Nagasaki Prefecture Vacations & Trips from ￥47,486

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Top destinations in Nagasaki Prefecture

Drone view of Goto Fukue island, Nagasaki, Japan
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Goto

Goto

The Latest Nagasaki Prefecture Vacation Packages

Price found within the past 48 hours. Click for updated prices.
Hotel Monterey Nagasaki

Hotel Monterey Nagasaki

4 out of 5
Price was ￥64,621, price is now ￥47,486 per person
￥47,486
per person
May 29 - Jun 2
found 1 day ago
Roundtrip flight included
Tokyo (NRT) to Nagasaki (NGS)
8.8/10 Excellent! (1,000 reviews)
Yes, staff very helpful

Reviewed on Dec 11, 2025

Tsuwabuki-no-Hana

Tsuwabuki-no-Hana

3 out of 5
Save 100% on your flight
Price was ￥167,575, price is now ￥105,888 per person
￥105,888
per person
Apr 24 - Apr 26
found 8 hours ago
Roundtrip flight included
Tokyo (TYO) to Nagasaki (NGS)
6/10 (1 review)
Omuta Heights

Omuta Heights

2.5 out of 5
Save 100% on your flight
Price was ￥194,680, price is now ￥123,020 per person
￥123,020
per person
May 15 - May 17
found 1 day ago
Roundtrip flight included
Tokyo (TYO) to Nagasaki (NGS)
8/10 Very Good! (42 reviews)
Hotel Nagasaki

Hotel Nagasaki

3 out of 5
Price was ￥72,632, price is now ￥55,170 per person
￥55,170
per person
Apr 18 - Apr 20
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8.6/10 Excellent! (255 reviews)
This is an amazing. Way exceed my expectation and the service is great. The staff is also very helpful and go extra steps to help.

Reviewed on Jan 7, 2025

Hotel Concerto Nagasaki

Hotel Concerto Nagasaki

3.5 out of 5
Price was ￥64,480, price is now ￥50,254 per person
￥50,254
per person
May 29 - Jun 2
found 1 day ago
Roundtrip flight included
Tokyo (NRT) to Nagasaki (NGS)
9/10 Wonderful! (166 reviews)
Welcoming staff. Interesting hotel room.

Reviewed on Feb 27, 2026

Where to stay in Nagasaki Prefecture

Find the best Nagasaki Prefecture areas and neighborhoods for the activities you enjoy most. Learn more about Nagasaki Prefecture
Nagasaki Chinatown showing signage and street scenes

Nagasaki Chinatown

1 out of top 10 points of interest in this area
5/5(11 area reviews)

It’s bright and bold and provides an exciting perspective on the city. Walk through this area to experience various businesses and cultural aspects.

Find hotels in Nagasaki Chinatown

Nagasaki Prefecture Hotel Deals

Toyoko Inn Tsushima Hitakatsu

Toyoko Inn Tsushima Hitakatsu

3 out of 5
1217-5, Kamitsushimamachi Nishido Tsushima Nagasaki
The price is ￥11,264 per night from Mar 13 to Mar 14
￥11,264
￥12,390 total
Mar 13 - Mar 14
Toyoko Inn Tsushima Hitakatsu
Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

3.5 out of 5
6 Huis Ten Bosch Sasebo Nagasaki-ken
Fully refundableReserve now, pay when you stay
The price is ￥16,157 per night from Mar 9 to Mar 10
￥16,157
￥19,551 total
Mar 9 - Mar 10
8.8/10 Excellent! (1,583 reviews)
Good: location and breakfast Bad: bathroom smell and limited English speaking staff

Reviewed on Jan 21, 2026

Hotel Nikko Huis Ten Bosch
Hotel Forza Nagasaki

Hotel Forza Nagasaki

3.5 out of 5
4-11 Hamamachi Nagasaki
The price is ￥6,204 per night from Mar 8 to Mar 9
￥6,204
￥6,824 total
Mar 8 - Mar 9
9/10 Wonderful! (1,009 reviews)
Great location, clean and tidy. No safe in the room! (Not sure how this would go down with travel insurance if you had items stolen. Unlikely in Japan, but not impossible) Shower over bathtub is not as good as many of the newer hotels walk in showers. It’s easy to get to on the tram from the train ...

Reviewed on Feb 28, 2026

Hotel Forza Nagasaki
See all 450 properties in Nagasaki Prefecture
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much does a Nagasaki Prefecture vacation package cost?
Choose from any combination of flights, hotels and car rentals, and you can be vacationing in Nagasaki Prefecture from just ￥47,486. And the more you bundle, the more you save. Your dream escape has never been more affordable.
How do I get a cheap travel package to Nagasaki Prefecture?
Just think of all the fun things you could do in Nagasaki Prefecture with a wad of extra cash in your pocket. Watch your savings stack up when you combine your hotel and flights into a Nagasaki Prefecture vacation package. You have loads of choice when you book your trip with Expedia too. In fact, you can choose from more than 550 air carriers and 1,000,000 hotels across the globe. Whether you're heading off with the entire family or surprising your special someone, exploring Nagasaki Prefecture is better with a package.
Where should I stay in Nagasaki Prefecture?
If you've always dreamed of exploring Nagasaki Atomic Bomb Museum and Glover Garden, Nagasaki is calling your name.
What are the top hotels in Nagasaki Prefecture?
Look up Quintessa Hotel Sasebo and Smile Hotel Sasebo. They're the first choice for many travelers headed to Nagasaki. If Sasebo is on your travel itinerary, Toyoko Inn Sasebo Ekimae and Hotel Resol Sasebo are both great options.
How far in advance should I book my Nagasaki Prefecture vacation?
To bag cheap prices, book ASAP. Airlines usually release tickets, along with some of the lowest fares, around a year in advance. Hotels, car rental and activities should also be booked well in advance so you can have the pick of the bunch. If you've decided on a last-minute getaway in Nagasaki Prefecture, there are always plenty of great deals on Expedia. Book your escape today!
What does an Expedia Nagasaki Prefecture travel package include?
That's up to you. You can select from a range of Nagasaki Prefecture bundles, such as a rental car, flight and hotel. You can also book a flight and a hotel, or a rental car with a flight. Once you've made your booking, you can add on the fun stuff like tours and activities. Whatever your Nagasaki Prefecture break looks like, you're sure to save!
What should I know before booking a Nagasaki Prefecture travel package?
A travel package can be easier on the bank balance than separately booking everything you need for your escape. For example, combine your hotels, flights and rental cars and save a packet. Whatever your vacation plans, you're sure to find a package that's perfect for you.
If I'm not able to travel, can I cancel my Nagasaki Prefecture vacation package?
It's difficult to predict what tomorrow might bring, so it's comforting to know that you can change or cancel your Nagasaki Prefecture vacation package. If your booking was made in the last 24 hours, you may be eligible for a refund. If it's an older booking, your airline, hotel or car rental company may charge a fee. Visit our Customer Service Portal for more information.

Discover the most popular places to visit in Nagasaki Prefecture

Huis Ten Bosch, Nagasaki, Japan; Shutterstock ID 559752571

Huis Ten Bosch

4.5/5(9 reviews)

Have a fun-filled day at Huis Ten Bosch and find out why this is a popular theme park in Sasebo. Stroll along the seaside or visit the spas while you're in the area.

Huis Ten Bosch
Aerial photo of Sasebo, Nagasaki

US Navy Sasebo Base

4.5/5(11 reviews)

US Navy Sasebo Base is just one of the places to see in Sasebo, so why not enjoy the other things to explore during your travels? Stroll along the marina or visit the spas while you're in the area.

US Navy Sasebo Base
Sasebo_SaseboHarbor_6104018_10

Sasebo Harbor

4.5/5(12 reviews)

Explore the waterfront in Sasebo with a trip to Sasebo Harbor. Discover the area's entertainment venues and spas.

Sasebo Harbor

What to do in Nagasaki Prefecture

eSIM: Airalo Japan Package

eSIM: Airalo Japan Package

￥546
per traveler
eSIM: Airalo Japan Package
Beach picnic set

Beach picnic set

￥2,564
per traveler
Beach picnic set
Gunkanjima Digital Museum Attraction Ticket

Gunkanjima Digital Museum Attraction Ticket

￥1,865
per adult
Gunkanjima Digital Museum Attraction Ticket
See all activities in Nagasaki Prefecture

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* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.