Top 10 Hotels in Isahaya from ￥6,675 - Competitive Prices

An aerial view of a rural landscape with fields, a small town, and distant mountains.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Isahaya

Apartment

Family friendly

Pool

Apart hotel

Ryokan

Spa

Hot tub

Condo

Waterpark

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for Isahaya hotels

2 restaurants; breakfast, lunch, and dinner served

1. Hotel Nikko Huis Ten Bosch

Sasebo

Walter

￥13,488

￥16,321 total

Sep 1 - Sep 2

Japanese Western Room, Non Smoking (Up to 6 pax. Futons provided for 3-5 pax, extra bed for 6 pax) | Premium bedding, down comforters, desk, laptop workspace

2. Hotel Okura JR Huis Ten Bosch

Sasebo

Ker

￥12,038

￥15,432 total

Sep 1 - Sep 2

In-room safe, iron/ironing board (on request), WiFi (free)

3. Hotel Forza Nagasaki

Nagasaki

Willie

￥7,442

￥8,215 total

Aug 16 - Aug 17

4. Tennen Onsen Hotel Kinshai

Isahaya

HIROKI

￥9,550

￥10,550 total

Aug 17 - Aug 18

5. New Station Hotel Premiere

Isahaya

James

￥8,776

￥9,654 total

Sep 4 - Sep 5

6. Hotel Flags Ishihaya Nagasaki

Isahaya

cat

￥8,077

￥8,884 total

Sep 1 - Sep 2

Superior Twin Room, Non Smoking (3PAX) | Desk, laptop workspace, WiFi (free), bed sheets

7. JR KYUSHU HOTEL Nagasaki

Nagasaki

Wendy

￥7,743

￥8,594 total

Sep 7 - Sep 8

Standard stadium view King room, Non Smoking | Down comforters, memory foam beds, minibar (free items), in-room safe

8. STADIUM CITY HOTEL NAGASAKI

Nagasaki

Yim Mei Olive

￥15,718

￥17,673 total

Aug 16 - Aug 17

Minibar, desk, blackout drapes, iron/ironing board

9. Nagasaki Marriott Hotel

Nagasaki

Hiroko

￥18,000

￥22,770 total

Aug 19 - Aug 20

Twin Room, Non Smoking (New Building) | Iron/ironing board (on request), WiFi (free)

Iron/ironing board (on request), WiFi (free)

10. New Station Hotel

Isahaya

Kenji

￥9,720

￥10,692 total

Aug 12 - Aug 13

11. Hotel Route-Inn Isahaya Inter

Isahaya

?????

￥12,555

￥13,905 total

Aug 11 - Aug 12

Japanese Room | Premium bedding, in-room safe, desk, iron/ironing board (on request)

12. THE GLOBAL VIEW Nagasaki

Nagasaki

Blake

￥8,487

￥9,336 total

Aug 31 - Sep 1

13. FAV LUX NAGASAKI

Nagasaki

Marcus

￥10,090

￥11,099 total

Aug 30 - Aug 31

14. Isahaya Terminal Hotel

Isahaya

koujirou

￥10,909

￥12,000 total

Aug 16 - Aug 17

Comfort Twin Room, Courtyard View | Courtyard view

Comfort Double Room, Courtyard View | Laptop workspace, soundproofing, WiFi (free)

Comfort Twin Room, Courtyard View | Living area | TV

15. Rong Hua Grand Hotel

Isahaya

Maximo

￥13,060

￥14,366 total

Sep 1 - Sep 2

16. Candeo Hotels Nagasaki Shinchi Chinatown

Nagasaki Chinatown

Johnathan

￥11,284

￥12,712 total

Aug 31 - Sep 1

17. Hoshino Resorts KAI Unzen

Unzen

Gabrielle

18. KIKITSU Station Hotel

Isahaya

Barb

￥8,670

￥9,537 total

Aug 24 - Aug 25

19. Dormy Inn Nagasakiekimae Hot Springs

Nagasaki

Eiji

￥11,836

￥13,109 total

Aug 16 - Aug 17

Deluxe Room, 1 King Bed, Corner | Down comforters, in-room safe, desk, iron/ironing board

20. Hilton Nagasaki

Nagasaki

Mark

￥16,400

￥18,040 total

Aug 17 - Aug 18

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Isahaya attractions

Kantaku no Sato

7.4/10 (3 reviews)

This educational complex showcases Isahaya Bay's reclamation history and marine life through its Kantaku Museum and Mutsugoro Aquarium. Enjoy horseback riding, boating, or a 100-meter zipline in the adventure park.

See properties

Konagai Culture Hall

6.0/10 (2 reviews)

This community hub hosts local events and offers a welcoming library for quiet study. Look for the whimsical fruit-shaped bus stops nearby—they make for delightful photo opportunities.

See properties

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

See properties

Todoroki Fall

6.0/10 (1 review)

This 12-meter waterfall creates a thunderous roar as it cascades into crystal-clear pools below. Explore the surrounding valley's lush trails, where 30 smaller falls create a tranquil forest symphony.

See properties

Tsukinooka Park

Explore the great outdoors at Tsukinooka Park, a lovely green space in Isahaya. Wander the Chinatown and waterfront in the area.

See properties

Kannonji Temple

6.0/10 (1 review)

Kannonji Temple offers a serene retreat with traditional Buddhist architecture in Isahaya City, Nagasaki. Visit in early morning to experience the peaceful grounds and cultural artifacts in contemplative solitude.

See properties

Ikoinomori Takaki

Escape to Ikoinomori Takaki, a serene park where locals unwind among lush greenery in Isahaya. Bring a picnic to enjoy under the trees during spring when the natural scenery is most captivating.

See properties

Megane Bridge

This historic double-arch stone bridge creates the illusion of eyeglasses when reflected in water. Visit Isahaya Park to see this Important Cultural Property, especially beautiful during spring's Azalea Festival.

See properties

Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialties.

See all hotels in Isahaya

A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

Nagasaki Marriott Hotel

10/10 Excellent

"Marriott Nagasaki is excellently located next to train station with good tram connections. It is also next to AMU mall where u can do some serious shopping. The room is spacious (at least mine was) with a harbour view although it was not high enough (hotel is 13 floors and we stayed on level 11) Only complaint is lack of full gym facilities- no sauna or onsen. Breakfast is good but can be crowded on weekends. Overall good value for $$$ and I’ll stay there again if ever I’m back in Nagasaki."

Hotel Forza Nagasaki

10/10 Excellent

"Convenient location, helpful staff, clean room."

Cuore Nagasaki EkiMae

8/10 Good

"The Cuore Nagasaki is in an excellent location very close to the train station, bus station, ferry terminal and tram line. It is a standard Japanese hotel with no frills but all the amenities you would expect. The staff are polite and helpful if required. My room was a reasonable size and functional."

Hotel New Nagasaki

10/10 Excellent

"Hotel was clean and close to everything you need for convenience. Staff were very helpful. Next to station"

Hotel Nikko Huis Ten Bosch

8/10 Good

"Staff services"

STADIUM CITY HOTEL NAGASAKI

10/10 Excellent

"Wonderful hotel. Rooms terrific, very spacious. Some rooms overlooking the football stadium. Loved watching them relay the new turf for the upcoming football season. Great restaurants, bit pricey, but you’ll enjoy eating at “eggs n things”. Tram station just outside the hotel - easy ride to the places to visit. Pool is brilliant, overlooking the pitch. We’d love to come back again."

Candeo Hotels Nagasaki Shinchi Chinatown

10/10 Excellent

"Very clean and nice room in a great location in Nagasaki"

Inasayama Kanko Hotel

10/10 Excellent

"Amazing hotel. I got the cheapest room, so the view from my window was an adjoining wall, but the hotel is built on a hill, providing dazzling views of Nagasaki. Splendid place. As to drawbacks, my only complaint is that it is located in an area without nearby restaurants, bars, or even convenience stores. The same isolation that makes it so quiet and grand also means it'll be a fifteen minute, minimum, walk to any businesses. So you do need to be signed up for the hotel's meal plan, or else carry any drinks or shopping home to the hotel on the hill."

Hotel Okura JR Huis Ten Bosch

10/10 Excellent

"Mind blown by this place. What is at your disposal for the price is unbelievable."

More cheap stays in Isahaya

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

￥6,210

￥6,831 total

Aug 26 - Aug 27

5/10 (12 reviews)

Jisco Hotel Obama Onsen

Obamacho Minamihonmachi - 145-2 Unzen Nagasaki

￥8,971

￥9,993 total

Aug 16 - Aug 17

Tennen Onsen Hotel Kinshai

22-12 Saiwaimachi Isahaya Nagasaki

￥9,550

￥10,550 total

Aug 17 - Aug 18

8.2/10 Very Good! (31 reviews)

Grand Base Nagasaki City

2 39 Tamazonomachi Nagasaki Nagasaki Prefecture

￥11,190

￥12,309 total

Sep 1 - Sep 2

8.2/10 Very Good! (122 reviews)

HOTEL URO - hostel

6-10 Kajiya-machi Nagasaki Nagasaki

￥13,382

￥14,806 total

Sep 2 - Sep 3

9/10 Wonderful! (2 reviews)

Capsule Hotel Nagasaki

14-4 Dozamachi, 2F Nagasaki Nagasaki

Get rates

7.8/10 Good! (16 reviews)

Hotels in Isahaya with star-rating

Frequently asked questions

What's the best place for a stay in Isahaya?

Based on our traveler data, New Station Hotel Premiere is one of the top choices for your stay. This hotel offers free parking and free WiFi. Other good choices for your trip to the area are Hotel Nikko Huis Ten Bosch and Hotel Okura JR Huis Ten Bosch. See all available top hotels, or vacation rentals in Isahaya.

What are some of the best vacation rentals that Isahaya has to offer?

Rakuten STAY HOUSE x WILLSTYLE SASEBO: This vacation home rental near Isahaya has air-conditioning and laundry facilities to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. See all vacation rentals in Isahaya.

If I need to cancel my hotel reservation in Isahaya, will I receive a refund?

Yes! The majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before check in. If you have a non-refundable reservation, you might be able to still cancel and receive a refund within a 24-hour period of your booking. Filter your search by fully refundable to find flexible hotel deals in Isahaya.

Where can I learn more about changing or cancelling my trip to Isahaya?

To access more information about updating your trip to Isahaya or cancelling it, click here.

Where is the best hotel to stay with easy access to Kantaku no Sato?

Hotel Flags Ishihaya Nagasaki is one of the top choices for your stay based on our traveler data, and this 3-star hotel offers a restaurant and free parking. It's located 2.2 mi (3.5 km) from Kantaku no Sato. Other good options within a few miles include New Station Hotel and New Station Hotel Premiere.

What about the best place to stay near Isahaya Park?

One of the top choices for your stay is New Station Hotel Residence, located next to Isahaya Park, and this 3-star hotel offers free WiFi and parking. Hotel Flags Ishihaya Nagasaki and New Station Hotel are a couple of other good options close by.

What are some accommodations with pools in Isahaya?

STADIUM CITY HOTEL NAGASAKI: Features a children's pool, an indoor pool, and 5 restaurants. View all hotels with pools in Isahaya.

What is the best spa hotel in Isahaya?

Super Hotel Nagasaki Isahaya Natural Hot Spring is a top spa hotel with 152 rooms, free WiFi, and off-street parking. Treat yourself to the hot springs at the on-site spa. See all spa hotels in Isahaya.

What's the best hotel for staying near Nagasaki Airport (NGS)?

Chisun Inn Nagasaki Airport is a popular 3-star hotel featuring free WiFi and free parking. It's located a short 1.6 mi (2.6 km) from Nagasaki Airport. Other choices close to the airport are Omura Station Hotel and Omura Station Hotel.

What's it like to stay in Isahaya?

Visitors can enjoy all that Isahaya has to offer including the parks and monuments. In Isahaya, there are 21 hotels and other accommodations to choose from. Find out more about Isahaya.

What should I see while I'm in Isahaya?

Landmarks like Kantaku no Sato, Isahaya Park, and Megane Bridge might be worth a visit. Natural beauty is on display at Todoroki Fall, Tsukinooka Park, and Ikoinomori Takaki. A couple of additional sights to add to your agenda are Konagai Culture Hall and Moriyama Sports Community Square. Check out what more to see and do in Expedia's Isahaya guide.

What's the seasonal weather like in Isahaya?

The hottest months are usually August and July with an average temp of 77°F, while the coldest months are January and February with an average of 48°F. The rainiest months in Isahaya are June, July, August, and May, with each month seeing an average of 15 inches of rainfall.

Explore a world of travel with Expedia

Unzen Vacations

Omura Vacation Rentals

Book Hotels in Isahaya on Expedia.co.jp

Find hotels in Isahaya from ￥6,675

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Isahaya hotels

1. Hotel Nikko Huis Ten Bosch

2. Hotel Okura JR Huis Ten Bosch

3. Hotel Forza Nagasaki

4. Tennen Onsen Hotel Kinshai

5. New Station Hotel Premiere

6. Hotel Flags Ishihaya Nagasaki

7. JR KYUSHU HOTEL Nagasaki

8. STADIUM CITY HOTEL NAGASAKI

9. Nagasaki Marriott Hotel

10. New Station Hotel

11. Hotel Route-Inn Isahaya Inter

12. THE GLOBAL VIEW Nagasaki

13. FAV LUX NAGASAKI

14. Isahaya Terminal Hotel

15. Rong Hua Grand Hotel

16. Candeo Hotels Nagasaki Shinchi Chinatown

17. Hoshino Resorts KAI Unzen

18. KIKITSU Station Hotel

19. Dormy Inn Nagasakiekimae Hot Springs

20. Hilton Nagasaki

Stay near popular Isahaya attractions

Kantaku no Sato

Konagai Culture Hall

Isahaya Park

Todoroki Fall

Tsukinooka Park

Kannonji Temple

Ikoinomori Takaki

Megane Bridge

Learn more about Isahaya

Top Isahaya Hotel Reviews

Nagasaki Marriott Hotel

Hotel Forza Nagasaki

Cuore Nagasaki EkiMae

Hotel New Nagasaki

Hotel Nikko Huis Ten Bosch

STADIUM CITY HOTEL NAGASAKI

Candeo Hotels Nagasaki Shinchi Chinatown

Inasayama Kanko Hotel

Hotel Okura JR Huis Ten Bosch

More cheap stays in Isahaya

Hotel 21

Jisco Hotel Obama Onsen

Tennen Onsen Hotel Kinshai

Grand Base Nagasaki City

HOTEL URO - hostel

Capsule Hotel Nagasaki

Hotels in Isahaya with star-rating

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app