Top 10 Hotels in Harpers Ferry, IA from ￥10,969 - Competitive Prices

A river surrounded by dense green forest and hills in the background.

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Go beyond your typical stay in Harpers Ferry

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Our top choices for Harpers Ferry hotels

A hotel room with a bed, a desk with a computer, a chair, a TV, and a large window with curtains.

A bathroom with a shower curtain, a towel rack with towels, and a toilet.

A hotel room with a bed, a sofa, and two large wall-mounted pictures.

A hotel room with two beds, a nightstand, a lamp, and two wall-mounted pictures.

1. Northwood Inn Prairie Du Chien

Southside

Mark

￥9,839

￥10,969 total

includes taxes & fees

Oct 27 - Oct 28

A modern living room with a sofa, coffee table, and red chairs. There is a kitchen area with a counter and appliances. A fireplace is visible in the background.

A spacious living room with a fireplace, a sofa set, and a coffee table.

A reception desk at Windsor Place Inn with a stone wall backdrop, a clock, and a Dell computer.

A spacious living room with a black leather sofa, a wooden coffee table, and a unique pineapple-shaped lamp. A kitchen area is visible in the background with a stone wall and a sign reading "Windsor Place Inn."

2. Windsor Place Inn

Southside

Debra

￥11,311

￥12,499 total

includes taxes & fees

Sep 27 - Sep 28

A bedroom with a bed, two white wicker chairs, a small white table, and a wooden floor.

A hotel lobby with a wooden door, a clock, a framed picture, a coffee maker, and a dining area with a chair and table.

A bathroom with two sinks, a mirror, and a shower area.

A motel with a signboard, a parking lot, and a road in front.

3. Prairie Voyager

Southside

Jeff

￥11,632

￥12,969 total

includes taxes & fees

Oct 5 - Oct 6

A bear in an indoor water park with slides and a tree-like structure.

A bar area with a wooden counter, black bar stools, and a mounted deer head.

A modern interior with a dining area, blue sliding doors, and a flat-screen TV on the wall.

A hotel room with a bed, a desk with a computer, a TV, and a window with curtains.

4. Country Inn & Suites by Radisson, Prairie du Chien

Prairie Du Chien

Daniel

￥14,572

￥16,249 total

includes taxes & fees

Oct 27 - Oct 28

A compact room with two beds, a kitchenette, and a TV mounted on the wall.

A small wooden cabin with a single door and a window, a bench, and a table outside.

A compact kitchen with a red microwave, a coffee maker, and a sink.

A bathroom with a white sink, a mirror, and a wooden door frame.

5. Scenic Valley Motel

Lansing

Maureen

￥9,275

￥13,533 total

includes taxes & fees

Sep 28 - Sep 29

An indoor swimming pool with a blue interior, surrounded by a seating area with blue cushions and wicker furniture.

A patio area with outdoor seating and a covered section, adjacent to a building with large windows.

A reception area with a stone wall, wooden reception desk, and a herringbone patterned floor.

A hotel room with a large bed, two bedside tables with lamps, a TV, a shower area, and a bathroom.

6. AmericInn by Wyndham Prairie du Chien

Prairie Du Chien

Angela

￥11,898

￥13,148 total

includes taxes & fees

Oct 11 - Oct 12

A modern hotel room with a kitchenette, a bed, a sofa, and a TV.

A pool area with a blue chair, metal handrails, and large arched windows.

A hotel lobby with a reception desk, seating area, and large windows.

7. Microtel Inn & Suites by Wyndham Prairie du Chien

Southside

Russ

￥11,455

￥12,773 total

includes taxes & fees

Oct 4 - Oct 5

A wooden reception desk with a clock and a 'No Smoking' sign.

A room with a wooden wall, a desk with a lamp, and a shelf with various items.

A restaurant with wooden tables and chairs, a coffee machine, and a counter with a menu.

A cozy living room with a fireplace, leather sofa, wooden chairs, a coffee table, and a flat-screen TV mounted on a stone wall.

8. Boarders Inn & Suites by Cobblestone Hotels – Waukon

Waukon

Greg

￥13,423

￥15,034 total

includes taxes & fees

Oct 1 - Oct 2

A deck with outdoor seating, a fire pit, and a view of a river and bridge.

An indoor dining area with tables and chairs, wooden planters with plants, and hanging light fixtures.

A sunset view over a lake with a bench and ferns in the foreground.

A multi-story building with a parking lot in front.

9. Waterfront Hotel

Prairie Du Chien

WESTCOTT

￥21,091

￥23,518 total

includes taxes & fees

Oct 26 - Oct 27

A wooden cabin-style room with a large mirror, a bed, a vanity with a mirror, and a bathtub.

An indoor swimming pool with a wooden ceiling, lounge chairs, and potted plants.

A hotel reception desk with a sign reading "Quality by Choice Hotels," a digital check-in kiosk, a telephone, and a vase with flowers.

A hot tub with metal steps and a wooden frame, a sign indicating pool access for persons with infectious diseases, and a Whirlpool switch sign.

10. Quality Inn & Suites Prairie Du Chien

Southside

John

￥10,516

￥11,621 total

includes taxes & fees

Oct 4 - Oct 5

A wooden deck with a white railing, surrounded by greenery and a stone wall.

A cozy log cabin bedroom with a large bed, two wall-mounted lamps, a ceiling fan, and a rustic decor.

A room with a sliding glass door leading to a deck, a small table with chairs, a wooden cabinet, and a trash can.

A patio area with a stone fire pit, outdoor seating, and string lights.

11. Trickling Waters Retreat

Marquette

Roger

￥10,954

￥12,268 total

includes taxes & fees

Sep 27 - Sep 28

A hotel room with two beds, a desk with a computer, a TV, and a window with curtains.

A hotel reception area with a coffee machine, a refrigerator, and a self-service beverage dispenser.

A covered pavilion with a stone plaque, a picnic area, and a view of the mountains.

12. Comfort Inn & Suites Marquette - Prairie du Chien

Marquette

Debra

￥11,466

￥12,842 total

includes taxes & fees

Oct 21 - Oct 22

A room with two wooden beds, a carpeted floor, and wooden paneling on the walls.

A compact kitchenette with a microwave, coffee maker, and mini-fridge.

An aerial view of a property with a large building, a parking area, and a road.

A bathroom with a toilet, a sink, a wooden shelf with towels, a shower, and a mirror.

13. Sportsmen Motel

Dorchester

Lois

￥10,111

￥14,848 total

includes taxes & fees

Oct 11 - Oct 12

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Stay near popular Harpers Ferry attractions

Yellow River State Forest

9.4/10 (72 reviews)

Nestled in Iowa's Driftless Area, Yellow River State Forest offers 25 miles of trails through dramatic ridges and dense woodlands. Enjoy primitive camping and trout fishing in this serene 8,500-acre wilderness retreat.

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Waukon Junction Wildlife Area

You can take time to visit Waukon Junction Wildlife Area during your travels to Harpers Ferry. While you're in the area, wander around the parks.

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Harpers Ferry City Library

This community library ranks thirteenth nationally among similar-sized towns. Browse the diverse collection, attend a craft fair, or utilize the free public computers in this welcoming local hub.

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Mud Hen Lake

Commune with nature and explore the great outdoors at Mud Hen Lake during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Bluffview Park

Explore the great outdoors at Bluffview Park, a lovely green space in Harpers Ferry. While you're in the area, wander around the parks.

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Noble's Island

Commune with nature and explore the great outdoors at Noble's Island during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Rittenhouse Lake

Commune with nature and explore the great outdoors at Rittenhouse Lake during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Murray Island

Commune with nature and explore the great outdoors at Murray Island during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Learn more about Harpers Ferry

Nestled along the Mississippi River, this charming town invites visitors to paddle through Butters Lake or spot wildlife at Waukon Junction Wildlife Area. Hike among ancient Native American burial mounds at Effigy Mounds National Monument or explore the forested trails of Yellow River State Forest.

See all hotels in Harpers Ferry

A river winding through a forested landscape with a railway track alongside it.

Top Harpers Ferry Hotel Reviews

Waterfront Hotel

10/10 Excellent

"Beautiful views, large comfortable room, very nice on-site pub with live music."

Quality Inn & Suites Prairie Du Chien

8/10 Good

"more towels and washcloths in room when you know guests are there for more than 1 night"

Windsor Place Inn

8/10 Good

"Nice large room, quiet."

Comfort Inn & Suites Marquette - Prairie du Chien

10/10 Excellent

"Great for one night stop. Not very quiet because of the train."

Log Cabin next to the Mississippi River

10/10 Excellent

"Very cute little cabin! We loved the coziness and loved sitting on the deck listening to the birds. We even heard an owl! The train blasting its horn at night was definitely something, but we did expect it as that’s in the listing. It was everything we needed for a weekend away."

Microtel Inn & Suites by Wyndham Prairie du Chien

8/10 Good

"The staff member checking in was very slow and confusing. The staff member the next morning was excellent. The room was as expected and smelled fresh and clean."

Northwood Inn Prairie Du Chien

8/10 Good

"Good variety for breakfast, Sausage was over cooked"

AmericInn by Wyndham Prairie du Chien

10/10 Excellent

"We only stayed one night. But definitely enjoyed our stay it was quiet, and clean"

Romantic Get-a-Way!! 1954 Rail Road Caboose!! Relaxing Hot Tub!

10/10 Excellent

"It was tight for 4 adults. I would be prepared to be cozy."

More cheap stays in Harpers Ferry

Northwood Inn Prairie Du Chien

1930 S Marquette Rd Prairie Du Chien WI

￥9,839

￥10,969 total

Oct 27 - Oct 28

includes taxes & fees

8.4/10 Very Good! (179 reviews)

Quality Inn & Suites Prairie Du Chien

37268 US Highway 18 Prairie Du Chien WI

￥10,516

￥11,621 total

Oct 4 - Oct 5

includes taxes & fees

Microtel Inn & Suites by Wyndham Prairie du Chien

1833 S Marquette Road Prairie Du Chien WI

￥11,455

￥12,773 total

Oct 4 - Oct 5

includes taxes & fees

8.2/10 Very Good! (642 reviews)

Comfort Inn & Suites Marquette - Prairie du Chien

100 North Street Marquette IA

￥11,466

￥12,842 total

Oct 21 - Oct 22

includes taxes & fees

8.8/10 Excellent! (1,005 reviews)

Prairie Voyager

1010 S Marquette Rd Prairie Du Chien WI

￥11,632

￥12,969 total

Oct 5 - Oct 6

includes taxes & fees

8.6/10 Excellent! (150 reviews)

Scenic Valley Motel

1608 Main St Lansing IA

￥9,275

￥13,533 total

Sep 28 - Sep 29

includes taxes & fees

8.2/10 Very Good! (144 reviews)

Frequently asked questions

What's the best place for a stay in Harpers Ferry?

Located 10.3 mi (16.6 km) from the heart of Harpers Ferry, Waterfront Hotel is a top choice for your stay based on our traveler data. Two other options for your visit to the area are Quality Inn & Suites Prairie Du Chien and Windsor Place Inn. See all available top hotels, or vacation rentals in Harpers Ferry.

What are some of the best vacation rentals that Harpers Ferry has to offer?

Upper Place Vacation Cottage: This vacation home rental outside of Harpers Ferry is located in a rural location and has a fireplace, a patio, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. Make the most of the garden in this rental home to help you unwind. See all vacation rentals in Harpers Ferry.

If I need to cancel my hotel reservation in Harpers Ferry, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of your scheduled arrival. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Harpers Ferry.

Where can I learn more about changing or cancelling my trip to Harpers Ferry?

To find more details about updating your trip to Harpers Ferry or cancelling it, go to https://www.expedia.com/service/.

What's the best hotel to stay close to Effigy Mounds National Monument?

Country Inn & Suites by Radisson, Prairie du Chien, WI is one of the top choices for your stay based on our traveler data, and this 3-star hotel offers free breakfast and a restaurant. It's located 2.7 mi (4.3 km) from Effigy Mounds National Monument. Other good options within a few miles include Waterfront Hotel and Cobblestone Inn & Suites - Marquette/Prairie du Chien.

What about the best place to stay close to Yellow River State Forest?

One of the top choices for your stay is Country Inn & Suites by Radisson, Prairie du Chien, WI, located 8.6 mi (13.9 km) from Yellow River State Forest, and this 3-star hotel offers free breakfast and a restaurant. Waterfront Hotel and Cobblestone Inn & Suites - Marquette/Prairie du Chien are a couple of other good options within the surrounding area.

What are some accommodations with pools in Harpers Ferry?

Quality Inn & Suites Prairie Du Chien: Offers full, an indoor pool, and free self parking. Black Bear A-Frame Waterfront Log Cabin with Hot Tub Jacuzzi and Wexford Hollow 6 BR Cabin with Swimming Pool & Hot Tub are a couple of other choices that offer an onsite pool. View all hotels with pools in Harpers Ferry.

What's the best accommodation near La Crosse Municipal Airport (LSE)?

Country Inn & Suites by Radisson, La Crosse, WI is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 1.7 mi (2.8 km) from La Crosse Municipal Airport. Other options near the airport are AmericInn by Wyndham La Crosse Riverfront-Conference Center and Motel 6 La Crosse, WI.

What is staying in Harpers Ferry like?

Visitors can enjoy all that Harpers Ferry has to offer including the restaurants and parks. In Harpers Ferry, there are 20 hotels and other accommodations to choose from. Find out more about Harpers Ferry.

What is there to see in Harpers Ferry?

Natural beauty is on display at Yellow River State Forest, Mississippi River, and Mud Hen Lake. A couple of additional sights to add to your agenda are Waukon Junction Wildlife Area and Effigy Mounds National Monument. Check out what more to see and do in Expedia's Harpers Ferry guide.

What's the weather like in Harpers Ferry?

The hottest months are usually July and August with an average temp of 69°F, while the coldest months are January and February with an average of 25°F. The snowiest months in Harpers Ferry are January, March, April, and December, with each month seeing an average of 7 inches of snowfall.

Find hotels in Harpers Ferry, IA from ￥10,969

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Harpers Ferry

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Harpers Ferry hotels

1. Northwood Inn Prairie Du Chien

2. Windsor Place Inn

3. Prairie Voyager

4. Country Inn & Suites by Radisson, Prairie du Chien

5. Scenic Valley Motel

6. AmericInn by Wyndham Prairie du Chien

7. Microtel Inn & Suites by Wyndham Prairie du Chien

8. Boarders Inn & Suites by Cobblestone Hotels – Waukon

9. Waterfront Hotel

10. Quality Inn & Suites Prairie Du Chien

11. Trickling Waters Retreat

12. Comfort Inn & Suites Marquette - Prairie du Chien

13. Sportsmen Motel

Stay near popular Harpers Ferry attractions

Yellow River State Forest

Waukon Junction Wildlife Area

Harpers Ferry City Library

Mud Hen Lake

Bluffview Park

Noble's Island

Rittenhouse Lake

Murray Island

Learn more about Harpers Ferry

Top Harpers Ferry Hotel Reviews

Waterfront Hotel

Quality Inn & Suites Prairie Du Chien

Windsor Place Inn

Comfort Inn & Suites Marquette - Prairie du Chien

Log Cabin next to the Mississippi River

Microtel Inn & Suites by Wyndham Prairie du Chien

Northwood Inn Prairie Du Chien

AmericInn by Wyndham Prairie du Chien

Romantic Get-a-Way!! 1954 Rail Road Caboose!! Relaxing Hot Tub!

More cheap stays in Harpers Ferry

Northwood Inn Prairie Du Chien

Quality Inn & Suites Prairie Du Chien

Microtel Inn & Suites by Wyndham Prairie du Chien

Comfort Inn & Suites Marquette - Prairie du Chien

Prairie Voyager

Scenic Valley Motel

Frequently asked questions

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