
San Juan Islands Honeymoon Vacations
Book a Honeymoon Hotel + Flight or Car together to unlock savings
- Plan, book, travel with confidence
Better together
Save up to ¥45,448 when you book a flight and hotel together*
Find the right fit
With over 300,000 hotels worldwide, it's easy to create a perfect package
Rest easy
Plan, book, and manage your trip all in one place
Top Honeymoon San Juan Islands Hotels

Earthbox Inn & Spa
410 Spring Street, Friday Harbor, WA
Stay at this 3-star spa hotel in Friday Harbor. Enjoy free WiFi, free parking, and a full-service spa. Our guests praise the helpful staff and the clean rooms ...
8.6/10 Excellent! (983 reviews)
Quite, family-friendly home away from home.
"The hotel was in a very convenient location. Perfect for your fur babies to take on a walk. The room was clean and well equipped to host our 1 year old and 2 dogs. We had a lovely time. The hotel manager had excellent suggestions to explore on the island. Will definitely will stay with them next ..."
Reviewed on Sep 22, 2025

Deer Harbor Inn
33 Inn Lane, Deer Harbor, WA
Stay at this 3-star hotel in Deer Harbor. Enjoy free WiFi, free parking, and a garden. Popular attractions Skull Island State Park and West Sound Marina are ...
8.2/10 Very Good! (190 reviews)
"Stayed at a lodge room overnight. Excellent value for money. Our room and bathroom were clean. Check in was very easy. The bed was very comfortable; it was so comfy that it heavily influenced our decision to sleep in rather than get back on the road early morning. I would definitely stay again!"
Reviewed on Sep 7, 2025

Roche Harbor Resort
248 Reuben Memorial Dr, Friday Harbor, WA
Stay at this 3-star spa resort in Friday Harbor. Enjoy an outdoor pool, a full-service spa, and 3 restaurants. Popular attractions Roche Harbor Marina and San ...
9/10 Wonderful! (397 reviews)
"We loved our stay. Adorable location."
Reviewed on Sep 18, 2025
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.