Find hotels in Harbor Island, San Diego from ¥15,106

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Harbor Island hotels

1. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,807 reviews)
"Comfortable stay with beautiful views"
United States
Solair
The price is ¥18,269
¥28,965 total
includes taxes & fees
Nov 25 - Nov 26
Sheraton San Diego Resort

2. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,219 reviews)
"Nice view of the harbor"
United States
Alan
The price is ¥24,408
¥28,056 total
includes taxes & fees
Nov 29 - Nov 30
Hilton San Diego Airport/Harbor Island

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,739 reviews)
"Very clean property and helpful, friendly staff."
United States
Dean
The price is ¥24,918
¥28,641 total
includes taxes & fees
Nov 22 - Nov 23
Hampton Inn & Suites San Diego Airport Liberty Station

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,707 reviews)
"Very pleasant stay."
United States
Alicia
The price is ¥27,507
¥31,618 total
includes taxes & fees
Nov 17 - Nov 18
Homewood Suites by Hilton San Diego Airport/Liberty Station

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,161 reviews)
"Best place to stay in San Diego and I will be coming back"
United States
Ronald
The price is ¥24,406
¥31,224 total
includes taxes & fees
Nov 23 - Nov 24
Humphreys Half Moon Inn

6. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,373 reviews)
"The view was beautiful"
United States
Paul
The price is ¥22,088
¥31,091 total
includes taxes & fees
Nov 25 - Nov 26
Wyndham San Diego Bayside

7. Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego
4.0 star property
Marina District, 3.9 km from Harbor Island
9.0 out of 10, Wonderful, (2,890 reviews)
"Love this hotel super nice"
United States
Sarah
The price is ¥28,207
¥41,286 total
includes taxes & fees
Nov 25 - Nov 26
Manchester Grand Hyatt San Diego

8. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,100 reviews)
"Great family hotel. Simple and clean yummy breakfast inexpensive and perfect for our short stay in sd"
United States
Alejandra
The price is ¥21,419
¥24,620 total
includes taxes & fees
Nov 15 - Nov 16
Holiday Inn Express San Diego Airport - Old Town by IHG

9. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (4,061 reviews)
"Beautiful, clean hotel and friendly staff!!"
United States
Robin
The price is ¥23,954
¥27,534 total
includes taxes & fees
Nov 17 - Nov 18
Bay Club Hotel & Marina

10. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
2.3 km from Harbor Island
9.0 out of 10, Wonderful, (1,639 reviews)
"Excellent location, great amenities and easy parking close to room."
Australia
Adam
The price is ¥20,071
¥23,070 total
includes taxes & fees
Nov 23 - Nov 24
Best Western Plus Island Palms Hotel & Marina

11. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.4 km from Harbor Island
9.2 out of 10, Wonderful, (1,480 reviews)
"The breakfast was amazing!"
United States
David
The price is ¥23,962
¥27,544 total
includes taxes & fees
Nov 17 - Nov 18
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

12. The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
4 km from Harbor Island
8.8 out of 10, Excellent, (2,362 reviews)
"Really enjoyed my stay!"
United States
Kelly
The price is ¥19,946
¥23,126 total
includes taxes & fees
Nov 17 - Nov 18
The DEXTRO Little Italy, BW Premier Collection

13. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very good, (1,476 reviews)
"Had a good stay"
United States
Yesenia
The price is ¥18,067
¥20,826 total
includes taxes & fees
Nov 23 - Nov 24
Crowne Plaza San Diego - Mission Valley by IHG

14. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,176 reviews)
"great stay"
United States
Sarah
The price is ¥15,106
¥17,364 total
includes taxes & fees
Nov 17 - Nov 18
Wyndham Garden San Diego Near SeaWorld

15. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
4.3 km from Harbor Island
8.0 out of 10, Very good, (3,103 reviews)
"Clean and spacious room, good breakfast, nice staff."
United States
Antonia
The price is ¥18,808
¥21,617 total
includes taxes & fees
Nov 8 - Nov 9
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

16. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.3 km from Harbor Island
8.8 out of 10, Excellent, (1,752 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is ¥22,362
¥25,704 total
includes taxes & fees
Dec 1 - Dec 2
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

17. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 2.9 km from Harbor Island
8.2 out of 10, Very good, (2,076 reviews)
"A great stay and very close to the airport for those frequent trips"
United States
Ernesto
The price is ¥17,377
¥19,974 total
includes taxes & fees
Nov 29 - Nov 30
Comfort Inn San Diego Old Town

18. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,008 reviews)
"Great place to rest your head"
United States
Kenneth
The price is ¥20,001
¥22,990 total
includes taxes & fees
Nov 15 - Nov 16
Holiday Inn Express San Diego - SeaWorld Area by IHG

19. Hilton Garden Inn San Diego Downtown/Bayside

Hilton Garden Inn San Diego Downtown/Bayside
3.5 star property
3.2 km from Harbor Island
8.6 out of 10, Excellent, (1,459 reviews)
"Great place to stay at"
United States
Luis
The price is ¥25,935
¥30,070 total
includes taxes & fees
Nov 15 - Nov 16
Hilton Garden Inn San Diego Downtown/Bayside

20. Best Western Plus Bayside Inn

Best Western Plus Bayside Inn
3.0 star property
3.7 km from Harbor Island
9.0 out of 10, Wonderful, (1,033 reviews)
"Nice spot to stay downtown"
United States
Ricardo
The price is ¥22,601
¥26,160 total
includes taxes & fees
Nov 17 - Nov 18
Best Western Plus Bayside Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels in Harbor Island

Property
Star rating
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
A balcony with wicker furniture overlooking a marina and a coastal cityscape.
Sheraton San Diego Resort
4.0 star property
8.6
Excellent
3,807 reviews
View
An outdoor patio with string lights, tables, chairs, and a bar area with bottles.
Hilton San Diego Airport/Harbor Island
3.5 star property
8.8
Excellent
1,219 reviews
View
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,739 reviews
View
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,707 reviews
View
A hotel entrance with a stone archway, a reception desk, and potted plants.
Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
9.2
Wonderful
1,100 reviews
View

Where to stay in Harbor Island

Find the best Harbor Island areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Frequently Asked Questions

What's it like in Harbor Island?

Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best hotel for a stay in Harbor Island?

Based on our traveler data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.

How many hotels will I find in Harbor Island?

Book one of Expedia's 6 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.

Where can I learn more about changing or cancelling my trip to Harbor Island?

For more information about rescheduling or cancelling your trip to Harbor Island, head over to our customer service page.

What is there to do around this San Diego neighborhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Marine Corps Recruit Depot or Port of San Diego.

Explore a world of travel with Expedia