Mission Bay Vacations

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Price found within the past 48 hours. Click for updated prices.
  • Jul 9 - Jul 12

    The Sofia Hotel + Flight

    Downtown San Diego
    3 nights
    3.5 star property
    8.6/10 - Excellent (2,063 reviews)
    "beautiful rooms and great location."
    Reviewed May 19, 2026
    Roundtrip Tokyo (HND) - San Diego (SAN)
    HND - SAN2 stops SAN - HND2 stops
    ¥328,316
    ¥267,658
    per traveler
    found 4 hours ago
    The Sofia Hotel
  • Jun 25 - Jun 30

    Margaritaville Hotel San Diego Gaslamp Quarter + Flight

    Downtown San Diego
    5 nights
    4.0 star property
    9.0/10 - Wonderful (1,358 reviews)
    "Clean room"
    Reviewed May 18, 2026
    Roundtrip Tokyo (NRT) - San Diego (SAN)
    NRT - SAN2 stops SAN - NRT2 stops
    ¥415,674
    ¥312,936
    per traveler
    found 1 day ago
    Margaritaville Hotel San Diego Gaslamp Quarter
  • Jun 25 - Jun 30

    Pendry San Diego + Flight

    Downtown San Diego
    5 nights
    5.0 star property
    9.2/10 - Wonderful (1,009 reviews)
    "Cathy In concierge was exceptional."
    Reviewed May 11, 2026
    Roundtrip Tokyo (NRT) - San Diego (SAN)
    NRT - SAN2 stops SAN - NRT2 stops
    ¥699,116
    ¥544,119
    per traveler
    found 1 day ago
    Pendry San Diego
  • Jun 25 - Jun 30

    Shore House at The Del, LXR Hotels & Resorts + Flight

    Historic Downtown Coronado
    5 nights
    5.0 star property
    9.2/10 - Wonderful (149 reviews)
    "Perfect view of the ocean! The room was very clean! The grounds are absolutely beautiful!"
    Reviewed May 15, 2026
    Roundtrip Tokyo (NRT) - San Diego (SAN)
    NRT - SAN2 stops SAN - NRT2 stops
    ¥688,983
    ¥549,677
    per traveler
    found 1 day ago
    Shore House at The Del, LXR Hotels & Resorts
  • Jun 25 - Jun 30

    Hard Rock Hotel San Diego + Flight

    Downtown San Diego
    5 nights
    4.0 star property
    9.0/10 - Wonderful (3,688 reviews)
    "The front desk clerk neglected to inform us about the $150 per night incidental charges. It was a shock after we saw the charge getting to our room. There was an adult massager for sale with the mini bar that created an awkward situation with our young children! The room was very nice and the location to Petco Park is phenomenal."
    Reviewed May 18, 2026
    Roundtrip Tokyo (NRT) - San Diego (SAN)
    NRT - SAN2 stops SAN - NRT2 stops
    ¥401,774
    ¥331,048
    per traveler
    found 1 day ago
    Hard Rock Hotel San Diego

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most. Learn more about Mission Bay

Mission Bay Hotel Deals

Paradise Point Resort & Spa

Paradise Point Resort & Spa

4 out of 5
1404 Vacation Rd San Diego CA
Fully refundableReserve now, pay when you stay
The price is ¥34,553 per night from May 25 to May 26
¥34,553
¥48,122 total
May 25 - May 26
includes taxes & fees
8.8/10 Excellent! (2,599 reviews)
"Private beach"

Reviewed on May 19, 2026

Paradise Point Resort & Spa
The Dana on Mission Bay

The Dana on Mission Bay

3.5 out of 5
1710 W Mission Bay Dr San Diego CA
Fully refundableReserve now, pay when you stay
The price is ¥31,607 per night from May 25 to May 26
¥31,607
¥40,895 total
May 25 - May 26
includes taxes & fees
9/10 Wonderful! (4,362 reviews)
"Housekeeping was wonderful. The staff was extremely helpful and very prompt with any request. The pool area and jacuzzi were very clean. The breakfast in the restaurant was excellent and the service was wonderful."

Reviewed on May 19, 2026

The Dana on Mission Bay
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

4 out of 5
1441 Quivira Rd San Diego CA
Fully refundableReserve now, pay when you stay
The price is ¥26,842 per night from May 20 to May 21
¥26,842
¥39,257 total
May 20 - May 21
includes taxes & fees
8.4/10 Very Good! (1,647 reviews)
"The only place I will stay at in San diego! Clean hotel, great amenities, wonderful staff."

Reviewed on May 19, 2026

Hyatt Regency Mission Bay Spa and Marina
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Discover the most popular places to visit in Mission Bay

Things to do

* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.