A lighthouse on a rocky coastline with the ocean in the foreground.

Search San Juan Islands Cottage Rentals

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

In two weeks
In two months
In three months
In four months

Our top choices for San Juan Islands cottages

1. Waterfront cottage with tidelands, creek and waterfall!

Waterfront cottage with tidelands, creek and waterfall!
Eastsound
10.0 out of 10, Exceptional, (23 reviews)
"It is a great place to stay. The host has exquisite taste. The house is meticulously organized."
United States
Dipayan
The price is ¥79,096
¥137,327 total
includes taxes & fees
Oct 1 - Oct 2
Waterfront cottage with tidelands, creek and waterfall!

2. Cottage by the Sea

Cottage by the Sea
Anacortes
9.6 out of 10, Exceptional, (164 reviews)
"We loved our stay at this place!! Our thanks to our nice hosts!"
United States
Denise
The price is ¥20,972
¥38,363 total
includes taxes & fees
Sep 2 - Sep 3
Cottage by the Sea

3. Waterfront Bellingham Bliss: Steps to Beach!

Waterfront Bellingham Bliss: Steps to Beach!
3.0 star property
Bellingham
10.0 out of 10, Exceptional, (1 review)
"The hosts were very friendly and accessible. The view was beautiful. The space was very clean."
United States
Rebecca
The price is ¥29,242
¥58,444 total
includes taxes & fees
Sep 14 - Sep 15
Waterfront Bellingham Bliss: Steps to Beach!

4. @ Marbella Lane Wave HS W/ev Charger, Oceanfront!

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
3.0 star property
Oak Harbor
The price is ¥39,628
¥100,037 total
includes taxes & fees
Sep 23 - Sep 24
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

5. Modern Farm Cottage on Private Acreage in Charming Point Roberts, WA

Modern Farm Cottage on Private Acreage in Charming Point Roberts, WA
Point Roberts
10.0 out of 10, Exceptional, (10 reviews)
"Easy to schedule, accommodations were very nice. Beautiful property would defiantly recommend."
United States
Jeff O.
The price is ¥15,209
¥33,137 total
includes taxes & fees
Sep 6 - Sep 7
Modern Farm Cottage on Private Acreage in Charming Point Roberts, WA

6. Puget Sound Cottage w/ Private Community Beach!

Puget Sound Cottage w/ Private Community Beach!
Coupeville
10.0 out of 10, Exceptional, (20 reviews)
"A wonderful stay!"
United States
Eva S.
The price is ¥48,097
¥103,784 total
includes taxes & fees
Oct 2 - Oct 3
Puget Sound Cottage w/ Private Community Beach!

7. @ Marbella Lane - Seas the Bay Sanctuary

@ Marbella Lane - Seas the Bay Sanctuary
3.0 star property
Oak Harbor
8.0 out of 10, Very Good, (3 reviews)
"Yes place was very nice "
United States
Luke
The price is ¥44,581
¥105,539 total
includes taxes & fees
Sep 13 - Sep 14
@ Marbella Lane - Seas the Bay Sanctuary

8. Puget Sound Cottage w/ Private Community Beach!

Puget Sound Cottage w/ Private Community Beach!
3.0 star property
Coupeville
The price is ¥58,323
¥102,804 total
includes taxes & fees
Oct 2 - Oct 3
Puget Sound Cottage w/ Private Community Beach!
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Islands Hotel Reviews

Find out more about San Juan Islands

San Juan Islands Cottages information

Number of reviews
221
Accommodation
30 Cottages
Lowest Price
¥33,137
Highest Price
¥137,327

Frequently asked questions

Why book your cottage in San Juan Islands with Expedia?
We think that vacations should be a breeze, so if you're after cottages in San Juan Islands at a nice price, Expedia is here to help. Save money and pick a cheap option far from the hustle and bustle, or splurge on an upmarket cottage to really pamper your favorite people.
How can I find cheap cottages in San Juan Islands?
With Expedia's handy filter tool, booking cheap cottages in San Juan Islands is a snap. To discover accommodations that'll make your wallet happy, tailor your search results by star rating, amenities and budget.

Explore a world of travel with Expedia