A lakeside lodge with a wooden pier, surrounded by lush greenery and a forested backdrop.

Find hotels in San Juan Island, WA from ￥15,339

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Sep 26 - Sep 27
Tomorrow
Sep 27 - Sep 28
Next weekend
Oct 2 - Oct 4
In two weeks
Oct 9 - Oct 11

Filter by

Property class

Guest rating

Our top choices for San Juan Island hotels

A motel with a row of rooms, a parking lot, and blooming flowers in the foreground.
A room with two beds, wooden walls, and a window.
A wooden chair and a wooden dresser in a room with a wooden panel wall.
A bathroom with a shower, a towel rack, and a shelf with a towel.

1. The Orca Inn

The Orca Inn
Friday Harbor
United States
Andrew
￥14,370
￥15,901 total
includes taxes & fees
Oct 20 - Oct 21
The Orca Inn
A building with a covered outdoor area, red doors, and hanging flower baskets.
A hotel room with a grey armchair, a small round table, a bedside table, a lamp, and a potted plant.
A hotel room with two beds, a nightstand with a lamp, a vase with flowers, and a window with curtains.
A pool area with a wooden deck, surrounded by trees with pinkish leaves.

2. Discovery Inn

Discovery Inn
Friday Harbor
United States
Robert
￥25,148
￥27,825 total
includes taxes & fees
Oct 2 - Oct 3
Discovery Inn
A serene outdoor seating area with a table and chairs, surrounded by lush greenery and a tree.
A grassy area with a pond, trees, and a red chair.
A spacious entryway with a wooden staircase, a patterned rug, and potted plants.
A dining table set with plates of food, glasses, and a vase of flowers.

3. Trumpeter Inn

Trumpeter Inn
Friday Harbor
United States
James
￥36,167
￥39,910 total
includes taxes & fees
Oct 1 - Oct 2
Trumpeter Inn
A living room with a sofa, armchairs, a coffee table, and a fireplace.
A landscaped garden with neatly trimmed hedges, a white picket fence, and a wooden signboard.
A waterfront promenade with benches, a gazebo, and a large white boat docked at a pier.
A hotel lobby with a reception desk, seating area, and a view of the adjacent room.

4. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Amy
￥36,174
￥40,027 total
includes taxes & fees
Oct 1 - Oct 2
Earthbox Inn & Spa
A modern interior with sofas, a table, and hanging plants.
A modern interior with a stone fireplace, hanging lamps, and a sign indicating the property is for sale.
A living room with a stone fireplace, a large window, a dark gray sofa, and a wooden coffee table.
A modern lobby with a reception desk, seating area, and a large window with a view of the sea.

5. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Jennifer
￥29,883
￥33,066 total
includes taxes & fees
Oct 4 - Oct 5
Friday Harbor Suites
A wooden cabin interior with a dining table, chairs, and a bench.
A cozy cabin interior with a large window overlooking a lake, a fireplace, and a comfortable seating area.
A lodge with multiple cabins, a dock, and a surrounding forest.
A wooden deck with a table and chairs overlooking a marina with boats and a forested hillside.

6. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Patricia
￥37,205
￥41,055 total
includes taxes & fees
Oct 19 - Oct 20
Snug Harbor Resort
A marina with boats docked in a structured layout, surrounded by water and a distant cityscape.
A restaurant with tables set for dining, large windows offering a view of boats and greenery.
A hotel with a large building, a pond in front, and trees around.
A waterfront hotel with multiple docked boats, a pier, and a view of the surrounding forested area.

7. Roche Harbor Resort

Roche Harbor Resort
Friday Harbor
United States
Nicco
￥33,690
￥39,037 total
includes taxes & fees
Oct 12 - Oct 13
Roche Harbor Resort
A marina with boats, a cruise ship, and a forested island.
A living room with a sectional sofa, a coffee table, a lamp, and a potted plant.
A kitchen with wooden cabinets, a built-in microwave, and a coffee station.
A hotel room with a bed, a TV, a painting, a wooden dresser, and a desk with a lamp.

8. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
￥25,165
￥27,845 total
includes taxes & fees
Oct 1 - Oct 2
Bird Rock Hotel
A two-story building with a covered porch, surrounded by a variety of flowering plants.
A man seated at a piano with sheet music, surrounded by books and a vase of flowers.
A living room with a grand piano, a fireplace, a sofa, and a chair.
A room with a bed, a TV, a table with chairs, a rug, and a balcony with chairs.

9. Friday Harbor Grand B&B

Friday Harbor Grand B&B
Friday Harbor
United States
Andrew
￥40,414
￥44,717 total
includes taxes & fees
Oct 4 - Oct 5
Friday Harbor Grand B&B
Two people relaxing by a fire pit with a view of a harbor and a large ship.
A coastal town at dusk with a marina, boats, and a large cruise ship docked.
A bar area with a large TV screen displaying a landscape, a bookshelf with books and bottles, and leather chairs.
A bar area with shelves of bottles and glasses, a counter with a fruit bowl, and tables with chairs.

10. Friday Harbor House

Friday Harbor House
Friday Harbor
United States
Robert
￥57,170
￥63,259 total
includes taxes & fees
Oct 14 - Oct 15
Friday Harbor House
A two-story house with a front porch, a picket fence, and a small garden area.
A conservatory with a dining table set for four, surrounded by white chairs, and a lamp on the right.
A garden with a wooden pergola, flowering plants, and a pathway leading to a house.
A balcony with a hot tub, two chairs, and a table set with plates, glasses, and a bottle.

11. Tucker House Inn

Tucker House Inn
Friday Harbor
United States
ZACHARY
￥22,664
￥25,078 total
includes taxes & fees
Oct 1 - Oct 2
Tucker House Inn
A room with a sloped ceiling and large windows offering a view of a rural landscape.
A table with various food items, including a dish with green beans, eggs, and a bowl of sauce.
A farm with rows of crops under a partly cloudy sky.
An outdoor event with people seated at tables under string lights and paper lanterns.

12. Saturn's Return

Saturn's Return
Friday Harbor
United States
Margaret
￥49,762
￥54,912 total
includes taxes & fees
Oct 6 - Oct 7
Saturn's Return
A hotel room with two beds, a large window, and a wall-mounted light fixture.
A hot tub with a metal safety rail, tiled edges, and a drain cover.
A compact kitchen with a refrigerator, microwave, coffee maker, and dishwasher.
A glass-enclosed shower with a marble backsplash and a bathtub.

13. Salish Inn

Salish Inn
Anacortes
United States
kaitlyn
￥11,707
￥15,599 total
includes taxes & fees
Oct 4 - Oct 5
Salish Inn
A hotel room with a bed, a desk with a chair, two armchairs, a small table, and a window with a view of a parking lot and trees.
A bathroom with a sink, mirror, towel rack, and a hairdryer.
A hotel room with a bed, two chairs, a small table, a desk, a window with curtains, a painting on the wall, and a view of a parking lot and trees.
A hotel room with a bed, desk, chair, TV, and a wooden shelf.

14. Cap Sante Inn

Cap Sante Inn
Anacortes
United States
Raul
￥8,080
￥11,576 total
includes taxes & fees
Sep 30 - Oct 1
Cap Sante Inn
A lakeside view with a wooden deck and chairs, a covered area with columns, and a calm lake with distant hills.
A golf course with a well-maintained lawn, trees, and a winding road.
A marina with boats, a stone bridge, and a well-maintained grassy area.
A coastal property with a circular building, rocky shoreline, clear water, and a forested hill in the background.

15. Rosario Resort

Rosario Resort
Eastsound
United States
David
￥21,975
￥28,180 total
includes taxes & fees
Sep 27 - Sep 28
Rosario Resort
A two-story house with a red roof and white exterior, featuring a front porch with red chairs and a small tree.
A spacious living area with a fireplace, patterned furniture, and large windows.
A two-story house with a balcony, a red door, and a view of the mountains.
A house with a red roof, surrounded by lush greenery and mountains in the background.

16. Anacortes Ship Harbor Inn

Anacortes Ship Harbor Inn
Anacortes
United States
Traci
￥15,429
￥17,112 total
includes taxes & fees
Oct 4 - Oct 5
Anacortes Ship Harbor Inn
A wooden pier leading to a building with large windows and a flagpole.
A wooden interior with a bench, tables, and a staircase leading to the hotel office.
A restaurant with stone walls, wooden tables, and chairs. There are large windows allowing natural light.
A wooden boardwalk leading to a building with multiple windows and lights.

17. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
United States
Diane
￥28,153
￥31,067 total
includes taxes & fees
Oct 4 - Oct 5
Lopez Islander Resort
A modern outdoor seating area with a built-in fireplace, surrounded by greenery and wooden structures.
A modern kitchen with a white countertop, a blue dishwasher, a microwave, and a hanging blue hoodie.
A room with wooden walls, a wooden table, a bench, a refrigerator stocked with beverages, and various food items and clothing on shelves.
A modern hotel room with two beds, a wooden desk, a chair, a potted plant, and a window with curtains.

18. Anacortes Inn

Anacortes Inn
Anacortes
United States
Ilene
￥13,547
￥15,339 total
includes taxes & fees
Oct 22 - Oct 23
Anacortes Inn
A room with a bed, a sofa, a window with curtains, a lamp, and a painting on the wall.
An aerial view of the San Juan Hotel with a large parking lot, multiple buildings, and a few cars parked.
A room with a television on a wooden cabinet, a lamp on a table, and a chair.
A motel with a two-story structure, multiple parking spaces, and a sign indicating it is the San Juan motel.

19. San Juan Motel

San Juan Motel
Anacortes
United States
Scott
￥10,607
￥11,761 total
includes taxes & fees
Sep 29 - Sep 30
San Juan Motel
A two-story house with a bay window, a front porch, and a well-maintained lawn with flowers.
A spacious living room with a high ceiling, a dining area with a table and chairs, a sofa with patterned cushions, and a television on the wall.
A dining area with a wooden table and chairs, a kitchen with modern appliances, and large windows with blinds.
A room with a fireplace, large windows with curtains, a patterned carpet, and a seating area with a table and chairs.

20. Sunrise Inn Villas and Suites

Sunrise Inn Villas and Suites
Anacortes
United States
Brian
￥16,869
￥20,454 total
includes taxes & fees
Oct 5 - Oct 6
Sunrise Inn Villas and Suites
View all properties
Save an average of 15% on thousands of hotels when you're signed in

Stay near popular San Juan Island attractions

A marina with boats docked, surrounded by forested hills and a town with buildings.

Roche Harbor Marina

9.4/10 (332 reviews)
Explore the waterfront in Roche Harbor with a trip to Roche Harbor Marina. While you're in the area, stroll along the seaside.
See properties
A lighthouse on a rocky coastline with the ocean in the foreground.

Lime Kiln Point State Park

9.6/10 (317 reviews)
Also known as Whale Watch Park, this diving site is one of the best places in the world to view wild orca pods from the shore.
See properties
A lighthouse on a rocky cliff by the sea.

San Juan Island National Historic Park

9.4/10 (184 reviews)
You can learn about the history of Friday Harbor with a visit to San Juan Island National Historic Park. While you're in the area, stroll along the waterfront.
See properties
People preparing kayaks on a riverbank with a small office and a red-roofed building in the background.

San Juan County Park

9.0/10 (87 reviews)
A hotspot for kayakers, this scenic and diverse campsite is the perfect retreat for both those wanting to relax and adventurists.
See properties
A landscaped garden with geometric hedges, a flagpole with a flag, and a body of water in the background.

English Camp

9.2/10 (153 reviews)
More than 150 years ago, the British Army prepared for battle on this site during the Pig War. Now, it’s a thought-provoking homage to the islands’ dramatic history.
See properties

Whale Museum

8.8/10 (89 reviews)
You can spend an afternoon browsing the exhibits at Whale Museum during your trip to Friday Harbor. While you're in the area, stroll along the waterfront.
See properties

San Juan Islands Museum of Art

8.4/10 (22 reviews)
You can spend an afternoon exploring the galleries in San Juan Islands Museum of Art during your travels in Friday Harbor. While you're in the area, stroll along the waterfront.
See properties

San Juan Islands Sculpture Park

8.8/10 (144 reviews)
Explore the great outdoors at San Juan Islands Sculpture Park, a lovely green space in Roche Harbor. While you're in the area, stroll along the seaside.
See properties

Learn more about San Juan Island

San Juan Island entices visitors with its quaint harbor towns, forest trails and the chance to see a range of wildlife, including endangered orcas.

See all hotels in San Juan Island
A marina with numerous boats docked, a wooden pier, and a forested hill in the background.

Top San Juan Island Hotel Reviews

Friday Harbor Suites

Friday Harbor Suites

10/10 Excellent
"Clean room and great staff"
Christina 1-night trip
Posted 1 hour ago
Friday Harbor Suites
Discovery Inn

Discovery Inn

10/10 Excellent
"Very friendly and welcoming. The location is also great and close to downtown."
Julie 3-night trip
Posted 2 hours ago
Discovery Inn
Earthbox Inn & Spa

Earthbox Inn & Spa

10/10 Excellent
"Well appointed spa and dog friendly hotel within walking distance to town and the Friday Harbor ferry terminal. Quiet clean rooms set back from the main street, very comfortable beds, and nice amenities. Staff and manager were very friendly and helpful with arrangements. I would definitely stay here again in the future."
Mary M 3-night trip
Posted 4 hours ago
Earthbox Inn & Spa
The Marina Inn

The Marina Inn

10/10 Excellent
"We loved that they had games for the kids to play and a little lending library. And lots of tasty treats."
Joseph 2-night trip
Posted 6 hours ago
The Marina Inn
Anacortes Inn

Anacortes Inn

10/10 Excellent
"Great spot in one of the coolest downs in the PNW"
Kevin 5-night trip
Posted 1 day ago
Anacortes Inn
The Orca Inn

The Orca Inn

8/10 Good
"Great place in the perfect location while attending a nearby wedding. In my process range, no complaints."
James 2-night trip
Posted 1 day ago
The Orca Inn
Inn to the Woods B&B

Inn to the Woods B&B

10/10 Excellent
"It's a very charming property. My bed was very comfortable, and I had a private hot tub on the patio with a view of Egg Lake! Breakfast was delicious and thoughtful. There are two adorable dogs on the property which made me very happy!"
Anu 3-night trip
Posted 2 days ago
Inn to the Woods B&B
Best Western Plus Oak Harbor Hotel & Conference Center

Best Western Plus Oak Harbor Hotel & Conference Center

10/10 Excellent
"We were traveling with dogs and given a room with a slider that opened to a nice park to walk the dogs. I wish the park was fenced so the dogs could run around a bit. The room was beautifully maintained, sunny and cheerful. There is an excellent Chinese restaurant right beside the hotel. We walked over and had a wonderful meal. The staff was friendly and accommodating. The hot tub was excellent, but the pool was too small. There was a ramp into the pool making access very easy. I would definitely stay here again."
Diane 5-night trip
Posted 5 days ago
Best Western Plus Oak Harbor Hotel & Conference Center
Westcott Bay Beachfront Home - Hot Tub with a view of the Bay

Westcott Bay Beachfront Home - Hot Tub with a view of the Bay

10/10 Excellent
"Beautiful spot! Can't wait to visit again!"
Cameron D. 2-night trip
Posted 2 weeks ago
Westcott Bay Beachfront Home - Hot Tub with a view of the Bay

More cheap stays in San Juan Island

Anacortes Inn

Anacortes Inn

3006 Commercial Ave Anacortes WA
￥13,547
￥15,339 total
Oct 22 - Oct 23
includes taxes & fees
8.8/10 Excellent! (619 reviews)
Anacortes Inn
The Orca Inn

The Orca Inn

770 Mullis St Friday Harbor WA
￥14,370
￥15,901 total
Oct 20 - Oct 21
includes taxes & fees
8.2/10 Very Good! (161 reviews)
The Orca Inn
Auld Holland Inn

Auld Holland Inn

33575 State Route 20 Oak Harbor WA
￥15,174
￥16,888 total
Oct 15 - Oct 16
includes taxes & fees
Auld Holland Inn
Coachman Inn & Suites

Coachman Inn & Suites

32959 Highway 20 Oak Harbor WA
￥20,426
￥22,735 total
Oct 6 - Oct 7
includes taxes & fees
Coachman Inn & Suites
Best Western Plus Oak Harbor Hotel & Conference Center

Best Western Plus Oak Harbor Hotel & Conference Center

33175 State Route 20 Oak Harbor WA
￥22,859
￥25,442 total
Oct 4 - Oct 5
includes taxes & fees
9/10 Wonderful! (1,002 reviews)
Best Western Plus Oak Harbor Hotel & Conference Center
The Marina Inn

The Marina Inn

3300 Commercial Ave Anacortes WA
￥24,378
￥27,351 total
Sep 27 - Sep 28
includes taxes & fees
9.6/10 Exceptional! (1,004 reviews)
The Marina Inn

Hotels in San Juan Island with star-rating

Explore a world of travel with Expedia