Find Boutique Hotels in San Juan Island, WA

    calendar shield illustration

    Change your mind

    Book hotels with free cancellation
    deals illustration

    Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
    bed illustration

    Be picky

    Search almost a million properties worldwide

Check availability on San Juan Island Boutique Hotels

Tonight
Aug 31 - Sep 1
Tomorrow
Sep 1 - Sep 2
Next weekend
Sep 5 - Sep 7
In two weeks
Sep 12 - Sep 14

Top San Juan Island Boutique Hotels

We don't have any properties that match your exact search

Recommended hotels in San Juan Island

Anacortes Ship Harbor Inn
Exterior

Anacortes Ship Harbor Inn

3.0 star property
9.0 out of 10, Wonderful, (1016)
"Conveniently located to ferry and town "
The price is ￥14,426
￥15,985 total
includes taxes & fees
Sep 29 - Sep 30
Anacortes Ship Harbor Inn
The Marina Inn
Standard Room, 2 Queen Beds | 1 bedroom, hypo-allergenic bedding, iron/ironing board

The Marina Inn

2.5 star property
9.4 out of 10, Exceptional, (1008)
"Love this place!"
The price is ￥18,381
￥20,662 total
includes taxes & fees
Sep 1 - Sep 2
The Marina Inn
Trumpeter Inn
Exterior

Trumpeter Inn

3.0 star property
10.0 out of 10, Exceptional, (233)
"The property is stunning, and the hosts were exceptional. We thoroughly enjoyed exploring the farm, and the breakfast was especially delightful."
The price is ￥23,484
￥25,913 total
includes taxes & fees
Oct 1 - Oct 2
Trumpeter Inn
Roche Harbor Resort
King Suite w/View - Quarryman Hall

Roche Harbor Resort

3.0 star property
9.2 out of 10, Wonderful, (393)
"Fantastic stay!"
Roche Harbor Resort
Anacortes Inn
Superior Double Room | Premium bedding, desk, laptop workspace, iron/ironing board

Anacortes Inn

2.0 star property
8.8 out of 10, Excellent, (360)
"The beds were super comfy!!"
The price is ￥18,969
￥21,311 total
includes taxes & fees
Oct 1 - Oct 2
Anacortes Inn
Friday Harbor Suites
Front of property

Friday Harbor Suites

2.5 star property
8.4 out of 10, Very Good, (1006)
"Great place to stay. "
The price is ￥30,035
￥33,235 total
includes taxes & fees
Sep 21 - Sep 22
Friday Harbor Suites
Snug Harbor Resort
Front of property

Snug Harbor Resort

2.5 star property
9.8 out of 10, Exceptional, (405)
"Loved our stay here!"
The price is ￥39,571
￥43,666 total
includes taxes & fees
Oct 1 - Oct 2
Snug Harbor Resort
Tucker House Inn
Front of property

Tucker House Inn

4.0 star property
9.4 out of 10, Exceptional, (269)
"Beautiful and quiet destination."
The price is ￥30,178
￥33,393 total
includes taxes & fees
Oct 1 - Oct 2
Tucker House Inn
The Orca Inn
Exterior

The Orca Inn

2.0 star property
7.8 out of 10, Good, (1009)
"Had a very nice stay. "
The price is ￥12,631
￥13,976 total
includes taxes & fees
Oct 1 - Oct 2
The Orca Inn
Saturn's Return
Deluxe Room, 1 King Bed | 1 bedroom, premium bedding, free WiFi, bed sheets

Saturn's Return

2.0 star property
9.6 out of 10, Exceptional, (22)
"Very quiet and peaceful place. Emma was very nice and we really enjoyed the farm."
The price is ￥32,875
￥36,278 total
includes taxes & fees
Sep 21 - Sep 22
Saturn's Return
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top San Juan Island Hotel Reviews

Explore a world of travel with Expedia

Explore a world of travel with Expedia