San Juan Island Vacations from ￥146,860

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The Latest San Juan Island Vacation Packages

Price found within the past 48 hours. Click for updated prices.
Sleep Inn - SeaTac Airport

Sleep Inn - SeaTac Airport

2.5 out of 5
Madrona
Price was ￥191,874, price is now ￥146,860 per person
￥146,860
per person
Mar 14 - Mar 21
found 1 day ago
Roundtrip non-stop flight included
Tokyo (NRT) to Seattle (SEA)
8.4/10 Very Good! (2,134 reviews)
They only make room by request not everyday and one day i asked for toilet paper and they didn’t have toilet paper … The breakfast is the same thing everyday and nothing healthy. I booked a queen size bed room and they have me one with 2 beds and in front of the laundry room it was super noisy and the employees working there super loud they have cero considertion for costumer in those first floor rooms…

Reviewed on Jan 2, 2026

Mediterranean Inn

Mediterranean Inn

3 out of 5
Downtown Seattle
Price was ￥262,430, price is now ￥192,369 per person
￥192,369
per person
Mar 14 - Mar 21
found 1 day ago
Roundtrip non-stop flight included
Tokyo (NRT) to Seattle (SEA)
9.4/10 Exceptional! (5,547 reviews)
Room was available 30m early. $40 for parking overnight with tiny little spaces barely big enough to open the door of your car which isn’t great but garage is secure and they even let you park early if you want to roam around the city a bit so long as you check in the front. Close walking distance to lovely restaurants incredible rooms and very clean.

Reviewed on Jan 10, 2026

Fairmont Olympic Hotel

Fairmont Olympic Hotel

5 out of 5
Downtown Seattle
Price was ￥307,602, price is now ￥226,168 per person
￥226,168
per person
Mar 14 - Mar 21
found 1 day ago
Roundtrip non-stop flight included
Tokyo (NRT) to Seattle (SEA)
9.2/10 Wonderful! (1,410 reviews)
Wonderful experience all around.

Reviewed on Jan 11, 2026

The Belltown Inn

The Belltown Inn

2.5 out of 5
Downtown Seattle
Price was ￥230,370, price is now ￥175,408 per person
￥175,408
per person
Mar 14 - Mar 21
found 1 day ago
Roundtrip non-stop flight included
Tokyo (NRT) to Seattle (SEA)
9.2/10 Wonderful! (4,267 reviews)
The staff here are so kind and I had great conversations with them. I highly recommend this place even though 3rd street can be a little sketchy, but the staff reassured me that they do no harm. Belltown Inn is a 10 minute walk to Pike Place, Space Needle, and the 1 line which takes you to pretty much any place you want to go. My room was very quiet, clean, and spacious (for one person). ALSO super affordable!!

Reviewed on Jan 10, 2026

Lotte Hotel Seattle

Lotte Hotel Seattle

5 out of 5
Downtown Seattle
Price was ￥262,366, price is now ￥203,710 per person
￥203,710
per person
Mar 3 - Mar 8
found 1 day ago
Roundtrip flight included
Tokyo (TYO) to Seattle (SEA)
9.4/10 Exceptional! (1,000 reviews)
staff was so kind, all rooms were super neat and tidy. perfect stay 10/10!

Reviewed on Jan 10, 2026

Find the Best San Juan Island Vacation Packages

San Juan Island Hotel Deals

Inn to the Woods B&B

Inn to the Woods B&B

3.5 out of 5
46 Elena Drive Friday Harbor WA
9.6/10 Exceptional! (88 reviews)
Overall a lovely property, stay was very relaxing in a beautiful setting. Innkeepers Nancy and Patrick were wonderful!

Reviewed on Jan 2, 2026

Get rates
Inn to the Woods B&B
Friday Harbor House

Friday Harbor House

3.5 out of 5
130 West Street Friday Harbor WA
The price is ￥30,915 per night from Jan 18 to Jan 19
￥30,915
￥34,208 total
Jan 18 - Jan 19
includes taxes & fees
9.4/10 Exceptional! (248 reviews)
Everything was great

Reviewed on Jan 7, 2026

Friday Harbor House
Snug Harbor Resort

Snug Harbor Resort

2.5 out of 5
1997 Mitchell Bay Rd Friday Harbor WA
The price is ￥35,795 per night from Jan 13 to Jan 14
￥35,795
￥39,499 total
Jan 13 - Jan 14
includes taxes & fees
9.8/10 Exceptional! (441 reviews)
The room was great!

Reviewed on Jan 5, 2026

Snug Harbor Resort
See all 884 properties in San Juan Island
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Discover the most popular places to visit in San Juan Island

Lime Kiln Point State Park showing a house and forests

Lime Kiln Point State Park

5/5(16 reviews)

Also known as Whale Watch Park, this diving site is one of the best places in the world to view wild orca pods from the shore.

Lime Kiln Point State Park

San Juan Islands Museum of Art

3/5(1 review)

You can spend an afternoon exploring the galleries in San Juan Islands Museum of Art during your travels in Friday Harbor. While you're in the area, stroll along the waterfront.

San Juan Islands Museum of Art

What to do in San Juan Island

Amazing Sunsets top of giant trees!

Sunset Canopy Climb on Lopez Island

￥31,157
per adult
Sunset Canopy Climb on Lopez Island
The Orcas Project Wine Tasting

The Orcas Project Wine Tasting

￥4,497
per adult
100% of travellers recommend
The Orcas Project Wine Tasting
Private Winery, Distillery, and Brewery Tour by Luxury Vehicle

Victoria Boutique Winery Tour

￥37,791
per adult
Victoria Boutique Winery Tour
See all activities in San Juan Island

Frequently asked questions

Can I cancel my flight booking to San Juan Island due to COVID-19?
If you haven't booked yet, scan the terms and conditions of the airfare you're considering. If you've already locked in your flight to San Juan Island, click through to our Customer Service Portal. The information here will help determine which COVID-19 policies are applicable to your reservation and guide you with the next steps.
What's the best way to find cheap flights to San Juan Island that have flexible change policies?
At Expedia, we've been channeling our inner yoga master to provide you with the most flexible airfares in town. Simply click on "No change fee" directly beneath the "Flexible change policies" subheading to find your perfect flight to San Juan Island.
What are some of the general tips for travelers to San Juan Island during the COVID-19 outbreak?
With the continuation of the COVID-19 outbreak, traveling now comes with a few extra challenges. Make a note of these valuable tips before jumping on your plane to San Juan Island:
  • Before you book a flight, find out if any travel restrictions apply — in both your destination and origin. Get up-to-date information by reviewing government websites.
  • Wear a face mask during airport screening. A TSA employee will require you to lower your mask temporarily for identification purposes.
  • Instead of handing a TSA officer your boarding pass, place it directly on the reader yourself. When that's done, hold it up for inspection.
  • You can take one container of hand sanitizer up to 12 oz (350 ml) in your carry-on baggage. You'll need to remove it for screening.
  • Put any personal items (e.g, keys, phone and coins) in your carry-on instead of a bin to minimize handling during the screening process.
  • Separate any food you're carrying for X-ray scanning. Food items often set off the alarm. Placing them in a clear plastic bag and into a bin reduces the need for a TSA officer to handle and inspect your belongings.

Which airlines fly to San Juan Island?
Let Alaska Airlines get you there. This popular carrier operates 9722 flights a month to Seattle - Tacoma Intl. Airport (SEA), a San Juan Island gateway.
How can I find cheap tickets to San Juan Island?
A helpful strategy for scoring cheap fares is to be flexible with your travel dates. Begin with searching for your flight to San Juan Island, then click on the "flexible dates" link for a list of prices for nearby days. Another good tip? Book in advance. For an idea of fares, was the best price for a flight to San Juan Island in the last seven days.
How much is a flight to San Juan Island?
You could have scored a return air ticket to San Juan Island from anywhere between and in the last seven days. For one-way trips leaving from (), the lowest amount paid during this period was just .
What are the most popular airports to fly into in San Juan Island?
Pack your suitcase and fly into Seattle - Tacoma Intl. Airport (SEA), San Juan Island's main flight hub. Book a fare on one of the 17599 flights that touch down here every month.
When is the cheapest time to fly to San Juan Island?
If you'd prefer to spend your money exploring San Juan Island rather than on getting there, jet off early in the week. The cheapest day to fly is generally Tuesday, with Monday close behind. With many folks keeping their travel to weekends, Saturday often has the costliest airfares.
How much is a plane ticket to San Juan Island?
In the last seven days, plane fares to San Juan Island cost between and . The early bird catches the worm, so land yourself a great deal today.
Which airlines with flights to San Juan Island employ COVID-19 cleanliness policies?
As people begin traveling once again, the majority of airlines have introduced physical distancing and other preventive measures to reduce the spread of COVID-19. Here are just some of them:
  • Alaska Airlines - this airline is known for providing passenger masks and cleaning with disinfectant.
  • Delta - this airline is known for electrostatic cleaning and cleaning with disinfectant.
  • Southwest Airlines - this airline is known for providing passenger masks and cleaning with disinfectant.

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* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.