Find Boutique Hotels in Nagasaki

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on Nagasaki Boutique Hotels

No exact matches found, but these alternatives could be just right

Recommended hotels in Nagasaki

Hotel Indigo Nagasaki Glover Street by IHG

4.5 star property
Nagasaki
10.0 out of 10, Exceptional, (25)
"The hotel is lovely , attractive shared spaces and rooms with great views over the harbour ."
United Kingdom
Susan
The price is ¥23,813
¥29,600 total
Jan 8 - Jan 9, 2026
Hotel Indigo Nagasaki Glover Street by IHG

JR KYUSHU HOTEL Nagasaki

3.5 star property
Nagasaki
9.0 out of 10, Wonderful, (604)
"Clean room, very good location and helpful staff."
Canada
Ethel
The price is ¥7,110
¥7,863 total
Jan 5 - Jan 6, 2026
JR KYUSHU HOTEL Nagasaki

i+Land nagasaki

3.5 star property
Nagasaki
9.2 out of 10, Wonderful, (541)
"Good location for loafing "
Canada
Ronnie
The price is ¥21,764
¥26,634 total
Jan 7 - Jan 8, 2026
i+Land nagasaki

Hilton Nagasaki

4.0 star property
Nagasaki
9.4 out of 10, Exceptional, (442)
"Everything was 5 stars. Great property and staff"
United States
Darren
The price is ¥20,864
¥22,950 total
Dec 17 - Dec 18
Hilton Nagasaki

Nagasaki Marriott Hotel

5.0 star property
Nagasaki
9.6 out of 10, Exceptional, (189)
"Room was spotless and beautiful We wished that breakfast was included"
United States
andrea
The price is ¥16,065
¥21,323 total
Jan 7 - Jan 8, 2026
Nagasaki Marriott Hotel

Luke Plaza Hotel

3.0 star property
Nagasaki
9.0 out of 10, Wonderful, (102)
"Very friedly staff, spacious room. Excellent view breakfast room"
United States
Ruoyu
The price is ¥10,156
¥11,172 total
Jan 9 - Jan 10, 2026
Luke Plaza Hotel

Hotel Concerto Nagasaki

3.5 star property
Nagasaki
9.0 out of 10, Wonderful, (170)
"totally recommend it, premium quality, friendly staff and one of the best room i had in japan."
United States
Antille
The price is ¥13,304
¥14,634 total
Dec 12 - Dec 13
Hotel Concerto Nagasaki

Garden Terrace Nagasaki Hotels & Resorts

4.0 star property
Nagasaki
9.2 out of 10, Wonderful, (90)
"Beautiful hotel with good choices of restaurants "
Hong Kong SAR China
Ka Nin
The price is ¥35,713
¥39,284 total
Jan 8 - Jan 9, 2026
Garden Terrace Nagasaki Hotels & Resorts

Restay Nagasaki Club - Adults Only

3.0 star property
Nagasaki
8.8 out of 10, Excellent, (8)
"窮遊首選,間房比睇相細"
Taiwan
Anonymous traveler
The price is ¥8,033
¥8,878 total
Dec 10 - Dec 11
Restay Nagasaki Club - Adults Only

Dormy Inn Nagasakiekimae Hot Springs

3.0 star property
Nagasaki
9.4 out of 10, Exceptional, (797)
"Close to the transit station and nice Japanese business hotel."
United States
Hannah
The price is ¥8,546
¥9,455 total
Dec 21 - Dec 22
Dormy Inn Nagasakiekimae Hot Springs
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Nagasaki Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What's there to see and do in Nagasaki?
The shopping, museums, and historic landmarks are just some of the things to enjoy while you're in the area. Attractions and activities to experience around Nagasaki include Nagasaki City Office, Nagasaki City Library, and Megane Bridge. You might also like to explore more of the area and take in additional sights like Suwa Shrine, Twenty-Six Martyrs Museum and Monument, and Nagasaki Prefectural Art Museum while you're here.
What kind of weather should I plan for when I travel to Nagasaki?
Getting an idea of what to expect from the weather in Nagasaki will help you enjoy your stay to the fullest. The hottest months are usually August and July with an average temp of 77°F, while the coldest months are January and February with an average of 50°F. The rainiest months in Nagasaki are June, July, August, and May, with each month seeing an average of 15 inches of rainfall.
What's the best way to get to my boutique hotel in Nagasaki?
You have a few options for traveling to and around Nagasaki. The closest major airport is Nagasaki Airport (NGS), which is located 11.6 mi (18.7 km) from the heart of the city. To explore the surrounding area, ride one of the trains from Nagasaki Station or Urakami station.