Find Cheap Hotels in San Juan Island, WA
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Check availability on San Juan Island Cheap Hotels
Tonight
Sep 18 - Sep 19Tomorrow
Sep 19 - Sep 20This weekend
Sep 18 - Sep 20Next weekend
Sep 25 - Sep 27Our top choices for San Juan Island cheap hotels
￥15,157
￥16,772 total
includes taxes & fees
Oct 4 - Oct 5
￥26,074
￥28,850 total
includes taxes & fees
Oct 4 - Oct 5
￥25,618
￥28,346 total
includes taxes & fees
Oct 20 - Oct 21
￥24,952
￥27,609 total
includes taxes & fees
Oct 4 - Oct 5
￥35,869
￥39,690 total
includes taxes & fees
Oct 4 - Oct 5
￥36,843
￥40,658 total
includes taxes & fees
Sep 20 - Sep 21
￥22,606
￥25,014 total
includes taxes & fees
Oct 20 - Oct 21
￥33,404
￥38,703 total
includes taxes & fees
Oct 12 - Oct 13
View all properties
Top San Juan Island Hotel Reviews
The Marina Inn
10/10 Excellent
"The staff at the Marina Inn are wonderful. Excellent recommendations for dining and helpful for newcomers to the area concerning ferry schedules for the San Juan Islands. The rooms are clean and comfortable. We also experienced some local wildlife in the parking lot. There is still more to explore in the area and we did not have enough time. We will return and hopefully Marina Inn is available when we are ready to travel to Antacortes again."
Anacortes Inn
8/10 Good
"So I would give it 5 stars if not for the limited staffing of the front desk, nobody there from late ngt till 8am, hopefully u don’t have a problem overnight👎 And the fact they use Pluto TV for streaming which requires u as a guest to sign up w Pluto TV to be able to watch anything. They have zero local tv or news, only streaming."
Explore a world of travel with Expedia
- Guest Houses in Orcas
- Hotels near Western Washington University
- Hotels near Fort Worden State Park
- Shopping Hotels in Friday Harbor
- Vacation Homes in Point Roberts
- Inns in Stuart Island
- All-Inclusive Hotel Hotels in Blaine
- Luxury Hotels in Bellingham
- Oak Harbor Hotels
- Boutique Hotels in Port Townsend
- Blaine Hotels
- Hotels with Bars in Ferndale
- Farmstay in San Juan Islands
- Rv Parks in Port Angeles
- Cheap Hotels in Puget
- Resorts in Rosario
- Hostels in Northwest Washington
- Cheap Hotels in Sedro-Woolley
- Cheap Hotels in Anacortes
- Sequim Hotels
- B&B in Lummi Island
- Motels in Anacortes
- Resorts in Guemes Island
- Resorts in San Juan Islands
- Resorts & Hotels with Spas in Port Townsend
- Pet-Friendly Hotels in Oak Harbor
- Country Houses in La Conner
- Luxury Hotels in San Juan Island
- Anacortes Hotels
- Hotels with Bars in Oak Harbor
- Resorts in San Juan Island
- Hotels near Bay View State Park
- Resorts in Doe Bay
- Beach Hotels in Port Angeles
- Hotels near Lime Kiln Point State Park
- Chalets in Custer
- Fairhaven Hotels
- Inns in La Conner
- Treehouses in Point Roberts
- Hotels near Swinomish Casino
- Guest Houses in Friday Harbor
- Aparthotels in West Sound
- Resorts in Roche Harbor
- Cheap Hotels in Orcas Island
- Family Hotels in Anacortes
- Guest Houses in Anacortes
- Cheap Hotels in Port Townsend
- Coupeville Hotels
- Cheap Hotels in Whatcom County
- Historic Hotels in Roche Harbor
- Bellingham Hotels
- Holiday Park Resorts in Lummi Island
- Lodges in Orcas Island
- Family Hotels in Friday Harbor
- Hotels with Free Parking in San Juan Island
- Guest Houses in Oak Harbor
- Resorts in Orcas Island
- Lodges in Sequim
- Inns in Sequim
- Rv Parks in San Juan Islands
- Aparthotels in La Conner
- Hotels with a Pool in Dungeness
- Aparthotels in Oak Harbor
- Port Townsend Hotels
- Inns in Friday Harbor
- Resorts in Friday Harbor
- Rosario Beach Hotels
- Condo Rentals in Oak Harbor
- B&B in Anacortes
- Apartments in Oak Harbor
- Resorts & Hotels with Spas in Oak Harbor
- Inns in Bellingham
- Friday Harbor Hotels
- Inns in Orcas Island
- Cheap Hotels in Port Angeles
- Vacation Homes in San Juan Island
- Farmstay in Orcas Island
- Holiday Park Resorts in Orcas Island
- Lodges in La Conner
- Riads in Port Angeles
- Farmstay in San Juan Island
- Hotels with Free Parking in Freeland
- Hotel with a Concierge Hotels in Bellingham
- Beach Hotels in Columbia
- Inns in Port Townsend
- Lopez Island Hotels
- Apartments in Rosario Beach
- Rv Parks in Orcas Island
- Farmstay in La Conner
- Cheap Hotels in Bellingham