A harbor with multiple sailboats and a bridge in the background.

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Our top choices for Harbor Island hotels

1. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,749 reviews)
"Great place to stay"
United States
andrew
The price is ¥21,962
¥33,237 total
includes taxes & fees
Nov 8 - Nov 9
Sheraton San Diego Resort

2. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,209 reviews)
"Excellent place to stay"
United States
Amos
The price is ¥26,590
¥30,563 total
includes taxes & fees
Nov 3 - Nov 4
Hilton San Diego Airport/Harbor Island

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,714 reviews)
"Staff very courteous and clean room and great breakfast"
United States
William
The price is ¥26,361
¥30,301 total
includes taxes & fees
Nov 8 - Nov 9
Hampton Inn & Suites San Diego Airport Liberty Station

4. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
0.7 km from Harbor Island
8.8 out of 10, Excellent, (1,000 reviews)
"Such a great place to stay"
United States
Chase
The price is ¥28,539
¥32,804 total
includes taxes & fees
Nov 1 - Nov 2
TownePlace Suites by Marriott San Diego Airport/Liberty Station

5. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,690 reviews)
"Amazing place location and hotel staff were amazing."
United States
Orlyn
The price is ¥28,925
¥33,248 total
includes taxes & fees
Oct 25 - Oct 26
Homewood Suites by Hilton San Diego Airport/Liberty Station

6. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,142 reviews)
"We had a great stay!"
United States
Svenja
The price is ¥26,732
¥33,892 total
includes taxes & fees
Oct 25 - Oct 26
Humphreys Half Moon Inn

7. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,337 reviews)
"Nice stay!"
United States
Danaya
The price is ¥24,040
¥33,371 total
includes taxes & fees
Nov 8 - Nov 9
Wyndham San Diego Bayside

8. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (3,981 reviews)
"Loved the hotel!"
United States
Thania
The price is ¥23,063
¥26,509 total
includes taxes & fees
Nov 4 - Nov 5
Bay Club Hotel & Marina

9. Best Western Plus Bayside Inn

Best Western Plus Bayside Inn
3.0 star property
3.7 km from Harbor Island
9.0 out of 10, Wonderful, (1,010 reviews)
"Loved the location and pool was convenient to get to."
United States
Phyllis
The price is ¥23,607
¥27,325 total
includes taxes & fees
Oct 25 - Oct 26
Best Western Plus Bayside Inn

10. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,085 reviews)
"Love the hotel, the breakfast was good and the staff was exceptional."
United States
Patricia
The price is ¥24,174
¥27,787 total
includes taxes & fees
Nov 8 - Nov 9
Holiday Inn Express San Diego Airport - Old Town by IHG

11. Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
3.3 km from Harbor Island
8.2 out of 10, Very good, (2,794 reviews)
"Clean rooms, great breakfast"
United States
debbie
The price is ¥23,191
¥26,888 total
includes taxes & fees
Nov 8 - Nov 9
Hampton Inn San Diego-Downtown

12. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.4 km from Harbor Island
9.2 out of 10, Wonderful, (1,395 reviews)
"Very nice & very clean place to stay"
United States
Xuan
The price is ¥25,782
¥29,635 total
includes taxes & fees
Oct 14 - Oct 15
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

13. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Harbor Island
8.4 out of 10, Very good, (2,080 reviews)
"Nice room, convenient to the airport without the noise, extremely helpful staff."
United States
James
The price is ¥23,858
¥27,377 total
includes taxes & fees
Oct 21 - Oct 22
Best Western Yacht Harbor Hotel

14. The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
4 km from Harbor Island
8.8 out of 10, Excellent, (2,248 reviews)
"Clean room, great staff and a really good breakfast"
United States
Abeer
The price is ¥22,626
¥26,233 total
includes taxes & fees
Nov 8 - Nov 9
The DEXTRO Little Italy, BW Premier Collection

15. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very good, (1,387 reviews)
"Great place to stay"
United States
Chris
The price is ¥18,665
¥21,511 total
includes taxes & fees
Oct 12 - Oct 13
Crowne Plaza San Diego - Mission Valley by IHG

16. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,527 reviews)
"Nice, clean hotel for a quick stay."
United States
Kristen
The price is ¥21,013
¥24,152 total
includes taxes & fees
Oct 26 - Oct 27
Hilton Garden Inn San Diego Old Town/SeaWorld Area

17. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,211 reviews)
"Great place to stay!"
United States
Nayla
The price is ¥16,544
¥19,017 total
includes taxes & fees
Oct 14 - Oct 15
Wyndham Garden San Diego Near SeaWorld

18. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.3 km from Harbor Island
8.8 out of 10, Excellent, (1,735 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is ¥25,812
¥29,669 total
includes taxes & fees
Oct 18 - Oct 19
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

19. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
2.3 km from Harbor Island
9.0 out of 10, Wonderful, (1,636 reviews)
"This hotel is amazing. This was our 2nd time staying there and we will be back."
United States
Sarah
The price is ¥22,321
¥25,656 total
includes taxes & fees
Nov 3 - Nov 4
Best Western Plus Island Palms Hotel & Marina

20. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,005 reviews)
"The room was clean and the staff was very nice."
United States
Patricia
The price is ¥21,962
¥25,243 total
includes taxes & fees
Nov 8 - Nov 9
Holiday Inn Express San Diego - SeaWorld Area by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Harbor Island

Find the best Harbor Island areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best hotel for a stay in Harbor Island?
Based on our traveler data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.
How many hotels will I find in Harbor Island?
Book one of Expedia's 6 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.
Where can I learn more about changing or cancelling my trip to Harbor Island?
For more information about rescheduling or cancelling your trip to Harbor Island, head over to our customer service page.
What is there to do around this San Diego neighborhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Marine Corps Recruit Depot or Port of San Diego.

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