Photo by Tomohisa Aoyagi

Find Boutique Hotels in Yonaguni

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on Yonaguni Boutique Hotels

Top Yonaguni Boutique Hotels

No exact matches found, but these alternatives could be just right

Recommended hotels in Yonaguni

MUMBU STAY Nantahama Beach

3.0 star property
Yonaguni
8.6 out of 10, Excellent, (27)
"The staff were very kind and accommodating. I was glad I could enjoy dinner even with a same-day reservation."
United States
KAKERU
The price is ¥18,655
¥20,520 total
Dec 18 - Dec 19
MUMBU STAY Nantahama Beach

Yonaguni-mumbu Airport Hotel

3.0 star property
Yonaguni
7.6 out of 10, Good, (24)
"綺麗でした。 LINEでいろいろな質問も出来て利用しやすかった。 ただドアが歪んでて鍵が閉まらない、 枕が汗臭かった。 虫が多いので窓の開けっ放しはやめてと説明があったのに部屋にチェックインした時には窓開いていて部屋に虫がいた。 離島なのでこんなもんかと思えばなんて事ないです。 立地もいいです。 また利用します。"
Japan
Makoto
The price is ¥14,276
¥15,779 total
Jan 8 - Jan 9, 2026
Yonaguni-mumbu Airport Hotel

Yonaguni Hotel Mumbu Higawahama

3.0 star property
Yonaguni
8.6 out of 10, Excellent, (48)
"The staff made me feel welcome and they are so friendly. Thanks. "
United States
Reiko
The price is ¥18,655
¥20,521 total
Dec 25 - Dec 26
Yonaguni Hotel Mumbu Higawahama

Private rental accommodation HainukichiyonaguniO / Yaeyama-gun Okinawa

Yaeyama-gun
10.0 out of 10, Exceptional, (1)
"Very spacious and cozy house in traditional Japanese style. Lovely decorated and contains all necessary amenities. Location is a bit far from the village center, but it is only 10-15 minutes walk to any point of interest and it is very quiet place with very low traffic The owner is very friendly and helpful. She told me about traditional local celebration that happened that evening in the village, so I was lucky to be there and also kindly drove me to the airport the day after"
United States
Andrey
The price is ¥22,040
¥25,520 total
Dec 10 - Dec 11
Private rental accommodation HainukichiyonaguniO / Yaeyama-gun Okinawa

Yonaguni Hotel Mumbu Sonai

2.5 star property
Yonaguni
7.4 out of 10, Good, (17)
"Unfortunately the bungalow 202, which we had booked in Sonai was very smelly so it was not acceptable for us to stay there for the 4 nights we booked. In general the Mumbu Sonai branch is pretty run down and heavily overpriced for what it has to offer. I have to say though that the staff was really helpful, especially Ayumi (arigato gozaimasu), trying to find alternatives during peak season which resulted in us staying in 4 different places for the 4 nights we spent on the island, which was ok...
Germany
Susanne
The price is ¥10,182
¥11,200 total
Dec 17 - Dec 18
Yonaguni Hotel Mumbu Sonai

Nonsmoking Breakfast included Superior Queen / Yaeyamagun Okinawa

Yaeyamagun
The price is ¥25,984
¥25,984 total
Jan 8 - Jan 9, 2026
Nonsmoking Breakfast included Superior Queen / Yaeyamagun Okinawa

Nonsmoking Breakfast included Comfort Queen / Yaeyamagun Okinawa

Yaeyamagun
The price is ¥22,504
¥22,504 total
Jan 8 - Jan 9, 2026
Nonsmoking Breakfast included Comfort Queen / Yaeyamagun Okinawa

Nonsmoking Room only Superior Queen Limited number of rooms / Yaeyamagun Okinawa

Yaeyamagun
The price is ¥21,344
¥21,344 total
Jan 8 - Jan 9, 2026
Nonsmoking Room only Superior Queen Limited number of rooms / Yaeyamagun Okinawa

Nonsmoking Okinawa Agu pork shabushabu dinner Comfort Queen / Yaeyamagun Okinawa

Yaeyamagun
The price is ¥32,944
¥32,944 total
Jan 8 - Jan 9, 2026
Nonsmoking Okinawa Agu pork shabushabu dinner Comfort Queen / Yaeyamagun Okinawa

Nonsmoking Okinawa Agu pork shabushabu dinner Superior Queen / Yaeyamagun Okinawa

Yaeyamagun
The price is ¥34,104
¥34,104 total
Jan 8 - Jan 9, 2026
Nonsmoking Okinawa Agu pork shabushabu dinner Superior Queen / Yaeyamagun Okinawa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Yonaguni Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What's there to see and do in Yonaguni?
Once you've decided where you'd like to stay in historic Yonaguni, figure out some fun things to do on your trip. Nanta Beach, Marker for the Westernmost Point of Japan, and Cape Irizaki are some of the local sights worth visiting. While you're here, you might also like to explore more of the area and take in additional sights like Hikawa Beach, Nama hama Beach, and Dr. Koto Clinic Filming Site.
What kind of weather should I plan for when I travel to Yonaguni?
Understanding the weather in Yonaguni will help you enjoy your stay to the fullest. The hottest months are usually August and July with an average temp of 83°F, while the coldest months are January and February with an average of 68°F. The rainiest months in Yonaguni are May, August, September, and June, with each month seeing an average of 11 inches of rainfall.