Top 10 Hotels in Southeast Minnesota, MN from ￥8,661 - Competitive Prices

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Our top choices for Southeast Minnesota hotels

A modern dining area with high tables, chairs, and pendant lighting.

A reception desk with a large digital screen displaying a cityscape and the word "happy."

A multi-story hotel with a modern design, featuring a prominent entrance with a covered area and a parking lot in front.

A hotel room with two beds, a desk with a computer, a chair, and a window with a view.

1. Hampton Inn & Suites Rochester-North

Rochester

Mark

￥16,079

￥18,510 total

includes taxes & fees

Nov 6 - Nov 7

An outdoor seating area with a fire feature, blue cushioned chairs, and a modern building with large windows in the background.

A modern dining area with round tables and chairs, a large painting on the wall, and a flat-screen TV mounted above a geometric-patterned wall.

A modern Hyatt House hotel with a prominent 'Hyatt House' sign, multiple floors, and a parking garage.

A modern bar area with seating and a counter.

2. Hyatt House Rochester/Mayo Clinic Area

Downtown Rochester

Arlan

￥19,922

￥22,937 total

includes taxes & fees

Nov 13 - Nov 14

A modern indoor patio with a fire feature, seating, and large windows.

A modern interior with a seating area, a bookshelf, and a window with a view of trees.

A modern living room with a fireplace, large windows, and a flat-screen TV mounted on the wall.

A modern hotel lobby with a large glass wall, a green wall mural, and a seating area with sofas and chairs.

3. EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kutzky Park

James

￥17,256

￥21,986 total

includes taxes & fees

Nov 6 - Nov 7

A Comfort Inn hotel with a stone facade, a covered entrance, and a parking area.

A spacious living room with a stone fireplace, blue sofas, and a flat-screen TV.

A modern dining area with wooden tables and chairs, a kitchen with granite countertops, and a view of the outdoors through large windows.

A hotel room with a blue sofa, a wooden coffee table, a bed with white linens, a TV, and a large mirror.

4. Comfort Inn & Suites West - Medical Center

Rochester

Tammy

￥13,535

￥15,583 total

includes taxes & fees

Nov 15 - Nov 16

An outdoor patio area with a concrete floor, wooden fence, and string lights.

A breakfast bar with a wooden counter, a coffee machine, and a refrigerator.

A Fairfield Inn & Suites hotel with a modern design, featuring a prominent entrance and a parking area.

5. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

Kutzky Park

Brien

￥18,213

￥20,968 total

includes taxes & fees

Nov 6 - Nov 7

A modern kitchen with a central island, wooden cabinets, and pendant lighting.

A hotel room with a bed, bedside table, and a window with curtains.

An outdoor seating area with tables and chairs, a neon sign, and flower arrangements.

A hotel exterior with a 'Townplace Suites' sign, outdoor seating area, and 'OPEN' signage.

6. TownePlace Suites by Marriott Rochester Mayo Clinic Area

Kutzky Park

Cory

￥21,491

￥24,742 total

includes taxes & fees

Nov 6 - Nov 7

A modern hotel lobby with multiple seating areas, including a central dining table with chairs, a bar area, and a seating section with cushioned chairs.

A modern lounge area with a curved sofa, a round table, and a seating area with chairs.

A modern conference room with a long table, multiple chairs, and a wooden partition.

A modern hotel room with a large bed, two bedside tables, and built-in lighting.

7. SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

Kutzky Park

Jackie

￥17,507

￥20,156 total

includes taxes & fees

Nov 1 - Nov 2

An outdoor seating area with wooden pillars, colorful striped cushions, and potted plants.

An indoor swimming pool with wooden ceiling beams, yellow chairs, and tables along the sides.

A modern hotel room with a bed, desk, and kitchenette.

A modern lounge area with a sofa, chairs, and tables.

8. Home2 Suites by Hilton Rochester Mayo Clinic Area

Rochester

howard

￥17,201

￥19,803 total

includes taxes & fees

Nov 7 - Nov 8

A restaurant with wooden tables and bar stools, a bar area with a counter, and multiple televisions mounted on the walls.

A bar with wooden stools and a neon sign.

A modern kitchen with wooden cabinets, a microwave, an oven, and a dishwasher.

9. AmericInn by Wyndham Rochester Near Mayo Clinic

Rochester

blake

￥11,834

￥13,624 total

includes taxes & fees

Nov 8 - Nov 9

A hotel room with a bed, a desk, a chair, a sofa, and artwork on the walls.

An indoor swimming pool with a checkered tile wall, a door labeled 'Mechanical Room,' and a window with a view outside.

A conference room with round tables and chairs, white walls, and a carpeted floor.

A hotel room with a desk, a television mounted on the wall, a small refrigerator, a microwave, a blue chair, and a door with a mirror.

10. Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

Terri

￥11,754

￥13,531 total

includes taxes & fees

Nov 7 - Nov 8

A reception area with a wooden reception desk, a "Welcome to the Bread & Butter State" sign, and a "Please Center" sign.

A coffee station with four coffee dispensers, a stack of disposable cups, and a tray with various coffee-related items.

A modern lounge area with seating arrangements, a reception desk, and a patterned wall.

A hotel room with a bed, a desk, a chair, a TV, and a bathroom visible through an open door.

11. Hampton Inn Rochester-South

Rochester

dennis

￥15,334

￥17,654 total

includes taxes & fees

Nov 1 - Nov 2

A hotel room with a large bed, a desk, a chair, a television, and a window with curtains.

A reception area with a wooden reception desk, a red doormat, and framed awards on the wall.

A hotel lobby with leather sofas, a stone fireplace, and a patterned carpet.

A compact laundry area with a washing machine, dryer, and a water fountain.

12. Econo Lodge Mayo Clinic Area

Rochester

Ashley

￥10,368

￥11,937 total

includes taxes & fees

Nov 15 - Nov 16

A modern hotel room with a dining area, a sofa, and a view of the landscape.

A hotel room with a large bed, a sofa, a desk with a TV, and a view of the city.

A rooftop terrace with outdoor seating and a city skyline in the background.

13. Hilton Rochester Mayo Clinic Area

Downtown Rochester

Jennifer

￥27,868

￥32,083 total

includes taxes & fees

Nov 7 - Nov 8

A modern hotel room with a large bed, a sofa, a small table, a desk, and a wardrobe.

An outdoor dining area with wooden beams, tables, and chairs.

A modern interior with a wooden ceiling, a large black shelving unit, and a refrigerator stocked with beverages.

A spacious outdoor dining area with multiple tables and chairs, large windows, and a wooden ceiling structure.

14. Hotel Indigo Rochester – Mayo Clinic Area by IHG

Downtown Rochester

Naomi

￥16,158

￥18,602 total

includes taxes & fees

Nov 14 - Nov 15

A spacious lobby with a reception desk, sofas, and a coffee table.

A hotel room with a large bed, a sofa, a TV, and a desk.

A Sleep Inn hotel with a covered entrance, stone pillars, and a clear blue sky.

A lobby with a brown sofa, yellow armchairs, a coffee table, and a clock on the wall.

15. Sleep Inn & Suites West-Near Medical Center

Rochester

Jacqueline

￥12,140

￥13,976 total

includes taxes & fees

Nov 22 - Nov 23

An outdoor patio with a brick floor, stone fireplace, and wooden pergola.

An indoor swimming pool with clear pool rules posted on the wall, a lifeguard chair, and a pool lift sign.

A modern hotel lobby with a stone wall fireplace, comfortable seating, and a chandelier.

A gym with exercise equipment, a clock, and a window with blinds.

16. Homewood Suites by Hilton Rochester Mayo Clinic Area / Saint Marys

Kutzky Park

Lin

￥17,201

￥19,803 total

includes taxes & fees

Nov 25 - Nov 26

A modern hotel lobby with a reception desk, seating area, and a dining space.

A hotel room with a bed, desk, chair, and a bathroom.

A modern breakfast area with a counter displaying various food items, a water dispenser, and a sign indicating a bakery section.

A Holiday Inn Express building with a stone facade and illuminated signage.

17. Holiday Inn Express Rochester South - Mayo Area by IHG

Rochester

Rick

￥12,863

￥14,810 total

includes taxes & fees

Nov 7 - Nov 8

A hotel reception desk with a wooden counter, a computer, and a vase with flowers.

A living room with stone walls, a fireplace, leather furniture, and a ceiling fan.

A hotel room with a large bed, a view through a sliding glass door to an outdoor area, a nightstand with a lamp, and a wooden headboard.

A hotel room with a large bed, a separate bathroom with a bathtub, and a skylight ceiling.

18. Baymont by Wyndham Kasson Rochester Area

Kasson

Dana

￥10,267

￥11,024 total

includes taxes & fees

Nov 1 - Nov 2

A modern kitchen with dark wood cabinets, stainless steel appliances, and a central island with seating.

A hotel pool area with a diving board, lounge chairs, and a lifeguard duty sign.

A compact hotel room with a kitchenette, a dining area, a seating area with a sofa and armchairs, and a large window with curtains.

An outdoor patio area with stone walls, outdoor seating, and landscaped gardens.

19. Staybridge Suites Rochester - Commerce Dr NW by IHG

Rochester

MATTHEW

￥18,197

￥20,949 total

includes taxes & fees

Nov 7 - Nov 8

A swimming pool with a glass ceiling, a neon sign for the KAFFLER HOTEL, and a view of the city skyline at dusk.

A hotel entrance with a modern design, large windows, and a sign indicating it's a Grand Hotel.

A bar area with a long counter, multiple bar stools, and a television mounted above the bar.

A hotel room with a large bed, a desk, a chair, a microwave, and a framed picture on the wall.

20. Kahler Grand Hotel

Downtown Rochester

Christina

￥22,199

￥25,556 total

includes taxes & fees

Nov 7 - Nov 8

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Hotels recommended for families in Southeast Minnesota

Hampton Inn & Suites Rochester-North

Rochester

￥16,079

￥18,510 total

includes taxes & fees

Nov 6 - Nov 7

EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kutzky Park

￥17,256

￥21,986 total

includes taxes & fees

Nov 6 - Nov 7

Hyatt House Rochester/Mayo Clinic Area

Downtown Rochester

￥19,922

￥22,937 total

includes taxes & fees

Nov 13 - Nov 14

Comfort Inn & Suites West - Medical Center

Rochester

￥13,535

￥15,583 total

includes taxes & fees

Nov 15 - Nov 16

Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

Kutzky Park

￥18,213

￥20,968 total

includes taxes & fees

Nov 6 - Nov 7

TownePlace Suites by Marriott Rochester Mayo Clinic Area

Kutzky Park

￥21,491

￥24,742 total

includes taxes & fees

Nov 6 - Nov 7

Home2 Suites by Hilton Rochester Mayo Clinic Area

Rochester

￥17,201

￥19,803 total

includes taxes & fees

Nov 7 - Nov 8

Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

￥11,754

￥13,531 total

includes taxes & fees

Nov 7 - Nov 8

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Stay near popular Southeast Minnesota attractions

Villa Bellezza

8.4/10 (31 reviews)

You can enjoy a tasting or tour at Villa Bellezza during your travels to Pepin. While you're in the area, stroll along the lakeside.

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Mayo Civic Center

9.2/10 (818 reviews)

Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.

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Apache Mall

8.6/10 (1,101 reviews)

During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Rochester Recreation Center

8.0/10 (205 reviews)

Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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National Volleyball Center

7.8/10 (151 reviews)

Catch an event at National Volleyball Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Welch Village Ski Area

8.6/10 (16 reviews)

Hit the slopes in Welch with a visit to Welch Village Ski Area. Stroll along the area's riverfront or simply enjoy its coffeehouses.

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Shattuck-St. Mary's School

9.6/10 (69 reviews)

Enjoy the collegiate vibe when you visit Shattuck-St. Mary's School, during your trip to Faribault. Visit the shops in this family-friendly area, or simply enjoy its coffeehouses.

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Mayowood Mansion

9.4/10 (29 reviews)

You can spend time browsing the exhibits at Mayowood Mansion in Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Learn more about Southeast Minnesota

Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.

See all hotels in Southeast Minnesota

A lake surrounded by dense forest and a distant hill with a fort.

Top Southeast Minnesota Hotel Reviews

Express Suites Riverport Inn & Suites

8/10 Good

"Great breakfast. Beds a little firm. Thanks"

Hotel Indigo Rochester – Mayo Clinic Area by IHG

10/10 Excellent

"Staff was extremely helpful and knowledgeable. Restaurant was clean and food was great. Very close to everything and parking was easy and inexpensive."

AmericInn by Wyndham Rochester Near Mayo Clinic

10/10 Excellent

"nice breakfast"

Treasure Island Resort & Casino

10/10 Excellent

"Thank you"

Hyatt House Rochester/Mayo Clinic Area

10/10 Excellent

"B"

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

10/10 Excellent

"We had returned for another round of days at Mayo Clinic. We stayed here for a previous appointment at Mayo. The Staff is very friendly and helpful. The Shuttle Staff, Shelly and Eric got us to our appointments safely and in a timely manner. There is alot of construction going on in Rochester making commuting to Mayo Clinic a very anxious prospect. The Shuttle service is a Blessing. Rooms are clean, beds are comfortable with enough pillows to make you feel comfortable. Breakfast was good and actually earlier than posted which is amazing in light of needing to catch an early Shuttle. Our room lock stopped working after a long day at Mayo. The desk staff notified maintenance who promptly came and changed the battery and everything was good again. Would like to thank the staff for making a stressful visit so much easier."

Brentwood Inn & Suites

8/10 Good

"While the property is old, I found it very clean. Location is excellent. Bed was not great. Staff was incredibly accommodating."

Kahler Inn and Suites - Mayo Clinic Area

10/10 Excellent

"The hotel was very nice and convenient for travel to the Mayo Clinic with direct access to the underground walk way. The room was clean and nice to have the continental breakfast option. Construction was taking place outside of the hotel to improve the Mayo Clinic buildings in the area. The windows seemed to be rather low on their sound proofing ability. Almost seemed like the windows were open at times."

EVEN Hotel Rochester - Mayo Clinic Area by IHG

10/10 Excellent

"Close to Mayo with hourly shuttle service. Also parking underground was secure. Good breakfast included and the bar/restaurant very nice too. We will stay here again when my husband gets his other shoulder done."

More cheap stays in Southeast Minnesota

Super 8 by Wyndham Winona MN

1025 Sugar Loaf Rd Winona MN

￥7,624

￥8,661 total

Nov 15 - Nov 16

includes taxes & fees

Quality Inn near Medical Center

5708 Bandel Road NW Rochester MN

￥9,867

￥11,359 total

Nov 15 - Nov 16

includes taxes & fees

Med City Inn & Suites - Mayo Clinic Area

435 16th Ave Nw Rochester MN

￥11,147

￥12,835 total

Nov 25 - Nov 26

includes taxes & fees

7.8/10 Good! (1,033 reviews)

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

1517 16th St Sw Rochester MN

￥14,846

￥17,092 total

Oct 29 - Oct 30

includes taxes & fees

8.2/10 Very Good! (1,004 reviews)

Cobblestone Hotel & Suites - Austin

1000 16th Avenue NW Austin MN

￥16,801

￥18,629 total

Oct 26 - Oct 27

includes taxes & fees

8.8/10 Excellent! (835 reviews)

Brentwood Inn & Suites

123 Fourth Ave. NW Rochester MN

￥18,824

￥21,671 total

Oct 29 - Oct 30

includes taxes & fees

8.8/10 Excellent! (1,005 reviews)

Hotels in Southeast Minnesota with star-rating

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Find hotels in Southeast Minnesota, MN from ￥8,661

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Southeast Minnesota

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Southeast Minnesota hotels

1. Hampton Inn & Suites Rochester-North

2. Hyatt House Rochester/Mayo Clinic Area

3. EVEN Hotel Rochester - Mayo Clinic Area by IHG

4. Comfort Inn & Suites West - Medical Center

5. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

6. TownePlace Suites by Marriott Rochester Mayo Clinic Area

7. SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

8. Home2 Suites by Hilton Rochester Mayo Clinic Area

9. AmericInn by Wyndham Rochester Near Mayo Clinic

10. Comfort Inn & Suites Rochester South Mayo Clinic

11. Hampton Inn Rochester-South

12. Econo Lodge Mayo Clinic Area

13. Hilton Rochester Mayo Clinic Area

14. Hotel Indigo Rochester – Mayo Clinic Area by IHG

15. Sleep Inn & Suites West-Near Medical Center

16. Homewood Suites by Hilton Rochester Mayo Clinic Area / Saint Marys

17. Holiday Inn Express Rochester South - Mayo Area by IHG

18. Baymont by Wyndham Kasson Rochester Area

19. Staybridge Suites Rochester - Commerce Dr NW by IHG

20. Kahler Grand Hotel

Hotels recommended for families in Southeast Minnesota

Hampton Inn & Suites Rochester-North

EVEN Hotel Rochester - Mayo Clinic Area by IHG

Hyatt House Rochester/Mayo Clinic Area

Comfort Inn & Suites West - Medical Center

Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

TownePlace Suites by Marriott Rochester Mayo Clinic Area

Home2 Suites by Hilton Rochester Mayo Clinic Area

Comfort Inn & Suites Rochester South Mayo Clinic

Stay near popular Southeast Minnesota attractions

Villa Bellezza

Mayo Civic Center

Apache Mall

Rochester Recreation Center

National Volleyball Center

Welch Village Ski Area

Shattuck-St. Mary's School

Mayowood Mansion

Learn more about Southeast Minnesota

Top Southeast Minnesota Hotel Reviews

Express Suites Riverport Inn & Suites

Hotel Indigo Rochester – Mayo Clinic Area by IHG

AmericInn by Wyndham Rochester Near Mayo Clinic

Treasure Island Resort & Casino

Hyatt House Rochester/Mayo Clinic Area

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

Brentwood Inn & Suites

Kahler Inn and Suites - Mayo Clinic Area

EVEN Hotel Rochester - Mayo Clinic Area by IHG

More cheap stays in Southeast Minnesota

Super 8 by Wyndham Winona MN

Quality Inn near Medical Center

Med City Inn & Suites - Mayo Clinic Area

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

Cobblestone Hotel & Suites - Austin

Brentwood Inn & Suites

Hotels in Southeast Minnesota with star-rating

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