A lighthouse on a rocky coastline with the ocean in the foreground.

Search San Juan Islands Cottage Rentals

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

In two weeks
In two months
In three months
In four months

Our top choices for San Juan Islands cottages

1. Waterfront cottage with tidelands, creek and waterfall!

Waterfront cottage with tidelands, creek and waterfall!
Eastsound
10.0 out of 10, Exceptional, (22 reviews)
"The property was in a great location and well stocked. We loved finding sea glass on the property's beach."
United States
Megan W.
The price is ¥70,491
¥126,234 total
includes taxes & fees
Aug 29 - Aug 30
Waterfront cottage with tidelands, creek and waterfall!

2. Cottage by the Sea

Cottage by the Sea
Anacortes
9.6 out of 10, Exceptional, (164 reviews)
"We loved our stay at this place!! Our thanks to our nice hosts!"
United States
Denise
The price is ¥27,595
¥46,475 total
includes taxes & fees
Sep 2 - Sep 3
Cottage by the Sea

3. Cozy cottage, private outdoor space & convenient location

Cozy cottage, private outdoor space & convenient location
Anacortes
9.0 out of 10, Wonderful, (69 reviews)
"Great location, close to everything in downtown Anacortes. Nicely furnished. comfortable and quiet. "
United States
Beverly A.
The price is ¥16,437
¥55,382 total
includes taxes & fees
Aug 23 - Aug 24
Cozy cottage, private outdoor space & convenient location

4. Waterfront Bellingham Bliss: Steps to Beach!

Waterfront Bellingham Bliss: Steps to Beach!
3.0 star property
Bellingham
10.0 out of 10, Exceptional, (1 review)
"The hosts were very friendly and accessible. The view was beautiful. The space was very clean."
United States
Rebecca
The price is ¥28,956
¥57,873 total
includes taxes & fees
Aug 30 - Aug 31
Waterfront Bellingham Bliss: Steps to Beach!

5. @ Marbella Lane Wave HS W/ev Charger, Oceanfront!

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
3.0 star property
Oak Harbor
The price is ¥50,381
¥111,435 total
includes taxes & fees
Sep 3 - Sep 4
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

6. Modern Farm Cottage on Private Acreage in Charming Point Roberts, WA

Modern Farm Cottage on Private Acreage in Charming Point Roberts, WA
Point Roberts
10.0 out of 10, Exceptional, (9 reviews)
"Easy to schedule, accommodations were very nice. Beautiful property would defiantly recommend."
United States
Jeff O.
The price is ¥15,032
¥32,436 total
includes taxes & fees
Aug 24 - Aug 25
Modern Farm Cottage on Private Acreage in Charming Point Roberts, WA

7. Puget Sound Cottage w/ Private Community Beach!

Puget Sound Cottage w/ Private Community Beach!
Coupeville
10.0 out of 10, Exceptional, (19 reviews)
"A wonderful stay!"
United States
Eva S.
The price is ¥47,627
¥102,137 total
includes taxes & fees
Aug 27 - Aug 28
Puget Sound Cottage w/ Private Community Beach!

8. Cozy & Retro Lake Samish Cabin

Cozy & Retro Lake Samish Cabin
Bellingham
8.0 out of 10, Very Good, (2 reviews)
"Simply a lovely spot- exactly what we needed and were hoping for. Checking in and out was convenient. The whole property is very thoughtfully apportioned for maximum relaxation and enjoyment. "
United States
Holly C.
The price is ¥32,437
¥70,365 total
includes taxes & fees
Sep 7 - Sep 8
Cozy & Retro Lake Samish Cabin

9. @ Marbella Lane - Seas the Bay Sanctuary

@ Marbella Lane - Seas the Bay Sanctuary
3.0 star property
Oak Harbor
8.0 out of 10, Very Good, (3 reviews)
"Yes place was very nice "
United States
Luke
The price is ¥49,051
¥109,958 total
includes taxes & fees
Sep 7 - Sep 8
@ Marbella Lane - Seas the Bay Sanctuary

10. Waterfront Home w/ Dock, Hot Tub, Fire Pit

Waterfront Home w/ Dock, Hot Tub, Fire Pit
3.0 star property
Oak Harbor
The price is ¥53,956
¥130,913 total
includes taxes & fees
Aug 23 - Aug 24
Waterfront Home w/ Dock, Hot Tub, Fire Pit

11. Puget Sound Cottage w/ Private Community Beach!

Puget Sound Cottage w/ Private Community Beach!
3.0 star property
Coupeville
The price is ¥57,754
¥101,800 total
includes taxes & fees
Aug 27 - Aug 28
Puget Sound Cottage w/ Private Community Beach!
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Islands Hotel Reviews

Find out more about San Juan Islands

San Juan Islands Cottages information

Number of reviews
220
Accommodation
32 Cottages
Lowest Price
¥32,436
Highest Price
¥130,913

Frequently asked questions

Why book your cottage in San Juan Islands with Expedia?
We think that vacations should be a breeze, so if you're after cottages in San Juan Islands at a nice price, Expedia is here to help. Save money and pick a cheap option far from the hustle and bustle, or splurge on an upmarket cottage to really pamper your favorite people.
How can I find cheap cottages in San Juan Islands?
With Expedia's handy filter tool, booking cheap cottages in San Juan Islands is a snap. To discover accommodations that'll make your wallet happy, tailor your search results by star rating, amenities and budget.

Explore a world of travel with Expedia