a sleek, metallic elevator door.

Sotetsu Fresa Inn Higashi Shinjuku

Shinjuku

10/10 Excellent

10-15 min walk to Shinjuku. Multiple train entrances. Convenience stores every where. Friendly staff. The complaints about the dryers not being the best are technically accurate, but it’s cheap so it’s not a big deal at all. Staff was helpful even though I know basically zero Japanese. Held our bags after check-in since we had some time before our flight. 100% would stay again. Fair price and great location.

Ryan

A rooftop terrace with wooden tables and benches, overlooking a river with a bridge and city buildings in the background.

LYURO Tokyo Kiyosumi by THE SHARE HOTELS - Hostel

Koto

10/10 Excellent

Anonymous traveler

A hotel room with two beds, a dining table, chairs, and large windows offering a city view.

Ryogoku View Hotel

Sumida

10/10 Excellent

william A

A building entrance with a red brick facade, a wooden door, and a tiled pathway leading to a well-lit interior.

WAGOKORO - Hostel

Arakawa

10/10 Excellent

Susan

Frequently Asked Questions

What is Jonanjima like for travelers on a budget?

Check out cheap places to stay in Jonanjima on Expedia.com and book a vacation that matches your budget. You can scroll through a wide selection of accommodations with Member Prices to find great deals. Guided by our site's handy page filters, you can limit results by your price range, or by favorite amenities like free parking and free airport transportation. Or, try refining your search with the location filters to see affordable options around local attractions, such as Tokyo Bay or Tokyo Port's Wild Bird Park. While you browse, click the heart button to save your favorites so that you can find them later when you're ready to decide. Interested in a flight or a rental car too? Take a look at the travel packages offered under Bundle and Save and discover big savings when you book your transportation at the same time.

What is there to see and do in Jonanjima?

You don't have to spend a lot to find things to see and do in Jonanjima. You can budget for the top local attractions that interest you most, such as Tokyo Tower and Tokyo DisneySea®, and then look for sights and activities that cost little or nothing at all. Explore and snap photos of landmarks like Tokyo Imperial Palace and Sensoji Temple, or hunt for bargains with some shopping at DiverCity Tokyo Plaza.

How can I get to Jonanjima and get around on a budget?

Scoping out the transportation options in Jonanjima can help keep you on budget. The nearest airport is Haneda Airport (HND), 2.4 mi (3.9 km) away. However, if that doesn't suit your budget, the next closest is 36.5 mi (58.7 km) away: Narita Intl. Airport (NRT). Jonanjima might not have very many public transit choices so a car rental could be an economical alternative to see more of the area.

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Find Cheap Hotels in Jonanjima

Change your mind

Treat yourself

Be picky

Check prices for these dates

Our top choices for Jonanjima cheap hotels

1. Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

2. Tokyo Bay Shiomi Prince Hotel

3. Beagle Tokyo Hostel and Apartments

4. Omori Happy Smile Hotel

5. Minn Haneda Airport

6. APA Hotel & Resort Roppongi Ekihigashi

7. Hotel Metropolitan Edmont Tokyo

8. Hotel Gracery Shinjuku

9. IKIDANE Cozy Hotel Haneda Airport

10. Haneda 5-chome

Compare popular hotels in Jonanjima

Top Jonanjima Hotel Reviews

Hotel Villa Fontaine Grand Haneda Airport - Directly connected to Haneda Airport Terminal 3

10/10 Excellent

Frequently Asked Questions

What is Jonanjima like for travelers on a budget?

What is there to see and do in Jonanjima?

How can I get to Jonanjima and get around on a budget?

Explore a world of travel with Expedia