Top 10 Hotels in Clayton, NY from ￥10,239 - Competitive Prices

A snowy town with a large building complex, a frozen lake, and a snow-covered landscape.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Clayton

Pet friendly

Pool

Hot tub

Apartment

Condo

Family friendly

Cottage

Waterpark

Check prices for these dates

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Clayton hotels

A multi-story hotel with a well-maintained lawn and outdoor seating area.

A bar area with a sign reading "1000 Islands Bar" and various bottles and glasses.

An outdoor seating area with a fire pit, chairs, and tables.

A lobby with a stone wall, a round table with a vase of flowers, and a chandelier.

1. 1000 Islands Harbor Hotel

Clayton

julie

￥30,901

￥34,301 total

includes taxes & fees

Sep 27 - Sep 28

A wooden-paneled room with two framed pictures of lighthouses, a bed with floral bedding, and wall-mounted lamps.

A lakeside view with a dock, benches, and a row of houses.

A room with a view of a green landscape, a wicker chair, a small table with a vase, and a hanging decoration.

A stone building with a steep staircase leading to a door.

2. Chateau Country Inn

Clayton

Danny

￥16,986

￥18,855 total

includes taxes & fees

Oct 14 - Oct 15

A wooden deck with a railing overlooking a body of water and a distant shoreline.

A two-story house with a balcony on the upper floor, a front door, and a staircase leading to the entrance.

A marina with boats docked at wooden piers, calm water, and a distant shoreline.

A cozy living area with a leather sofa, a dining table with chairs, a leather armchair, and a lamp. A ladder is leaning against the wall, and there is a kitchen area visible in the background.

3. West Winds Motel & Cottages

Clayton

michael

A spacious living room with a wooden ceiling, a fireplace, a television, and a dining area with red chairs and a table.

A clear swimming pool with a metal railing, surrounded by lounge chairs and a fenced area.

A cozy living room with a dark grey sofa, patterned cushions, a wooden coffee table, and a star compass wall decoration.

A wooden deck with a table and striped chairs, surrounded by a white fence and trees.

4. Capt.'s Inn & Suites

Alexandria Bay

Greg

￥11,430

￥12,687 total

includes taxes & fees

Sep 27 - Sep 28

A lobby with a reception desk, a red vending machine, a black leather couch, and a patterned floor.

A vending machine with various snacks and drinks.

A hotel room with a bed, a sofa, a desk, a lamp, a window with curtains, and a bathroom with a sink and mirror.

5. Travel Inn

Watertown

Trina

￥9,767

￥10,840 total

includes taxes & fees

Oct 8 - Oct 9

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A lobby with a reception desk, seating area, and a large potted plant.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

A cozy room with a stone fireplace, two floral armchairs, a small wooden table, and a large window offering a view of the outside.

6. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Lynne

￥9,224

￥10,239 total

includes taxes & fees

Oct 25 - Oct 26

A modern bedroom with a bed, bedside lamp, air conditioning unit, and a mounted TV displaying a streaming service interface.

A Nest Inn sign, a parking area, and a building with a red exterior.

A bathroom with a white sink, a modern faucet, and a blue soap dispenser.

A building with a red exterior and a covered parking area.

7. Nest Inn

Watertown

Harrison

￥8,918

￥10,767 total

includes taxes & fees

Sep 28 - Sep 29

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.

A pair of white front-loading washers in a laundry room with a tiled floor.

8. Days Inn by Wyndham Watertown Fort Drum

Calcium

Robert

￥12,383

￥13,744 total

includes taxes & fees

Oct 4 - Oct 5

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

9. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Yandry

￥15,248

￥16,923 total

includes taxes & fees

Oct 22 - Oct 23

A room with a bed, a chair, a table, and a lamp.

A bathroom with a bathtub, a shower, and a toilet.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A hotel room with a bed, a desk, a chair, and a small table.

10. Allen's Budget Motel

Watertown

Robert

￥9,437

￥10,475 total

includes taxes & fees

Sep 30 - Oct 1

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

A gym with treadmills, elliptical machines, and free weights.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

11. Hampton Inn Watertown

Watertown

Wanda

￥15,491

￥17,196 total

includes taxes & fees

Oct 3 - Oct 4

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A modern building with a covered entrance, multiple windows, and a parking lot.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

A reception area with a marble counter, pendant lighting, and a tiled floor.

12. Quality Inn & Suites Watertown Fort Drum

Calcium

Nicole

￥10,123

￥11,236 total

includes taxes & fees

Oct 25 - Oct 26

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A modern breakfast bar with a coffee machine, cereal, and fruit options.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

An indoor swimming pool with lounge chairs and a clock on the wall.

13. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Bridget

￥17,621

￥19,559 total

includes taxes & fees

Oct 25 - Oct 26

A view of a large body of water with a historic building in the background.

A reception area with a large ship's wheel, a white counter, and a woman standing behind it.

A large stone building with a red roof, surrounded by trees and a body of water.

A room with a sofa, a lamp, and a view of the water.

14. Capt. Thomson's Resort

Alexandria Bay Downtown

Dorothea

￥14,605

￥16,212 total

includes taxes & fees

Oct 15 - Oct 16

A white building with the letters "RL" on the front.

A small white building with a dark front door, two windows with shutters, and a small porch with white Adirondack chairs.

A compact kitchen with a microwave, toaster, and sink. There is a dining table with chairs, a black leather sofa, and a small trash bin.

A hotel room with two single beds, each with a green and white bedspread, a nightstand with a lamp, and a framed picture on the wall.

15. Rock Ledge Motel

Alexandria Bay

Donna

￥12,002

￥13,321 total

includes taxes & fees

Sep 27 - Sep 28

A waterfront property with docked boats, a boathouse, and a large house with a landscaped garden.

A gazebo with a white frame and a dark roof, overlooking a body of water and a distant building.

An indoor swimming pool with multiple lanes, white railings, and hanging pendant lights.

A spacious dining area with a central table, surrounded by brick walls and large windows offering a view of the outdoors.

16. Bonnie Castle Resort & Marina

Alexandria Bay Downtown

karie Anne

￥13,998

￥16,167 total

includes taxes & fees

Oct 23 - Oct 24

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A swimming pool with a changing room, sun loungers, and a hot tub area.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

17. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Melanie

￥20,383

￥22,626 total

includes taxes & fees

Oct 25 - Oct 26

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

A hotel reception area with a white door, a reception desk, and a sign indicating the Royal Inn Office.

A building with a sign reading "ROYAL INN" and a car parked in front.

18. Royal Inn Motel

Watertown

Gary

￥9,712

￥10,780 total

includes taxes & fees

Sep 27 - Sep 28

A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.

A reception desk with a modern design, featuring a wooden finish and a large abstract painting above it.

A gym with various exercise machines, a television, and a green wall.

A hotel room with a bed, a television, a desk, and a window.

19. Spark by Hilton Watertown

Watertown

Alan

￥14,058

￥15,604 total

includes taxes & fees

Oct 3 - Oct 4

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

A spacious lobby with high ceilings, large windows, and modern furniture.

20. Hilton Garden Inn Watertown/Thousand Islands

Watertown

Suzanne

￥19,787

￥21,962 total

includes taxes & fees

Oct 18 - Oct 19

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Clayton attractions

Grass Point State Park

This scenic riverside park offers prime fishing spots and waterfront camping along the St. Lawrence River. Enjoy the sandy beach, marina facilities, and family-friendly atmosphere just steps from your tent.

See properties

1000 Islands River Rat Cheese

9.2/10 (78 reviews)

This beloved local shop crafts award-winning New York State cheddars from mild to 20-year aged varieties. Visit on summer weekends to sample their famous squeaky cheese curds, available fresh or fried.

See properties

The Clayton Opera House

8.4/10 (13 reviews)

This historic 1903 venue showcases diverse performances in an intimate setting for 350 guests. Summer evenings offer the fullest calendar of concerts and theatrical events in the Thousand Islands region.

See properties

Cedar Point State Park

8.4/10 (18 reviews)

Established in 1898, Cedar Point State Park offers a sheltered sandy beach and excellent fishing on the St. Lawrence River. Watch ocean-going freighters from the scenic overlook while enjoying peaceful camping.

See properties

Antique Boat Museum

9.0/10 (72 reviews)

North America's largest freshwater boat collection awaits at this waterfront museum in Clayton. Explore maritime history and tour the opulent 1903 houseboat La Duchesse for an immersive nautical experience.

See properties

Thousand Islands Museum

7.8/10 (17 reviews)

This riverside museum chronicles the Thousand Islands' maritime history through artifacts and the Muskie Hall of Fame. Explore the free research library to discover local river communities' fishing heritage.

See properties

C-Way Golf Course

7.2/10 (9 reviews)

This scenic 18-hole course features challenging water hazards and elevated tees overlooking Clayton countryside. Complete your experience at Natali's Restaurant, enjoying Italian dishes above the 9th green.

See properties

Coyote Moon Vineyards

9.0/10 (37 reviews)

This family-owned Thousand Islands winery has earned over 1,000 awards for its cold-hardy grape varieties. Savor premium tastings at their 20-acre vineyard or join a seasonal wine cruise along the St. Lawrence River.

See properties

Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic downtown and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

See all hotels in Clayton

A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Top Clayton Hotel Reviews

Capt.'s Inn & Suites

10/10 Excellent

"Quiet, convenient location"

1000 Islands Harbor Hotel

10/10 Excellent

"We always enjoy our stay at the Harbor hotel. One of the elevators was out of service so this made it more challenging to reach your destination. Overall the stay was very nice. You can’t beat being at the water’s edge when a big ship passes by!"

Riveredge Resort

10/10 Excellent

"The carpets were "taped" where they needed repairs, looked tacky. Wish we would of have been able to charge to our rooms. Beautiful view ruin but reservations we not correct (2 reservations) which required us to move rooms for the last night."

Chateau Country Inn

8/10 Good

"Loved the Light House Decor! Suggestion: supply plastic water glasses. Thank you!"

West Winds Motel & Cottages

10/10 Excellent

"The motel room was small but clean. No hairdryer but I made do. I was late for check-in but they left me what I needed at the office door."

Bonnie Castle Resort & Marina

10/10 Excellent

"Very nice"

Charming Waterfront House with Detached Cabin

8/10 Good

"the gas grill was not working. lucky for us we brought a charcoal grill and a blackstone grill."

Charming Historic House 4 Blocks from Riverfront in Village of Clayton

8/10 Good

"Nice little house for the three of us. Conveniently located."

K's Motel with Stunning St. Lawrence River Views - Room 8

8/10 Good

"This is a great place to stay in the 1000 Islands, very close to the shops and cafes."

More cheap stays in Clayton

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

￥9,224

￥10,239 total

Oct 25 - Oct 26

includes taxes & fees

Travel Inn

1190 Arsenal St Watertown NY

￥9,767

￥10,840 total

Oct 8 - Oct 9

includes taxes & fees

6.4/10 (83 reviews)

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

￥10,123

￥11,236 total

Oct 25 - Oct 26

includes taxes & fees

Capt.'s Inn & Suites

116 Church Street Alexandria Bay NY

￥11,430

￥12,687 total

Sep 27 - Sep 28

includes taxes & fees

8.8/10 Excellent! (1,008 reviews)

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

￥12,383

￥13,744 total

Oct 4 - Oct 5

includes taxes & fees

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

￥15,248

￥16,923 total

Oct 22 - Oct 23

includes taxes & fees

Frequently asked questions

Where is the best place to stay in Clayton?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and an indoor pool. Other good choices for your visit include West Winds Motel & Cottages and Chateau Country Inn. See all available top hotels, or vacation rentals in Clayton.

What are some of the best vacation rentals in Clayton?

Fishermans Getaway in Clayton & St. Lawrence River: This highly rated vacation home rental in Clayton offers a balcony, a garden, and a barbecue grill to help you feel perfectly comfortable in your new surroundings. It has 7 bedrooms as well as a kitchen with a dishwasher, a fridge, and a stovetop, so you can cook with friends or family. Other favorite homes for rent in Clayton are Waterfront 5 Bedroom Grindstone Island Farmhouse and Charming Waterfront House with Detached Cabin. See all vacation rentals in Clayton.

If I need to cancel my hotel reservation in Clayton, will I receive a refund?

Yes! Most hotel bookings are fully refundable provided that you cancel prior to the hotel's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.

Where can I learn more about changing or cancelling my trip to Clayton?

To access more information about picking new dates or cancelling your trip to Clayton, go to https://www.expedia.com/service/.

What's the best pet-friendly place to stay in Clayton?

West Winds Motel & Cottages is a top pet-friendly option for your stay. See more pet-friendly hotel accommodations in Clayton.

Where is the best hotel to stay near Coyote Moon Vineyards?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data, and this 3.5-star hotel offers a restaurant and an indoor pool. It's located 3.1 mi (5 km) from Coyote Moon Vineyards. Another good choice is The Clipper Inn, located 2.6 mi (4.2 km) away.

What about the best place to stay close to Clayton Island Tours?

One of the top choices for your stay is 1000 Islands Harbor Hotel, located next to Clayton Island Tours, and this 3.5-star hotel offers a restaurant and an indoor pool. Wooden Boat Inn and The Clipper Inn are two other good options within 5 miles.

What's the best hotel for a golf vacation in Clayton?

Wooden Boat Inn is one of the top choices for golfers based on our travel data. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.

What are some accommodations with pools in Clayton?

1000 Islands Harbor Hotel: Hotel, 1-minute walk from Lake Ontario. Features free self parking, an indoor pool, and complimentary wireless internet access. Another option with an onsite pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.

What's the best place to stay near Macdonald-Cartier International Airport (YOW)?

Fairfield Inn & Suites by Marriott Ottawa Airport is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 0.8 mi (1.3 km) from Macdonald-Cartier Intl. Airport. Other choices close to the airport are Hilton Garden Inn Ottawa Airport and Days Inn by Wyndham Ottawa Airport.

What's it like to stay in Clayton?

Visitors to Clayton are sure to enjoy the riverfront. Tourists can also enjoy so much more including its coffeehouses. In Clayton, there are 115 hotels and other accommodations to choose from. Find out more about Clayton.

What should I do while I'm visiting Clayton?

Cultural venues include Thousand Islands Museum, Antique Boat Museum, and The Clayton Opera House. Natural beauty is on display at Lake Ontario, Grenell Island, and Blind Bay. A couple of additional sights to add to your agenda are 1000 Islands River Rat Cheese and Clayton Marina. Check out what more to see and do in Expedia's Clayton guide.

What's the weather like in Clayton?

The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 26°F. The snowiest months in Clayton are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

Explore a world of travel with Expedia

Mexico Vacation Rentals

Book Hotels in Clayton on Expedia.com

Find hotels in Clayton, NY from ￥10,239

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Clayton

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Clayton hotels

1. 1000 Islands Harbor Hotel

2. Chateau Country Inn

3. West Winds Motel & Cottages

4. Capt.'s Inn & Suites

5. Travel Inn

6. Ramada by Wyndham Watertown/Thousand Islands NY

7. Nest Inn

8. Days Inn by Wyndham Watertown Fort Drum

9. Comfort Inn & Suites Watertown - 1000 Islands

10. Allen's Budget Motel

11. Hampton Inn Watertown

12. Quality Inn & Suites Watertown Fort Drum

13. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

14. Capt. Thomson's Resort

15. Rock Ledge Motel

16. Bonnie Castle Resort & Marina

17. Fairfield Inn & Suites Watertown Thousand Islands

18. Royal Inn Motel

19. Spark by Hilton Watertown

20. Hilton Garden Inn Watertown/Thousand Islands

Stay near popular Clayton attractions

Grass Point State Park

1000 Islands River Rat Cheese

The Clayton Opera House

Cedar Point State Park

Antique Boat Museum

Thousand Islands Museum

C-Way Golf Course

Coyote Moon Vineyards

Learn more about Clayton

Top Clayton Hotel Reviews

Capt.'s Inn & Suites

1000 Islands Harbor Hotel

Riveredge Resort

Chateau Country Inn

West Winds Motel & Cottages

Bonnie Castle Resort & Marina

Charming Waterfront House with Detached Cabin

Charming Historic House 4 Blocks from Riverfront in Village of Clayton

K's Motel with Stunning St. Lawrence River Views - Room 8

More cheap stays in Clayton

Ramada by Wyndham Watertown/Thousand Islands NY

Travel Inn

Quality Inn & Suites Watertown Fort Drum

Capt.'s Inn & Suites

Days Inn by Wyndham Watertown Fort Drum

Comfort Inn & Suites Watertown - 1000 Islands

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app