Find hotels in San Juan Islands, WA from ￥20,160
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Go beyond your typical stay in San Juan Islands
Family friendly
Check prices for these dates
Our top choices for San Juan Islands hotels
Roche Harbor Resort
Roche Harbor ResortFriday Harbor
9.2 out of 10, Wonderful, (434 reviews)
"We had a wonderful stay the room was clean and inviting "
Steve
The price is ￥42,717
￥49,496 total
includes taxes & fees
May 20 - May 21
Trumpeter Inn
Trumpeter InnFriday Harbor
10.0 out of 10, Exceptional, (257 reviews)
"Owner is wonderful and breakfast was plentiful and tasty"
Yasuhito
The price is ￥35,002
￥38,624 total
includes taxes & fees
May 19 - May 20
Outlook Inn
Outlook InnEastsound
9.2 out of 10, Wonderful, (512 reviews)
"Great location, beautiful views. Pet friendly, but be aware restaurant only pet friendly outdoor seating, which is seasonal. Food was great dinner and brunch."
Thomas
The price is ￥61,631
￥70,391 total
includes taxes & fees
May 19 - May 20
The Orca Inn
The Orca InnFriday Harbor
9.4 out of 10, Exceptional, (3 reviews)
"Everything was awesome clean small but that’s what I expected and very nice staff"
Ashley
The price is ￥23,571
￥26,081 total
includes taxes & fees
May 19 - May 20
Discovery Inn
Discovery InnFriday Harbor
10.0 out of 10, Exceptional, (6 reviews)
"The staff were great"
Christina
The price is ￥33,200
￥36,736 total
includes taxes & fees
May 19 - May 20
Snug Harbor Resort
Snug Harbor ResortFriday Harbor
9.8 out of 10, Exceptional, (512 reviews)
"We were so impressed with the property. Great accommodations nestled in a beautiful harbor. Awesome amenities as well. We will definitely be coming back!"
Casey
The price is ￥56,860
￥62,745 total
includes taxes & fees
May 31 - Jun 1
Deer Harbor Inn
Deer Harbor InnDeer Harbor
8.4 out of 10, Very Good, (205 reviews)
"Deer Harbor is Awesome! And the Deer Harbor Inn is a great place to stay! Once we had the key code for our room we found a cozy, inviting environment. We turned on the fireplace/heater and warmed it up. The bed was comfortable and the bathroom was clean and well lit. The parking was right behind the building and we could see our car from our room which was nice."
Paul
The price is ￥36,002
￥39,729 total
includes taxes & fees
May 19 - May 20
Kangaroo House B&B on Orcas Island
Kangaroo House B&B on Orcas IslandEastsound
10.0 out of 10, Exceptional, (169 reviews)
"We had a wonderful stay! The owners are amazing, the breakfast is ten out of ten, the house is charming and cozy and the town is a short walk away. Highly recommend."
robilee
The price is ￥39,836
￥43,958 total
includes taxes & fees
May 31 - Jun 1
Earthbox Inn & Spa
Earthbox Inn & SpaFriday Harbor
8.8 out of 10, Excellent, (1,001 reviews)
"Great place to stay. Friendly staff. Excellent for pet-friendly. Love the products they use in the room and sell in the lobby. Beautiful, calming place! I will be going back again. "
Jacqueline
The price is ￥34,923
￥38,642 total
includes taxes & fees
May 20 - May 21
Friday Harbor Suites
Friday Harbor SuitesFriday Harbor
8.6 out of 10, Excellent, (1,006 reviews)
"Great place! "
Todd
The price is ￥25,907
￥28,665 total
includes taxes & fees
May 25 - May 26
West Beach Resort
West Beach ResortEastsound
9.4 out of 10, Exceptional, (118 reviews)
"Pet friendly and very clean and peaceful."
Ana
The price is ￥43,495
￥47,997 total
includes taxes & fees
May 26 - May 27
Bird Rock Hotel
Bird Rock HotelFriday Harbor
8.8 out of 10, Excellent, (368 reviews)
"Very nice and helpful staff! I love the location of this hotel it is so convenient. "
XIN
The price is ￥24,605
￥27,227 total
includes taxes & fees
May 20 - May 21
Rosario Village
Rosario VillageEastsound
7.4 out of 10, Good, (108 reviews)
"The view from the balcony was wonderful and the room was clean and comfortable."
Ragan R
The price is ￥25,716
￥32,347 total
includes taxes & fees
May 21 - May 22
Friday Harbor House
Friday Harbor HouseFriday Harbor
9.6 out of 10, Exceptional, (268 reviews)
"Really great hotel
Friendly helpful staff
Good food"
Paul
The price is ￥62,718
￥69,397 total
includes taxes & fees
May 19 - May 20
Saturn's Return
Saturn's ReturnFriday Harbor
9.4 out of 10, Exceptional, (23 reviews)
"Great place to stay in San Juan island. Very quiet and tranquil, and the breakfast was amazing. "
Stanyslav
The price is ￥64,611
￥71,298 total
includes taxes & fees
Jun 2 - Jun 3
Tucker House Inn
Tucker House InnFriday Harbor
9.4 out of 10, Exceptional, (288 reviews)
"Beautiful property, wonderful staff, excellent amenities and service. Proximity to downtown and SJI brewery and ferry was big bonus. Many thx for a wonderful stay."
Kao Bin
The price is ￥32,140
￥35,564 total
includes taxes & fees
May 18 - May 19
Lopez Islander Resort
Lopez Islander ResortLopez Island
8.6 out of 10, Excellent, (378 reviews)
"Large balcony, clean bathrooms and price."
Gage
The price is ￥28,414
￥31,355 total
includes taxes & fees
May 18 - May 19
The Edenwild Boutique Inn
The Edenwild Boutique InnLopez Island
9.4 out of 10, Exceptional, (263 reviews)
"Clean room, spacious bathrooms, good water pressure and temperature, easy access to everything in town, plentiful parking"
Tristan
The price is ￥20,979
￥23,149 total
includes taxes & fees
May 20 - May 21
Quality Inn Grand Suites Bellingham
Quality Inn Grand Suites BellinghamMeridian
6.8 out of 10, (1,000 reviews)
"The room was clean, the breakfast was adequate and well managed. Staff was helpful."
Tammy
The price is ￥11,310
￥13,042 total
includes taxes & fees
May 26 - May 27
Baymont by Wyndham Bellingham
Baymont by Wyndham BellinghamMeridian
7.4 out of 10, Good, (660 reviews)
"The hotel was rather basic, and a little worn here, and there, but was extremely clean, very friendly staff, in a safe location, and the suite had an amazing Jacuzzi tub!"
Christopher
The price is ￥12,540
￥14,408 total
includes taxes & fees
May 18 - May 19
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in
Stay near popular San Juan Islands attractions
Learn more about San Juan Islands
Kayaking between forested islands reveals hidden coves and curious seals, while orcas breach offshore during whale-watching tours. Hike Mount Constitution on Orcas Island for sweeping views, then explore Friday Harbor's galleries and savor fresh-caught seafood at waterfront restaurants.
More cheap stays in San Juan Islands
The Orca Inn
770 Mullis St Friday Harbor WA
The price is ￥23,571 per night from May 19 to May 20
￥23,571
￥26,081 total
May 19 - May 20
includes taxes & fees
9.4/10 Exceptional! (3 reviews)
Hotels in San Juan Islands with star-rating
4 Star Hotels
2 properties
Explore a world of travel with Expedia
- Vacation Homes in Point Roberts
- Chalets in Custer
- Bellingham Hotels
- Resorts in Roche Harbor
- Conway Hotels
- Hotels near Fort Worden State Park
- Hotels near Olympic National Park Visitor Center
- Inns in La Conner
- Resorts in Guemes Island
- Hotels near Lime Kiln Point State Park
- Hotels with Bars in Ferndale
- Cheap Hotels in Puget
- Austin Hotels
- Cheap Hotels in Anacortes
- Inns in Orcas Island
- Pet-Friendly Hotels in Oak Harbor
- Guest Houses in Orcas
- Resorts in Orcas Island
- Motels in Anacortes
- Anacortes Hotels
- All-Inclusive Hotel Hotels in Blaine
- Farmstay in San Juan Island
- Condo Rentals in Oak Harbor
- Hotels near Western Washington University
- Hotels near Swinomish Casino
- Aparthotels in West Sound
- Luxury Hotels in San Juan Island
- Coupeville Hotels
- Hotels with Bars in Oak Harbor
- Port Angeles Hotels
- Luxury Hotels in Bellingham
- Apartments in Rosario Beach
- Holiday Park Resorts in Lummi Island
- Friday Harbor Hotels
- Guest Houses in Anacortes
- Resorts in Rosario
- Farmstay in La Conner
- Hostels in Northwest Washington
- Cheap Hotels in Bellingham
- Mount Vernon Hotels
- Rv Parks in San Juan Islands
- Freeland Hotels
- Lopez Island Hotels
- Resorts in Doe Bay
- Family Hotels in Anacortes
- Treehouses in Point Roberts
- Resorts in Friday Harbor
- Hotels with Free Parking in San Juan Island
- Farmstay in Orcas Island
- Beach Hotels in Columbia
- Lodges in Orcas Island
- Sequim Hotels
- Holiday Park Resorts in Orcas Island
- Guest Houses in Friday Harbor
- Resorts in San Juan Islands
- Hotels near Port of Port Angeles
- Rosario Beach Hotels
- Rv Parks in Orcas Island
- Farmstay in San Juan Islands
- Aparthotels in La Conner
- Port Townsend Hotels
- Aparthotels in Oak Harbor
- Fairhaven Hotels
- Oak Harbor Hotels
- Family Hotels in Friday Harbor
- Country Houses in La Conner
- Smokey Point Hotels
- Inns in Bellingham
- Apartments in Oak Harbor
- Blaine Hotels
- Cheap Hotels in Orcas Island
- B&B in Lummi Island
- Resorts in San Juan Island
- B&B in Anacortes
- Guest Houses in Oak Harbor
- Hotels near Cama Beach State Park
- Shopping Hotels in Friday Harbor
- Vacation Homes in San Juan Island
- Hotel with a Concierge Hotels in Bellingham
- Inns in Stuart Island
- Resorts & Hotels with Spas in Oak Harbor
- Hotels near Bay View State Park
- Historic Hotels in Roche Harbor
- Inns in Friday Harbor
- Hotels near North Cascades National Park Complex Headquarters
- Town Houses in Burlington
- Hotels near Angel Of The Winds Casino Resort
- Lodges in La Conner
- Hostels in Burlington
- Cheap Hotels in Whatcom County
