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Sep 13 - Sep 14
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Sep 14 - Sep 15
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Sep 18 - Sep 20
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Sep 25 - Sep 27

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Our top choices for Ayios Thomas hotels

1. Idi Hotel

Idi Hotel
Faistos
United States
Erin
¥12,185
¥13,838 total
includes taxes & fees
Sep 26 - Sep 27
Idi Hotel

2. Traditional Cretan Houses

Traditional Cretan Houses
Heraklion
Canada
Eric
¥7,336
¥8,352 total
includes taxes & fees
Oct 14 - Oct 15
Traditional Cretan Houses

3. Sofia Hotel

Sofia Hotel
Nea Alikarnassos
United Kingdom
Alan
¥11,973
¥14,522 total
includes taxes & fees
Sep 20 - Sep 21
Sofia Hotel

4. Aetovigla Traditional Guest Houses

Aetovigla Traditional Guest Houses
Malevizi
United Kingdom
Monica
¥15,059
¥17,500 total
includes taxes & fees
Oct 1 - Oct 2
Aetovigla Traditional Guest Houses

5. Marvel Deluxe Rooms

Marvel Deluxe Rooms
Nea Alikarnassos
Germany
Daniela
¥10,927
¥12,797 total
includes taxes & fees
Sep 27 - Sep 28
Marvel Deluxe Rooms

6. Nuovo Crete By Sea - Adults Only

Nuovo Crete By Sea - Adults Only
Malevizi
United Kingdom
Ifeoma
¥7,829
¥9,805 total
includes taxes & fees
Oct 14 - Oct 15
Nuovo Crete By Sea - Adults Only

7. Pasiphae Self Hotel

Pasiphae Self Hotel
Heraklion
Canada
Chang Zhong
¥5,768
¥7,458 total
includes taxes & fees
Oct 14 - Oct 15
Pasiphae Self Hotel

8. Stay 365 Heraklion Apart Hotel

Stay 365 Heraklion Apart Hotel
Heraklion
Greece
Ioannis
¥9,546
¥11,224 total
includes taxes & fees
Oct 14 - Oct 15
Stay 365 Heraklion Apart Hotel

9. Manili Boutique Suites & Villas, an SLH Hotel

Manili Boutique Suites & Villas, an SLH Hotel
Archanes-Asterousia
Denmark
Frederik
¥16,926
¥20,648 total
includes taxes & fees
Oct 14 - Oct 15
Manili Boutique Suites & Villas, an SLH Hotel

10. Alcyone Studios and Apartments

Alcyone Studios and Apartments
Heraklion
United Kingdom
Jenny
¥7,451
¥8,839 total
includes taxes & fees
Sep 29 - Sep 30
Alcyone Studios and Apartments

11. Asterion Hotel

Asterion Hotel
Nea Alikarnassos
United Kingdom
Antreas
¥11,890
¥14,427 total
includes taxes & fees
Oct 14 - Oct 15
Asterion Hotel

12. Karteros Hotel

Karteros Hotel
Hersonissos
United Kingdom
Pantelis
¥9,035
¥11,178 total
includes taxes & fees
Oct 4 - Oct 5
Karteros Hotel

13. Kronos Hotel

Kronos Hotel
Heraklion
United States
Tayfun
¥12,379
¥14,449 total
includes taxes & fees
Oct 1 - Oct 2
Kronos Hotel

14. Atrion Hotel

Atrion Hotel
Heraklion
United States
kevin
¥11,607
¥14,007 total
includes taxes & fees
Oct 7 - Oct 8
Atrion Hotel

15. Hotel REA

Hotel REA
Heraklion
United States
Henri
¥9,843
¥11,561 total
includes taxes & fees
Oct 4 - Oct 5
Hotel REA

16. Sun Boutique Hotel - Adults Only

Sun Boutique Hotel - Adults Only
Malevizi
Canada
Earl
¥5,183
¥6,258 total
includes taxes & fees
Oct 7 - Oct 8
Sun Boutique Hotel - Adults Only

17. Arolithos Traditional Cretan Village

Arolithos Traditional Cretan Village
Malevizi
United Kingdom
Kevin
¥6,448
¥9,124 total
includes taxes & fees
Sep 16 - Sep 17
Arolithos Traditional Cretan Village

18. Pela Mare Hotel

Pela Mare Hotel
Malevizi
Canada
Susan
¥6,401
¥7,644 total
includes taxes & fees
Oct 14 - Oct 15
Pela Mare Hotel

19. 3 Pines Design Living

3 Pines Design Living
Heraklion
Canada
Todd
¥14,134
¥16,447 total
includes taxes & fees
Oct 8 - Oct 9
3 Pines Design Living

20. Chapter 02 Gallery Suites

Chapter 02 Gallery Suites
Heraklion
United States
Kimberly
¥13,204
¥15,388 total
includes taxes & fees
Oct 14 - Oct 15
Chapter 02 Gallery Suites
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Top Ayios Thomas Hotel Reviews

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

10/10 Excellent
"Lovely hotel in a great central location. Breakfast was delicious with lots of specialties from Crete."
Rebecca 1-night trip
Posted 8 hours ago
GDM Megaron Historical Monument Hotel
Mirabello Hotel

Mirabello Hotel

8/10 Good
"I have stayed here before and have felt quite satisfied with my experience. It is a favorite of mine."
Nicholas 4-night trip
Posted 12 hours ago
Mirabello Hotel
Agapi Beach Resort - Premium All Inclusive

Agapi Beach Resort - Premium All Inclusive

10/10 Excellent
"Incredibly clean, all staff were exceptional. A few different pools which were all quiet and very easy to get a sunbed. Beach and sunbeds also really clean, beach bar is great for snacks and drinks. The food is the real stand out, exceeded expectations massively. Every meal was amazing. House wine/beer is pretty average, beer especially bad in the small plastic day cups. But there is a shop on site and more shops opposite which sell various Greek beers for €1 each, Nissos was really good. Great hotel, would definitely recommend."
Sam 7-night trip
Posted 19 hours ago
Agapi Beach Resort - Premium All Inclusive
Marvel Deluxe Rooms

Marvel Deluxe Rooms

8/10 Good
".."
Klee 2-night trip
Posted 2 days ago
Marvel Deluxe Rooms
Sofia Hotel

Sofia Hotel

8/10 Good
"Près de l’aéroport et de l’arrêt d’autobus à proximité 😏"
Stèven 1-night trip
Posted 2 days ago
Sofia Hotel
Ibis Styles Heraklion Central

Ibis Styles Heraklion Central

10/10 Excellent
"Staff very helpful."
David 1-night trip
Posted 3 days ago
Ibis Styles Heraklion Central
Aquila Atlantis Hotel

Aquila Atlantis Hotel

10/10 Excellent
"Hotel was beautiful and in a great location to the port, old town etc. Also had free parking which was a nice bonus. We spent a lot of time in the pool which was much needed respite from the heat. Only items to improve here was a bit of a disconnect between the day reception staff and the night reception staff re: our request for late checkout. Night staff said yes, then the next day, the day staff said no - so it made us scramble last minute to pack everything up. Otherwise - a great stay and would recommend!"
Rishi 2-night trip
Posted 5 days ago
Aquila Atlantis Hotel
Infinity City Boutique Hotel

Infinity City Boutique Hotel

10/10 Excellent
"Excellent hotel within walking distance of the port for our short stop over in Heraklion . Staff very helpful and allowed us to have early breakfast before our ferry ."
Caroline 1-night trip
Posted 7 days ago
Infinity City Boutique Hotel
Ethereal White Resort Hotel & Spa - Adults Only

Ethereal White Resort Hotel & Spa - Adults Only

10/10 Excellent
"This was a beautiful hotel in a good location. The breakfast was fantastic with lots of options, The pool on the roof was lovely at sunset as well as the roof deck café. Suggestion: it would’ve been helpful to have hooks in the bathroom for towels and hanging up a bathing suit."
Barbara 3-night trip
Posted 9 days ago
Ethereal White Resort Hotel & Spa - Adults Only

More cheap stays in Ayios Thomas

Pela Mare Hotel

Pela Mare Hotel

Agia Pelagia Malevizi Crete Island
¥6,401
¥7,644 total
Oct 14 - Oct 15
includes taxes & fees
Pela Mare Hotel
Mirabello Hotel

Mirabello Hotel

20 Theotokopoulou St Heraklion Crete Island
¥9,032
¥10,638 total
Oct 14 - Oct 15
includes taxes & fees
8.6/10 Excellent! (405 reviews)
Mirabello Hotel
Thalia Bloom Villa Apartments

Thalia Bloom Villa Apartments

Marikas Kapsi Malevizi Heraklion
¥10,358
¥12,060 total
Oct 2 - Oct 3
includes taxes & fees
9.4/10 Exceptional! (30 reviews)
Thalia Bloom Villa Apartments
Idi Hotel

Idi Hotel

Zaros Faistos Crete
¥12,185
¥13,838 total
Sep 26 - Sep 27
includes taxes & fees
9.2/10 Wonderful! (85 reviews)
Idi Hotel
El Greco Hotel

El Greco Hotel

4, Street 1821 Heraklion Crete Island
¥12,001
¥14,018 total
Sep 14 - Sep 15
includes taxes & fees
7.4/10 Good! (815 reviews)
El Greco Hotel
Kronos Hotel

Kronos Hotel

2, Sof. Venizelou Str. and M. Agarathou Heraklion Crete Island
¥12,379
¥14,449 total
Oct 1 - Oct 2
includes taxes & fees
8.8/10 Excellent! (647 reviews)
Kronos Hotel

Frequently asked questions

Where is the best place to stay in Ayios Thomas?
Located 18.5 mi (29.8 km) from the heart of Ayios Thomas, Peninsula Resort & Spa - All Inclusive is a top choice for your stay based on our traveler data. Other good choices for your trip to the area are GDM Megaron Historical Monument Hotel and Galaxy Hotel Iraklio. See all available top hotels, or vacation rentals in Ayios Thomas.
What are some of the best vacation home rentals in Ayios Thomas?
4 Living by Semavi: Visitors like this Ayios Thomas vacation home rental. It is in the city center and equipped with air-conditioning and free WiFi to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a stovetop, a microwave, and kitchenware. See all vacation rentals in Ayios Thomas.
If I need to cancel my hotel reservation in Ayios Thomas, will I receive a refund?
Yes, most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and get a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Ayios Thomas.
Where can I learn more about changing or cancelling my trip to Ayios Thomas?
To find more details about changing or cancelling your trip to Ayios Thomas, head over to our customer service page.
What is the best hotel near Nikos Kazantzakis Airport (HER)?
Sofia Hotel is a popular 3-star hotel featuring free extended parking and a restaurant. It's located a short 0.8 mi (1.2 km) from Nikos Kazantzakis Airport. Other options close to the airport are Pasiphae Hotel and Life Boutique Hotel.
What's it like to stay in Ayios Thomas?
Visitors are sure to enjoy all that Ayios Thomas has to offer. A top sight in the area is Heraklion Port. There are 2829 hotels and other accommodations in the surrounding area. Find out more about Ayios Thomas.
What are the top places to visit in Ayios Thomas?
Heraklion Port is a notable place to visit in the area. You'll also find Knossos Archaeological Site and Palace of Knossos in the area. Check out what more to see and do in Expedia's Ayios Thomas guide.
What's the weather like in Ayios Thomas?
The hottest months are usually July and August with an average temp of 77°F, while the coldest months are January and February with an average of 55°F. Average annual precipitation for Ayios Thomas is 14 inches.

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