Top 10 Hotels in Clayton, NY from ￥10,507 - Competitive Prices

Clayton, NY, USA - 02-09-2025: Winter aerial image Clayton, NY along a frozen St Lawrence River

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Our top choices for Clayton hotels

1. 1000 Islands Harbor Hotel

Clayton

John

￥36,127

￥40,101 total

includes taxes & fees

Aug 31 - Sep 1

Standard Room, 1 King Bed | Premium bedding, WiFi (free), bed sheets

2. Chateau Country Inn

Clayton

Christina

￥19,479

￥21,621 total

includes taxes & fees

Aug 17 - Aug 18

2-BR Riverfront (Top Floor) | Desk, WiFi (free), individually decorated, individually furnished

Desk, WiFi (free), individually decorated, individually furnished

3. West Winds Motel & Cottages

Clayton

michael

￥18,884

￥20,962 total

includes taxes & fees

Sep 7 - Sep 8

1 King & 1 Full Bed with Kitchenette and Deck | Living area | 32-inch flat-screen TV with cable channels, TV

4. Capt.'s Inn & Suites

Alexandria Bay

Beth

￥11,359

￥12,608 total

includes taxes & fees

Sep 7 - Sep 8

Studio Suite, 1 King Bed, Non Smoking | Desk, iron/ironing board, WiFi (free), alarm clocks

5. Days Inn by Wyndham Watertown Fort Drum

Calcium

William

￥14,482

￥16,074 total

includes taxes & fees

Aug 23 - Aug 24

Room, 1 Queen Bed | Premium bedding, WiFi (free), bed sheets

Room, 2 Double Beds | Premium bedding, WiFi (free), bed sheets

6. Allen's Budget Motel

Watertown

James

￥9,466

￥10,507 total

includes taxes & fees

Aug 16 - Aug 17

One King Bed, Non-Smoking, with Jetted Tub | Hypo-allergenic bedding available, iron/ironing board, WiFi (free)

7. Hampton Inn Watertown

Watertown

Bukola

￥18,537

￥20,575 total

includes taxes & fees

Aug 23 - Aug 24

Desk, iron/ironing board, cribs (free), WiFi (free)

8. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Stephany

￥12,724

￥14,125 total

includes taxes & fees

Sep 11 - Sep 12

Deluxe Studio Suite, Non Smoking | Desk, laptop workspace, blackout drapes, iron/ironing board

9. Travel Inn

Watertown

Natalie

￥9,796

￥10,874 total

includes taxes & fees

Sep 1 - Sep 2

Standard Room, 1 Queen Bed, Non Smoking | Premium bedding, desk, iron/ironing board, WiFi (free)

10. Quality Inn & Suites Watertown Fort Drum

Calcium

Paul

￥12,805

￥14,214 total

includes taxes & fees

Sep 11 - Sep 12

Standard Room, 1 King Bed, Jetted Tub | In-room safe, desk, iron/ironing board, cribs (free)

11. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

john

￥21,340

￥23,686 total

includes taxes & fees

Sep 11 - Sep 12

Premium bedding, pillowtop beds, desk, blackout drapes

12. Spark by Hilton Watertown

Watertown

sheila

￥17,981

￥19,959 total

includes taxes & fees

Aug 17 - Aug 18

13. Rock Ledge Motel

Alexandria Bay

James

￥12,039

￥13,362 total

includes taxes & fees

Sep 7 - Sep 8

14. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Cliff

￥20,921

￥23,220 total

includes taxes & fees

Aug 23 - Aug 24

15. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Adora

￥19,161

￥21,270 total

includes taxes & fees

Sep 11 - Sep 12

Room, 2 Double Beds, Smoking | Desk, soundproofing, WiFi (free), bed sheets

16. Royal Inn Motel

Watertown

Gary

￥10,491

￥11,646 total

includes taxes & fees

Aug 12 - Aug 13

17. Hilton Garden Inn Watertown/Thousand Islands

Watertown

￥21,635

￥24,014 total

includes taxes & fees

Aug 23 - Aug 24

Honeymoon Room | Blackout drapes, soundproofing, iron/ironing board (on request)

18. Otter Creek Inn

Alexandria Bay Downtown

Megan

￥16,565

￥18,387 total

includes taxes & fees

Sep 8 - Sep 9

King Riverfront Corner Castleview in Main Channel | Premium bedding, down comforters, pillowtop beds, blackout drapes

Two Bedroom Efficiency Riverfront Castleview in Main Channel, Second Floor | View from room

19. Capt. Thomson's Resort

Alexandria Bay Downtown

Harry

￥27,292

￥30,294 total

includes taxes & fees

Sep 7 - Sep 8

Studio Suite, 2 Queen Beds | Premium bedding, desk, laptop workspace, blackout drapes

20. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Vanessa

￥16,407

￥18,212 total

includes taxes & fees

Sep 9 - Sep 10

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Stay near popular Clayton attractions

Grass Point State Park

This scenic riverside park offers prime fishing spots and waterfront camping along the St. Lawrence River. Enjoy the sandy beach, marina facilities, and family-friendly atmosphere just steps from your tent.

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1000 Islands River Rat Cheese

9.2/10 (78 reviews)

This beloved local shop crafts award-winning New York State cheddars from mild to 20-year aged varieties. Visit on summer weekends to sample their famous squeaky cheese curds, available fresh or fried.

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Antique Boat Museum

9.0/10 (72 reviews)

North America's largest freshwater boat collection awaits at this waterfront museum in Clayton. Explore maritime history and tour the opulent 1903 houseboat La Duchesse for an immersive nautical experience.

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Thousand Islands Museum

7.8/10 (17 reviews)

This riverside museum chronicles the Thousand Islands' maritime history through artifacts and the Muskie Hall of Fame. Explore the free research library to discover local river communities' fishing heritage.

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The Clayton Opera House

8.4/10 (13 reviews)

This historic 1903 venue showcases diverse performances in an intimate setting for 350 guests. Summer evenings offer the fullest calendar of concerts and theatrical events in the Thousand Islands region.

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Cedar Point State Park

8.4/10 (18 reviews)

Established in 1898, Cedar Point State Park offers a sheltered sandy beach and excellent fishing on the St. Lawrence River. Watch ocean-going freighters from the scenic overlook while enjoying peaceful camping.

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Coyote Moon Vineyards

9.0/10 (37 reviews)

This family-owned Thousand Islands winery has earned over 1,000 awards for its cold-hardy grape varieties. Savor premium tastings at their 20-acre vineyard or join a seasonal wine cruise along the St. Lawrence River.

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C-Way Golf Course

7.2/10 (9 reviews)

This scenic 18-hole course features challenging water hazards and elevated tees overlooking Clayton countryside. Complete your experience at Natali's Restaurant, enjoying Italian dishes above the 9th green.

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Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic downtown and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

See all hotels in Clayton

A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Top Clayton Hotel Reviews

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Excellent

"X̌"

1000 Islands Harbor Hotel

10/10 Excellent

"This is just a lovely hotel .... the room spotless & well appointed & a great restaurant ... food excellent & the setting is just perfect ! "

K's Motel with Stunning St. Lawrence River Views - Room 8

8/10 Good

"The room was a decent size, the bed was extremely comfortable as were the pillows. A bit disappointed that our room(#8) didn’t have any outdoor seating the other rooms were occupied. It would have felt more welcoming if we were able to sit and engage others without being intrusive."

Riveredge Resort

8/10 Good

"The area is very nice and the hotel is in walking distance of shops, docks, bars/restaurants, so the location is great, but it is very old and dated."

West Winds Motel & Cottages

10/10 Excellent

"Beautiful setting, clean, friendly staff and reasonable price"

Quality Inn & Suites Watertown Fort Drum

10/10 Excellent

"Friendly staff, clean, modern and comfortable hotel. Thank you!"

Capt.'s Inn & Suites

10/10 Excellent

"Always great. We stay theee all the time!"

Ramada by Wyndham Watertown/Thousand Islands NY

8/10 Good

"Good breakfast."

Waterfront 5 Bedroom Grindstone Island Farmhouse

10/10 Excellent

"The Brown Family Farmhouse was a wonderful island experience. The historic home was super clean and nicely decorated. The country kitchen had everything you could need. Our family enjoyed walking and biking the dirt roads with the cows nearby. Swimming from the deep water dock was fun too. Easy access by boat to Clayton."

More cheap stays in Clayton

Capt.'s Inn & Suites

116 Church Street Alexandria Bay NY

￥11,359

￥12,608 total

Sep 7 - Sep 8

includes taxes & fees

8.8/10 Excellent! (1,006 reviews)

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

￥12,724

￥14,125 total

Sep 11 - Sep 12

includes taxes & fees

8/10 Very Good! (1,104 reviews)

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

￥12,805

￥14,214 total

Sep 11 - Sep 12

includes taxes & fees

8.2/10 Very Good! (1,005 reviews)

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

￥14,482

￥16,074 total

Aug 23 - Aug 24

includes taxes & fees

8.8/10 Excellent! (1,020 reviews)

Spark by Hilton Watertown

300 Washington Street Watertown NY

￥17,981

￥19,959 total

Aug 17 - Aug 18

includes taxes & fees

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

￥19,161

￥21,270 total

Sep 11 - Sep 12

includes taxes & fees

8.6/10 Excellent! (1,022 reviews)

Frequently asked questions

Where is the best place to stay in Clayton?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and an indoor pool. Other good choices for your visit include West Winds Motel & Cottages and Chateau Country Inn. See all available top hotels, or vacation rentals in Clayton.

What are some of the best vacation rentals in Clayton?

Waterfront 5 Bedroom Grindstone Island Farmhouse: This highly rated vacation home rental in Clayton is located on a river and has a patio, a garden, and a barbecue grill to put you at ease in your new surroundings. It has 5 bedrooms as well as a kitchen with a dishwasher, a fridge, and a stovetop, so you can cook with friends or family. Make the most of the selection of games in this rental home to help you unwind. Our travelers also rate Fishermans Getaway in Clayton & St. Lawrence River as a favorite home for rent in Clayton. See all vacation rentals in Clayton.

If I need to cancel my hotel reservation in Clayton, will I receive a refund?

Yes! Most hotel bookings are fully refundable provided that you cancel prior to the hotel's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.

Where can I learn more about changing or cancelling my trip to Clayton?

To access more information about picking new dates or cancelling your trip to Clayton, go to https://www.expedia.com/service/.

What's the best pet-friendly place to stay in Clayton?

West Winds Motel & Cottages is a top pet-friendly option for your stay. See more pet-friendly hotel accommodations in Clayton.

Where is the best hotel to stay near Coyote Moon Vineyards?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data, and this 3.5-star hotel offers a restaurant and an indoor pool. It's located 3.1 mi (5 km) from Coyote Moon Vineyards. Another good choice is The Clipper Inn, located 2.6 mi (4.2 km) away.

What about the best place to stay close to Clayton Island Tours?

One of the top choices for your stay is 1000 Islands Harbor Hotel, located next to Clayton Island Tours, and this 3.5-star hotel offers a restaurant and an indoor pool. Wooden Boat Inn and The Clipper Inn are two other good options within 5 miles.

What's the best hotel for a golf vacation in Clayton?

Wooden Boat Inn is one of the top choices for golfers based on our travel data. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.

What are some accommodations with pools in Clayton?

1000 Islands Harbor Hotel: Hotel, 1-minute walk from Lake Ontario. Features free self parking, an indoor pool, and complimentary wireless internet access. Another option with an onsite pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.

What's the best place to stay near Macdonald-Cartier International Airport (YOW)?

Fairfield Inn & Suites by Marriott Ottawa Airport is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 0.8 mi (1.3 km) from Macdonald-Cartier Intl. Airport. Other choices close to the airport are Hilton Garden Inn Ottawa Airport and Days Inn by Wyndham Ottawa Airport.

What's it like to stay in Clayton?

Visitors to Clayton are sure to enjoy the riverfront. Tourists can also enjoy so much more including its coffeehouses. A top sight in the area is Kingston Waterfront. In Clayton, there are 117 hotels and other accommodations to choose from. Find out more about Clayton.

What should I do while I'm visiting Clayton?

Cultural venues include Thousand Islands Museum, Antique Boat Museum, and The Clayton Opera House. Natural beauty is on display at Lake Ontario, Grenell Island, and Blind Bay. Additionally, you'll find Kingston Waterfront in the area. Check out what more to see and do in Expedia's Clayton guide.

What's the weather like in Clayton?

The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 26°F. The snowiest months in Clayton are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

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Find hotels in Clayton, NY from ￥10,507

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Clayton

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Clayton hotels

1. 1000 Islands Harbor Hotel

2. Chateau Country Inn

3. West Winds Motel & Cottages

4. Capt.'s Inn & Suites

5. Days Inn by Wyndham Watertown Fort Drum

6. Allen's Budget Motel

7. Hampton Inn Watertown

8. Ramada by Wyndham Watertown/Thousand Islands NY

9. Travel Inn

10. Quality Inn & Suites Watertown Fort Drum

11. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

12. Spark by Hilton Watertown

13. Rock Ledge Motel

14. Fairfield Inn & Suites Watertown Thousand Islands

15. Comfort Inn & Suites Watertown - 1000 Islands

16. Royal Inn Motel

17. Hilton Garden Inn Watertown/Thousand Islands

18. Otter Creek Inn

19. Capt. Thomson's Resort

20. Candlewood Suites Watertown Fort Drum by IHG

Stay near popular Clayton attractions

Grass Point State Park

1000 Islands River Rat Cheese

Antique Boat Museum

Thousand Islands Museum

The Clayton Opera House

Cedar Point State Park

Coyote Moon Vineyards

C-Way Golf Course

Learn more about Clayton

Top Clayton Hotel Reviews

Comfort Inn & Suites Watertown - 1000 Islands

1000 Islands Harbor Hotel

K's Motel with Stunning St. Lawrence River Views - Room 8

Riveredge Resort

West Winds Motel & Cottages

Quality Inn & Suites Watertown Fort Drum

Capt.'s Inn & Suites

Ramada by Wyndham Watertown/Thousand Islands NY

Waterfront 5 Bedroom Grindstone Island Farmhouse

More cheap stays in Clayton

Capt.'s Inn & Suites

Ramada by Wyndham Watertown/Thousand Islands NY

Quality Inn & Suites Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

Spark by Hilton Watertown

Comfort Inn & Suites Watertown - 1000 Islands

Frequently asked questions

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