Find hotels near Nagasaki Penguin Aquarium, Nagasaki from ¥6,999

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Nagasaki Penguin Aquarium hotels

Coruscant Hotel Nagasaki Station 3

Coruscant Hotel Nagasaki Station 3
2.5 star property
6.9 km from Nagasaki Penguin Aquarium
10.0 out of 10, Exceptional, (7)
"房間很大,接待櫃檯親切,很乾靜,夜晚也很安靜"
Taiwan
WU
The price is ¥11,629
¥12,792 total
Jan 9 - Jan 10, 2026
Coruscant Hotel Nagasaki Station 3

Hotel Indigo Nagasaki Glover Street by IHG

Hotel Indigo Nagasaki Glover Street by IHG
4.5 star property
8 km from Nagasaki Penguin Aquarium
10.0 out of 10, Exceptional, (26)
"The hotel is lovely , attractive shared spaces and rooms with great views over the harbour ."
United Kingdom
Susan
The price is ¥23,813
¥29,600 total
Jan 25 - Jan 26, 2026
Hotel Indigo Nagasaki Glover Street by IHG

Nagasaki Marriott Hotel

Nagasaki Marriott Hotel
5.0 star property
7.1 km from Nagasaki Penguin Aquarium
9.6 out of 10, Exceptional, (195)
"Room was spotless and beautiful We wished that breakfast was included"
United States
andrea
The price is ¥17,000
¥22,505 total
Jan 7 - Jan 8, 2026
Nagasaki Marriott Hotel

Dormy Inn Nagasakiekimae Hot Springs

Dormy Inn Nagasakiekimae Hot Springs
3.0 star property
7 km from Nagasaki Penguin Aquarium
9.4 out of 10, Exceptional, (807)
"Close to the transit station and nice Japanese business hotel."
United States
Hannah
The price is ¥8,365
¥9,274 total
Jan 4 - Jan 5, 2026
Dormy Inn Nagasakiekimae Hot Springs

THE GLOBAL VIEW Nagasaki

THE GLOBAL VIEW Nagasaki
4.0 star property
7.3 km from Nagasaki Penguin Aquarium
9.4 out of 10, Exceptional, (477)
"Great location. Walking distance to stadium and station. Very friendly and accommodating staff. Would stay there again."
United States
Sheryl
The price is ¥13,091
¥14,400 total
Jan 9 - Jan 10, 2026
THE GLOBAL VIEW Nagasaki

Hilton Nagasaki

Hilton Nagasaki
4.0 star property
7.4 km from Nagasaki Penguin Aquarium
9.4 out of 10, Exceptional, (448)
"Great staff"
Hong Kong SAR China
Alex Chee Bun
The price is ¥19,382
¥21,320 total
Jan 5 - Jan 6, 2026
Hilton Nagasaki

Hotel H2 Nagasaki

Hotel H2 Nagasaki
3.0 star property
6.8 km from Nagasaki Penguin Aquarium
9.2 out of 10, Wonderful, (486)
"Exquisite. Conveniently located for easy access to shopping, entertainment, and transportation. Looking for a place to relax? Look no further."
United States
cyleon
The price is ¥7,118
¥7,909 total
Jan 12 - Jan 13, 2026
Hotel H2 Nagasaki

FAV LUX NAGASAKI

FAV LUX NAGASAKI
3.5 star property
7.5 km from Nagasaki Penguin Aquarium
9.4 out of 10, Exceptional, (272)
"Value for money… beautiful and comfortable roomz"
Singapore
Tan lee hiang
The price is ¥8,914
¥9,847 total
Jan 13 - Jan 14, 2026
FAV LUX NAGASAKI

Oyado Kinokuniya Togiya Machi Harimaya Kado Kura

Oyado Kinokuniya Togiya Machi Harimaya Kado Kura
3.0 star property
6.3 km from Nagasaki Penguin Aquarium
9.2 out of 10, Wonderful, (12)
"快適に過ごせるように という気持ちを感じました。ありがとうございました。"
Japan
Hiroshi
The price is ¥14,250
¥20,750 total
Jan 5 - Jan 6, 2026
Oyado Kinokuniya Togiya Machi Harimaya Kado Kura

Oyado Kinokuniya Maruyama Machi

Oyado Kinokuniya Maruyama Machi
3.0 star property
6.5 km from Nagasaki Penguin Aquarium
9.2 out of 10, Wonderful, (9)
"We stayed here for 2 nights to explore the main tourist attractions in Nagasaki. Only a 15 minute drive to the Mountain view and a short walk to Chinatown, Dutch slopes and the Glover garden. The location was great. Even the carpark close by were cheap so having a car wasn’t an issue. The place was cosey and clean and it fit me and my 3 family members comfortably. All the usual were provided so we were well looked after. I would recommend this place to anyone who is coming for a quick stop in...
Australia
Abertillery
The price is ¥13,909
¥20,800 total
Jan 4 - Jan 5, 2026
Oyado Kinokuniya Maruyama Machi

Richmond Hotel Nagasaki Shianbashi

Richmond Hotel Nagasaki Shianbashi
3.0 star property
6.5 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (511)
"Morning buffet is the one I recommend trying. Enjoy many Nagasaki local foods. "
United States
NISHIKAWA
The price is ¥6,363
¥6,999 total
Jan 4 - Jan 5, 2026
Richmond Hotel Nagasaki Shianbashi

JR KYUSHU HOTEL Nagasaki

JR KYUSHU HOTEL Nagasaki
3.5 star property
7.2 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (621)
"Clean room, very good location and helpful staff."
Canada
Ethel
The price is ¥6,943
¥7,696 total
Jan 1 - Jan 2, 2026
JR KYUSHU HOTEL Nagasaki

Candeo Hotels Nagasaki Shinchi Chinatown

Candeo Hotels Nagasaki Shinchi Chinatown
3.0 star property
Nagasaki Chinatown, 6.9 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (729)
"Room was clean, enjoyed the sitting area where I could lay back with a book and relax. The outdoor public bath was a big plus especially during the winter weather."
Singapore
Jason Kin Cheung
The price is ¥10,670
¥11,842 total
Jan 4 - Jan 5, 2026
Candeo Hotels Nagasaki Shinchi Chinatown

STADIUM CITY HOTEL NAGASAKI

STADIUM CITY HOTEL NAGASAKI
4.0 star property
7.7 km from Nagasaki Penguin Aquarium
9.2 out of 10, Wonderful, (128)
"Fantastic property and friendly, respectful staff one of the best hotels I’ve ever stayed in for the price "
Canada
Kian
The price is ¥12,254
¥13,886 total
Jan 8 - Jan 9, 2026
STADIUM CITY HOTEL NAGASAKI

Oyado Kinokuniya Ginya Machi 2

Oyado Kinokuniya Ginya Machi 2
2.5 star property
6.3 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (12)
"First location. For me the location is perfect. Small side street that is so quiet, you can't believe you are in a city. Close to temples, shopping and restaurants that are literally one minute away. When you get the code and enter the building it has this quirky charm that makes it so appealing. The room/unit was huge, at least he one that I stayed in. Beautiful wood and tatami matted rooms, full kitchen, separate bathroom and shower. Great futons to sleep on. A true Japanese experience. I...
Canada
Thomas
The price is ¥14,939
¥21,383 total
Jan 4 - Jan 5, 2026
Oyado Kinokuniya Ginya Machi 2

Nagasaki Koyotei

Nagasaki Koyotei
3.0 star property
6.6 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (49)
"Place was great for a traditional Japanese experience. Some instructions in English for when to wear the shoes and robes, and how to put the beds together would be helpful."
United States
Paula
The price is ¥22,718
¥25,123 total
Jan 8 - Jan 9, 2026
Nagasaki Koyotei

STATIONHOTEL NAGASAKI SUWA

STATIONHOTEL NAGASAKI SUWA
3.0 star property
5.9 km from Nagasaki Penguin Aquarium
8.8 out of 10, Excellent, (117)
"Nice place for the price paid."
United Kingdom
Inga
The price is ¥6,468
¥7,163 total
Jan 8 - Jan 9, 2026
STATIONHOTEL NAGASAKI SUWA

Restay Nagasaki Club - Adults Only

Restay Nagasaki Club - Adults Only
3.0 star property
5.9 km from Nagasaki Penguin Aquarium
8.8 out of 10, Excellent, (8)
"窮遊首選,間房比睇相細"
Taiwan
Anonymous traveler
The price is ¥7,864
¥8,709 total
Jan 8 - Jan 9, 2026
Restay Nagasaki Club - Adults Only

Oyado Kinokuniya Daikoku Machi

Oyado Kinokuniya Daikoku Machi
2.5 star property
7 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (99)
"Place was pleasant and spacious"
Canada
Xavier
The price is ¥7,946
¥15,657 total
Jan 8 - Jan 9, 2026
Oyado Kinokuniya Daikoku Machi

Route - Hostel

Route - Hostel
2.0 star property
7 km from Nagasaki Penguin Aquarium
9.0 out of 10, Wonderful, (76)
"One of my favorite hostels Ive stayed in Japan! You stay right above their cafe, which is very close to Nagasaki Station."
United States
STEPHEN
The price is ¥6,619
¥7,346 total
Dec 29 - Dec 30
Route - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Nagasaki Penguin Aquarium Hotel Reviews

Hotels near other Nagasaki Penguin Aquarium attractions

Frequently asked questions

What's the area like around Nagasaki Penguin Aquarium?
Nagasaki Penguin Aquarium is located in an area of Nagasaki that travelers like for its Chinatown and waterfront. You'll find 124 hotels and other accommodations within a few miles for a convenient home base.
What's the best hotel to stay close to Nagasaki Penguin Aquarium?
JR KYUSHU HOTEL Nagasaki is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and soaking tubs. It's located 4.5 mi (7.2 km) from Nagasaki Penguin Aquarium. Other good choices within 5 miles include STADIUM CITY HOTEL NAGASAKI and Hotel Forza Nagasaki.
How many hotels are there near Nagasaki Penguin Aquarium?
Expedia has 124 hotels and other accommodations a few miles from Nagasaki Penguin Aquarium.
If I need to cancel the hotel reservation for my stay near Nagasaki Penguin Aquarium, will I receive a refund?
Yes! The majority of room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which often is within 24-48 hours of the scheduled arrival. If you have a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Put your dates in and click on "Search", then filter by "fully refundable" to get the best deals available near Nagasaki Penguin Aquarium.
Where can I learn more about changing or cancelling my trip in the area near Nagasaki Penguin Aquarium?
For more information about picking new dates or cancelling your stay near Nagasaki Penguin Aquarium, go to https://www.expedia.com/service/.
What can I see and do near Nagasaki Penguin Aquarium?
Study the collections at Twenty-Six Martyrs Museum and Monument, Nagasaki Prefectural Art Museum, or Gunkanjima Digital Museum. Explore notable local landmarks like Megane Bridge, Nagasaki Dejima, and Confucius Shrine. Spend some time wandering around Glover Garden, Nagasaki Seaside Park, and Nabekanmuriyama Park.

Explore a world of travel with Expedia