Find Boutique Hotels in San Juan Island, WA

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Check availability on San Juan Island Boutique Hotels

Tonight
Dec 5 - Dec 6
Tomorrow
Dec 6 - Dec 7
This weekend
Dec 5 - Dec 7
Next weekend
Dec 12 - Dec 14

Top San Juan Island Boutique Hotels

No exact matches found, but these alternatives could be just right

Recommended hotels in San Juan Island

Front of property
Snug Harbor Resort

Snug Harbor Resort

2.5 star property
Friday Harbor
9.8 out of 10, Exceptional, (431)
"Perfect and romantic place!!!"
United States
Sorangel
The price is ￥31,962
￥35,270 total
includes taxes & fees
Dec 10 - Dec 11
Snug Harbor Resort
Front of property
Tucker House Inn

Tucker House Inn

4.0 star property
Friday Harbor
9.4 out of 10, Exceptional, (280)
"Room was great - check-in by email was easy."
Canada
Peter
The price is ￥24,416
￥27,015 total
includes taxes & fees
Dec 14 - Dec 15
Tucker House Inn
Front of property
Friday Harbor Suites

Friday Harbor Suites

2.5 star property
Friday Harbor
8.4 out of 10, Very Good, (1000)
"Great room, great staff, love the hotel. This will be our go to for visits here! "
United States
Nathaniel
The price is ￥28,443
￥31,472 total
includes taxes & fees
Dec 14 - Dec 15
Friday Harbor Suites
King Suite w/View - Quarryman Hall
Roche Harbor Resort

Roche Harbor Resort

3.0 star property
Friday Harbor
9.2 out of 10, Wonderful, (415)
"Nice clean and comfy rooms. Staff was really friendly and helpful. "
United States
David
Roche Harbor Resort
Front of property
Earthbox Inn & Spa

Earthbox Inn & Spa

3.0 star property
Friday Harbor
8.8 out of 10, Excellent, (997)
"Earthbox is an awesome hotel. Location is perfect and so convenient for shopping and dining. Beautiful rooms and lovely pool. Staff are top notch!"
United States
Crystal
The price is ￥31,802
￥35,190 total
includes taxes & fees
Dec 31 - Jan 1, 2026
Earthbox Inn & Spa
Hypo-allergenic bedding, down comforters, in-room safe, desk
Friday Harbor House

Friday Harbor House

3.5 star property
Friday Harbor
9.6 out of 10, Exceptional, (239)
"Great getaway or business trip spot to stay in near the ferry terminal and downtown shops "
United States
Robert
The price is ￥33,619
￥37,200 total
includes taxes & fees
Dec 14 - Dec 15
Friday Harbor House
Property grounds
Bird Rock Hotel

Bird Rock Hotel

2.0 star property
Friday Harbor
8.8 out of 10, Excellent, (362)
"Having stayed at Bird Rock and Earthbox I'd choose Earthbox for my next visit to Friday Harbor. Both properties are well decorated and maintained but, despite Bird Rock's convenience, for those who are walking from the ferry, Earthbox has the advantage of being a quiet location who's rooms ( or at least my room ) have sleeping areas that are not flooded with light ( during typical sleeping hours). The staff are very helpful and welcoming."
United States
Tara
The price is ￥28,535
￥31,573 total
includes taxes & fees
Dec 14 - Dec 15
Bird Rock Hotel
TV, fireplace, DVD player, video library
Snug Harbor Resort and Marina - One Bedroom Waterfront Suite

Snug Harbor Resort and Marina - One Bedroom Waterfront Suite

Friday Harbor
10.0 out of 10, Exceptional, (3)
"We had a great one-night stay at the resort. The coffee in the shop is delicious!"
United States
Zaida R.
The price is ￥38,615
￥47,360 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Snug Harbor Resort and Marina - One Bedroom Waterfront Suite
Fridge, microwave, oven, stovetop
Snug Harbor Resort and Marina - One Bedroom Waterfront Cabin

Snug Harbor Resort and Marina - One Bedroom Waterfront Cabin

Friday Harbor
9.6 out of 10, Exceptional, (8)
"We booked last minute and are so lucky there was an opening! This is such a serene spot and the staff goes out of their way to make your stay the best it can be. We rented the e-bikes and toured the island. Highly recommend!Thank you everyone!"
United States
Sarah W.
The price is ￥35,513
￥44,394 total
includes taxes & fees
Dec 6 - Dec 7
Snug Harbor Resort and Marina - One Bedroom Waterfront Cabin
Flat-screen TV, fireplace, DVD player, video library
Snug Harbor Resort and Marina - Two Bedroom Water View Cabin, King Beds

Snug Harbor Resort and Marina - Two Bedroom Water View Cabin, King Beds

Friday Harbor
10.0 out of 10, Exceptional, (5)
"The cabins at Snug Harbor more than exceeded our expectations! We really enjoyed our stay and are looking to coming back in summer!"
United States
mary c.
The price is ￥61,877
￥77,275 total
includes taxes & fees
Jan 5 - Jan 6, 2026
Snug Harbor Resort and Marina - Two Bedroom Water View Cabin, King Beds
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top San Juan Island Hotel Reviews

Bird Rock Hotel

Bird Rock Hotel

10/10 Excellent
"Beautiful. If you need extra items the lobby has it for you. They have their own products which are great!!!"
Eileen 2-night trip
Posted 2 months ago
Bird Rock Hotel

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