Find hotels in San Juan Island, WA from ¥12,359

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Compare 786 hotels, room rates, hotel reviews and availability. Most hotels are fully refundable.

Majestic Inn & Spa
4.0 star property
9.2 out of 10, Wonderful, (999)
"This is a historical property, and very well maintained. The rooms have the best soaking tubs ever! I would have given it a five, but the rooms need a little facelift and some new mattresses. The restaurant is great, and so is the spa! 10/10 recommend "
The price is ¥21,684
¥24,339 total
includes taxes & fees
May 20 - May 21
Majestic Inn & Spa
Friday Harbor Suites
2.5 star property
8.2 out of 10, Very Good, (766)
"Perfect location to walk everywhere. Has all the amenities you could ask for. It is very clean and was perfect for our stay. "
The price is ¥25,793
¥28,552 total
includes taxes & fees
May 27 - May 28
Friday Harbor Suites
Anacortes Ship Harbor Inn
3.0 star property
8.8 out of 10, Excellent, (1000)
"Nice cute place, great view of ferry terminal and ships, quiet and relaxing place! Will use again when going to San Juan Islands."
The price is ¥24,874
¥27,560 total
includes taxes & fees
May 19 - May 20
Anacortes Ship Harbor Inn
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Salish Inn
2.5 star property
8.6 out of 10, Excellent, (398)
"It was clean and quiet."
The price is ¥17,760
¥19,678 total
includes taxes & fees
May 23 - May 24
Salish Inn
Earthbox Inn & Spa
2.5 star property
8.6 out of 10, Excellent, (785)
"Love this place! Have stayed here many times. It does not disappoint."
The price is ¥32,852
¥36,367 total
includes taxes & fees
May 19 - May 20
Earthbox Inn & Spa
Anaco Bay Inn
2.0 star property
8.2 out of 10, Very Good, (1000)
"Nice, quiet, independent property with friendly owner/operators on site. Breakfast is provided, and the rate is one of the least expensive in town. Anacortes is a nice town with lots of shopping and food options."
The price is ¥15,488
¥17,160 total
includes taxes & fees
May 16 - May 17
Anaco Bay Inn
The Marina Inn
2.5 star property
9.2 out of 10, Wonderful, (1001)
"Small but very well maintained "
The price is ¥19,555
¥21,981 total
includes taxes & fees
May 19 - May 20
The Marina Inn
Sunrise Inn Villas and Suites
2.0 star property
8.6 out of 10, Excellent, (534)
"For an overnight stay in Anacortes was what was neede. Thanks"
The price is ¥16,733
¥18,541 total
includes taxes & fees
May 23 - May 24
Sunrise Inn Villas and Suites
Snug Harbor Resort
2.5 star property
9.8 out of 10, Exceptional, (290)
"Beautiful place with friendly staff. Highlight were the deers who came by the windows."
Snug Harbor Resort
Fidalgo Country Inn
2.0 star property
7.2 out of 10, Good, (458)
"I have done reviews for hotels before and the final numerical result comes out different from what I would actually give the hotel. I would rate this place between 7 to 7.5. The location is great. Room was clean. My room faced the country restaurant. Very noisy traffic, but wasn’t a big issue for me. Might be for some. The windows were quite dirty and looking out of them was a constant reminder. The glass doorway to get outside was also filthy and the stains on the hall carpets that look like...
The price is ¥12,359
¥14,319 total
includes taxes & fees
May 17 - May 18
Fidalgo Country Inn
Bird Rock Hotel
2.0 star property
8.8 out of 10, Excellent, (308)
"Cool old building with modern updates. The remote check in was clear and smooth.We received a couple texts from staff checking in during our stay, so it still felt very personable. Would highly recommend."
The price is ¥22,684
¥28,577 total
includes taxes & fees
May 19 - May 20
Bird Rock Hotel
The Orca Inn
2.0 star property
7.6 out of 10, Good, (792)
"Clean, basic lodging in “historic” buildings. Friendly and welcoming hosts. Would stay here again for short stays. "
The price is ¥15,642
¥17,316 total
includes taxes & fees
May 19 - May 20
The Orca Inn
Lopez Islander Resort
3.5 star property
8.4 out of 10, Very Good, (258)
"Wonderful trip this weekend. Great view from our room. Front office was helpful and friendly. We were staying during off season so the pool wasn’t open (no big deal). "
The price is ¥27,965
¥30,874 total
includes taxes & fees
Jun 10 - Jun 11
Lopez Islander Resort
Tucker House Inn
4.0 star property
9.2 out of 10, Wonderful, (215)
"Last minute reservation. Such a great time and location. Would definitely recommend!"
The price is ¥44,660
¥49,439 total
includes taxes & fees
May 16 - May 17
Tucker House Inn
Friday Harbor House
3.5 star property
9.6 out of 10, Exceptional, (192)
"The hotel has a stellar location overlooking Friday Harbor and the ferries. It was impeccably clean and had nice touches such as San Juan Roasters coffee pourover, fireplaces, and robes in the rooms. It is the perfect place for a weekend getaway!"
The price is ¥63,984
¥70,831 total
includes taxes & fees
May 20 - May 21
Friday Harbor House
West Beach Resort
3.5 star property
9.2 out of 10, Wonderful, (83)
"Great views from the picture windows and porch of our waterfront cabin. The included bundle of firewood was a plus. The only negative was not being able to use the hot tub right upon opening time at 9:30 am which cut enjoyment of that feature down a lot. My boyfriend is a huge hot tub lover and we had to hurry to check out by 11:00am. The beds, linens and pillows were all really nice! Overall the property is just what it reports and I would likely book here again. "
The price is ¥40,049
¥44,213 total
includes taxes & fees
May 20 - May 21
West Beach Resort
The Edenwild Boutique Inn
2.5 star property
9.4 out of 10, Exceptional, (205)
"I’m in room number five. I would work on the lighting. It’s very glaring. A lamp or two would be great."
The price is ¥20,675
¥22,824 total
includes taxes & fees
May 16 - May 17
The Edenwild Boutique Inn
Deer Harbor Inn
3.0 star property
8.2 out of 10, Very Good, (143)
"Adorable cabin, with cozy rooms. Matthew’s Smokehouse in the back of the property was delicious! Would definitely recommend as a great place to stay while you’re on Orcas. "
The price is ¥33,622
¥37,118 total
includes taxes & fees
May 16 - May 17
Deer Harbor Inn
Trumpeter Inn
3.0 star property
9.8 out of 10, Exceptional, (186)
"Beautiful location and property. Holly was the perfect hostess. Next we will stay longer. "
The price is ¥31,210
¥34,456 total
includes taxes & fees
May 16 - May 17
Trumpeter Inn
Roche Harbor Resort
3.0 star property
9.2 out of 10, Wonderful, (354)
"I recently stayed at the Roche Harbor Resort. The location is very pretty, with lots of greenery and proximity to the water. Our condo was spacious, but it had a leak. Other than that, it was good."
Roche Harbor Resort
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Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.