A harbor with multiple sailboats and a bridge in the background.

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Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,208 reviews)
"Excellent place to stay"
United States
Amos
The price is ¥25,887
¥29,756 total
includes taxes & fees
Nov 8 - Nov 9
Hilton San Diego Airport/Harbor Island

2. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,759 reviews)
"Great place to stay"
United States
andrew
The price is ¥22,005
¥33,300 total
includes taxes & fees
Nov 8 - Nov 9
Sheraton San Diego Resort

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,731 reviews)
"Love to stay here, very nice accommodations, quiet, great service, the airport shuttle very convenient."
United States
MANUEL
The price is ¥25,887
¥29,755 total
includes taxes & fees
Nov 9 - Nov 10
Hampton Inn & Suites San Diego Airport Liberty Station

4. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
0.7 km from Harbor Island
8.8 out of 10, Excellent, (1,007 reviews)
"Such a great place to stay"
United States
Chase
The price is ¥27,884
¥32,051 total
includes taxes & fees
Nov 8 - Nov 9
TownePlace Suites by Marriott San Diego Airport/Liberty Station

5. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,708 reviews)
"Amazing place location and hotel staff were amazing."
United States
Orlyn
The price is ¥29,009
¥33,345 total
includes taxes & fees
Oct 25 - Oct 26
Homewood Suites by Hilton San Diego Airport/Liberty Station

6. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,138 reviews)
"We had a great stay!"
United States
Svenja
The price is ¥29,983
¥37,638 total
includes taxes & fees
Nov 9 - Nov 10
Humphreys Half Moon Inn

7. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,088 reviews)
"Love the hotel, the breakfast was good and the staff was exceptional."
United States
Patricia
The price is ¥24,272
¥27,899 total
includes taxes & fees
Oct 25 - Oct 26
Holiday Inn Express San Diego Airport - Old Town by IHG

8. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.8 km from Harbor Island
8.4 out of 10, Very good, (2,096 reviews)
"nice stay"
United States
Falizity
The price is ¥18,085
¥20,753 total
includes taxes & fees
Nov 8 - Nov 9
Best Western Yacht Harbor Hotel

9. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (4,010 reviews)
"Great location and friendly staff."
United States
Thuan
The price is ¥24,700
¥28,390 total
includes taxes & fees
Oct 27 - Oct 28
Bay Club Hotel & Marina

10. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,326 reviews)
The price is ¥24,087
¥33,436 total
includes taxes & fees
Nov 8 - Nov 9
Wyndham San Diego Bayside

11. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.4 km from Harbor Island
9.2 out of 10, Wonderful, (1,414 reviews)
"Clean, convenient and the beds were super comfy!"
United States
Tammy
The price is ¥26,834
¥30,845 total
includes taxes & fees
Oct 25 - Oct 26
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

12. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
2.3 km from Harbor Island
9.0 out of 10, Wonderful, (1,619 reviews)
"This hotel is amazing. This was our 2nd time staying there and we will be back."
United States
Sarah
The price is ¥22,114
¥25,420 total
includes taxes & fees
Nov 9 - Nov 10
Best Western Plus Island Palms Hotel & Marina

13. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very good, (1,403 reviews)
The price is ¥18,720
¥21,576 total
includes taxes & fees
Oct 29 - Oct 30
Crowne Plaza San Diego - Mission Valley by IHG

14. The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
4 km from Harbor Island
8.8 out of 10, Excellent, (2,275 reviews)
"Clean room, great staff and a really good breakfast"
United States
Abeer
The price is ¥23,936
¥27,753 total
includes taxes & fees
Nov 11 - Nov 12
The DEXTRO Little Italy, BW Premier Collection

15. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,206 reviews)
"Nice place"
United States
Virginia
The price is ¥16,577
¥19,053 total
includes taxes & fees
Nov 11 - Nov 12
Wyndham Garden San Diego Near SeaWorld

16. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.8 km from Harbor Island
8.8 out of 10, Excellent, (1,533 reviews)
"Nice, clean hotel for a quick stay."
United States
Kristen
The price is ¥20,227
¥23,250 total
includes taxes & fees
Nov 9 - Nov 10
Hilton Garden Inn San Diego Old Town/SeaWorld Area

17. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
3.7 km from Harbor Island
9.0 out of 10, Wonderful, (1,010 reviews)
"Very nice cloae to everything stores, restaurants airport."
United States
Regina
The price is ¥22,686
¥26,078 total
includes taxes & fees
Nov 10 - Nov 11
Holiday Inn Express San Diego - SeaWorld Area by IHG

18. Hampton Inn San Diego-Downtown

Hampton Inn San Diego-Downtown
2.5 star property
3.4 km from Harbor Island
8.2 out of 10, Very good, (2,797 reviews)
"Clean rooms, great breakfast"
United States
debbie
The price is ¥23,237
¥26,941 total
includes taxes & fees
Nov 8 - Nov 9
Hampton Inn San Diego-Downtown

19. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.3 km from Harbor Island
8.8 out of 10, Excellent, (1,738 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is ¥21,440
¥24,644 total
includes taxes & fees
Nov 8 - Nov 9
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

20. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
4.3 km from Harbor Island
8.0 out of 10, Very good, (3,074 reviews)
"Clean and spacious room, good breakfast, nice staff."
United States
Antonia
The price is ¥21,701
¥24,943 total
includes taxes & fees
Nov 11 - Nov 12
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Harbor Island

Find the best Harbor Island areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best hotel for a stay in Harbor Island?
Based on our traveler data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.
How many hotels will I find in Harbor Island?
Book one of Expedia's 6 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.
Where can I learn more about changing or cancelling my trip to Harbor Island?
For more information about rescheduling or cancelling your trip to Harbor Island, head over to our customer service page.
What is there to do around this San Diego neighborhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Marine Corps Recruit Depot or Port of San Diego.

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