Nagasaki Prefecture Vacations & Trips from ￥54,144

Book a Hotel + Flight or Car together to unlock savings

    deals illustration
    Better together
    Save up to ￥45,448 when you book a flight and hotel together*
    stays illustration
    Find the right fit
    With over 300,000 hotels worldwide, it's easy to create a perfect package
    luggage illustration
    Rest easy
    Plan, book, and manage your trip all in one place

Top destinations in Nagasaki Prefecture

Nagasaki
FlightsFlightsHotelsHotels

Nagasaki

Nagasaki

The Latest Nagasaki Prefecture Vacation Packages

Price found within the past 48 hours. Click for updated prices.
Grand Base Urakami

Grand Base Urakami

3 out of 5
Save 100% on your flight
per person
Sep 5 - Sep 8
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8.4/10 Very Good! (45 reviews)
This hotel is amazing!! We were glad it was our last hotel as we would have been very disappointed with all of our other hotels in other cities if we would have started with this one! 4 separate beds, a nice living room area, a nice bathroom, and small kitchen. The only suggestion is some kind of hanger contraption would have been handy to dry laundry. We were able to rig up a clothes line between the closet area and our suitcase.

Reviewed on Jun 6, 2025

UNZEN HANZUIRYO

UNZEN HANZUIRYO

4 out of 5
per person
Aug 11 - Aug 13
found 13 hours ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
10/10 Exceptional! (1 review)
GRAND BASE Nagasaki Nakamachi

GRAND BASE Nagasaki Nakamachi

3 out of 5
Save 100% on your flight
per person
Sep 5 - Sep 8
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8.6/10 Excellent! (33 reviews)
The room overall was nice with the separate washroom and traditional shower, a kitchen, and a TV. The only bad part was the cleanliness of the couch and beds. The couch had an unlimited amount of stains from who knows where. The beds also had a bit of a stench to them, but you get used to it after a bit.

Reviewed on May 17, 2025

URARI TAKEO GARDEN TERRACE SPA RESORTS

URARI TAKEO GARDEN TERRACE SPA RESORTS

3.5 out of 5
Save 100% on your flight
per person
Sep 29 - Oct 2
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8/10 Very Good! (36 reviews)
Hotel Nagasaki

Hotel Nagasaki

3 out of 5
Save 100% on your flight
per person
Sep 5 - Sep 8
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8.4/10 Very Good! (213 reviews)
This is an amazing. Way exceed my expectation and the service is great. The staff is also very helpful and go extra steps to help.

Reviewed on Jan 7, 2025

Where to stay in Nagasaki Prefecture

Find the best Nagasaki Prefecture areas and neighborhoods for the activities you enjoy most. Learn more about Nagasaki Prefecture
Nagasaki Chinatown showing signage and street scenes

Nagasaki Chinatown

5/5(11 area reviews)

It’s bright and bold and provides an exciting perspective on the city. Walk through this area to experience various businesses and cultural aspects.

Find hotels in Nagasaki Chinatown

Nagasaki Prefecture Hotel Deals

Hotel Nikko Huis Ten Bosch
Hotel Nikko Huis Ten Bosch
3.5 out of 5
6 Huis Ten Bosch, Sasebo, Nagasaki-ken
Fully refundableReserve now, pay when you stay
The price is ￥13,884 per night from Jul 8 to Jul 9
￥13,884
￥16,799 total
Jul 8 - Jul 9
8.8/10 Excellent! (1,601 reviews)
"Very friendly staff. Right next door to Haus Ten Bosch! Great bathhouse. Very clean rooms. A little outdated but very comfortable. Breakfast was a feast with many options."

Reviewed on Jun 26, 2025

Hotel Nikko Huis Ten Bosch
Belleview Nagasaki Dejima
Belleview Nagasaki Dejima
3 out of 5
1-20 Edo-machi, Nagasaki, Nagasaki
Fully refundable
The price is ￥5,784 per night from Jul 6 to Jul 7
￥5,784
￥6,998 total
Jul 6 - Jul 7
8.6/10 Excellent! (933 reviews)
"Beautiful, peaceful and clean property. I love it. One days i'll be back!"

Reviewed on Jun 9, 2025

Belleview Nagasaki Dejima
Hotel Okura JR Huis Ten Bosch
Hotel Okura JR Huis Ten Bosch
4 out of 5
10 Huis Ten Bosch cho, Sasebo, Nagasaki
Fully refundableReserve now, pay when you stay
The price is ￥11,811 per night from Jul 9 to Jul 10
￥11,811
￥15,288 total
Jul 9 - Jul 10
9.2/10 Wonderful! (1,008 reviews)
Jeff and Celene
"Nice place. Room was beautiful. Spacious compared to typical Japanese accommodations which we mostly did on this trip. Great buffets."

Reviewed on May 24, 2025

Hotel Okura JR Huis Ten Bosch
See all 405 properties in Nagasaki Prefecture
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much does a Nagasaki Prefecture vacation package cost?
Choose from any combination of flights, hotels and car rentals, and you can be vacationing in Nagasaki Prefecture from just ￥54,144. And the more you bundle, the more you save. Your dream escape has never been more affordable.
How do I get a cheap travel package to Nagasaki Prefecture?
Just think of all the fun things you could do in Nagasaki Prefecture with a wad of extra cash in your pocket. Watch your savings stack up when you combine your hotel and flights into a Nagasaki Prefecture vacation package. You have loads of choice when you book your trip with Expedia too. In fact, you can choose from more than 550 air carriers and 1,000,000 hotels across the globe. Whether you're heading off with the entire family or surprising your special someone, exploring Nagasaki Prefecture is better with a package.
Where should I stay in Nagasaki Prefecture?
If you've always dreamed of exploring Nagasaki Atomic Bomb Museum and Glover Garden, Nagasaki is calling your name.
What are the top hotels in Nagasaki Prefecture?
Look up Quintessa Hotel Sasebo and Smile Hotel Sasebo. They're the first choice for many travelers headed to Nagasaki. If Sasebo is on your travel itinerary, Toyoko Inn Sasebo Ekimae and Hotel Resol Sasebo are both great options.
How far in advance should I book my Nagasaki Prefecture vacation?
To bag cheap prices, book ASAP. Airlines usually release tickets, along with some of the lowest fares, around a year in advance. Hotels, car rental and activities should also be booked well in advance so you can have the pick of the bunch. If you've decided on a last-minute getaway in Nagasaki Prefecture, there are always plenty of great deals on Expedia. Book your escape today!
What does an Expedia Nagasaki Prefecture travel package include?
That's up to you. You can select from a range of Nagasaki Prefecture bundles, such as a rental car, flight and hotel. You can also book a flight and a hotel, or a rental car with a flight. Once you've made your booking, you can add on the fun stuff like tours and activities. Whatever your Nagasaki Prefecture break looks like, you're sure to save!
What should I know before booking a Nagasaki Prefecture travel package?
A travel package can be easier on the bank balance than separately booking everything you need for your escape. For example, combine your hotels, flights and rental cars and save a packet. Whatever your vacation plans, you're sure to find a package that's perfect for you.
If I'm not able to travel, can I cancel my Nagasaki Prefecture vacation package?
It's difficult to predict what tomorrow might bring, so it's comforting to know that you can change or cancel your Nagasaki Prefecture vacation package. If your booking was made in the last 24 hours, you may be eligible for a refund. If it's an older booking, your airline, hotel or car rental company may charge a fee. Visit our Customer Service Portal for more information.

Discover the most popular places to visit in Nagasaki Prefecture

Huis Ten Bosch

Huis Ten Bosch

4.5/5(9 reviews)

Have a fun-filled day at Huis Ten Bosch and find out why this is a popular theme park in Sasebo. Stroll along the seaside or visit the spas while you're in the area.

Huis Ten Bosch
Nagasaki Station Area

Nagasaki Station Area

Learn about the local history of Nagasaki when you spend time at Nagasaki Station Area. Stroll along the waterfront or experience the area's museums.

Nagasaki Station Area
Hashima Island

Hashima Island

5/5(1 review)

Tour this place that was once the most densely populated area in the world until everyone suddenly left. Feelings of awe and eeriness predominate and cameras click.

Hashima Island

What to do in Nagasaki Prefecture

Gunkanjima Digital Museum Attraction Ticket

Gunkanjima Digital Museum Attraction Ticket

￥1,865
per adult
Gunkanjima Digital Museum Attraction Ticket
Nagasaki Like a Local: Customized Guided Tour

Nagasaki Like a Local: Customized Guided Tour

￥14,465
per adult
Nagasaki Like a Local: Customized Guided Tour
Nagasaki Half-Day Private Tour with Nationally-Licensed Guide

Nagasaki Half-Day Private Tour with Government-Licensed Guide

￥34,000
per adult
Nagasaki Half-Day Private Tour with Government-Licensed Guide
See all activities in Nagasaki Prefecture

Other vacations you might like

* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.