Find hotels in Henderson Harbor, NY from ￥9,351

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Compare 189 hotels, room rates, hotel reviews and availability. Most hotels are fully refundable.

Property grounds
The GillHouse

The GillHouse

2.0 star property
Henderson Harbor
9.2 out of 10, Wonderful, (5)
"Clean room "
United States
Byron
The price is ￥19,020
￥21,113 total
includes taxes & fees
Dec 6 - Dec 7
The GillHouse
Exterior
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

2.5 star property
Watertown
9.2 out of 10, Wonderful, (1000)
"Stuff was very friendly, room was very clean and breakfast was good."
Canada
Cheryl
The price is ￥13,583
￥15,076 total
includes taxes & fees
Dec 19 - Dec 20
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
Exterior
Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY

2.5 star property
Watertown
8.0 out of 10, Very Good, (1046)
"Perfectly located for all shopping and restaurants within walking distance if desired"
Canada
Steve
The price is ￥11,652
￥12,932 total
includes taxes & fees
Jan 1 - Jan 2, 2026
Ramada by Wyndham Watertown/Thousand Islands NY
Desk, iron/ironing board, free cribs/infant beds, free WiFi
Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands

2.5 star property
Watertown
8.6 out of 10, Excellent, (1015)
"Friendly staff"
Canada
Dale
The price is ￥13,240
￥14,697 total
includes taxes & fees
Dec 14 - Dec 15
Comfort Inn & Suites Watertown - 1000 Islands
Restaurant
Hampton Inn Watertown

Hampton Inn Watertown

2.5 star property
Watertown
9.0 out of 10, Wonderful, (1000)
"Great stay "
United States
David
The price is ￥14,809
￥16,439 total
includes taxes & fees
Dec 31 - Jan 1, 2026
Hampton Inn Watertown
Lobby
Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum

2.5 star property
Calcium
8.4 out of 10, Very Good, (1005)
"Rooms are always clean, fresh , hot water within seconds , good clear tv and excellent in room coffee !"
Canada
Alan
The price is ￥8,798
￥9,766 total
includes taxes & fees
Dec 14 - Dec 15
Quality Inn & Suites Watertown Fort Drum
Lobby
Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

2.0 star property
Calcium
8.8 out of 10, Excellent, (1013)
"Clean room / nice staff / parking / got tub"
United States
candy
The price is ￥10,125
￥11,239 total
includes taxes & fees
Dec 14 - Dec 15
Days Inn by Wyndham Watertown Fort Drum
Exterior
Hilton Garden Inn Watertown/Thousand Islands

Hilton Garden Inn Watertown/Thousand Islands

3.0 star property
Watertown
9.2 out of 10, Wonderful, (978)
"Very good stay, food and drinks were very good as well"
United States
Christopher james
The price is ￥18,010
￥19,990 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Hilton Garden Inn Watertown/Thousand Islands
Room, 1 Queen Bed | Premium bedding, free WiFi, bed sheets
Allen's Budget Motel

Allen's Budget Motel

2.5 star property
Watertown
8.8 out of 10, Excellent, (246)
"Stay was very comfortable and the staff was excellent "
United States
Randall
The price is ￥9,022
￥10,014 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Allen's Budget Motel
Property entrance
Royal Inn Motel

Royal Inn Motel

2.0 star property
Watertown
7.2 out of 10, Good, (406)
"Clean, very nice people."
United States
Marek
The price is ￥8,424
￥9,351 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Royal Inn Motel
Premium bedding, individually decorated, individually furnished, desk
Candlewood Suites Watertown Fort Drum by IHG

Candlewood Suites Watertown Fort Drum by IHG

2.5 star property
Evans Mills
8.4 out of 10, Very Good, (491)
"As usual the staff and room were top notch."
Canada
Ann
The price is ￥13,565
￥15,056 total
includes taxes & fees
Dec 10 - Dec 11
Candlewood Suites Watertown Fort Drum by IHG
Lobby
Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands

2.5 star property
Watertown
9.2 out of 10, Wonderful, (710)
"Nice clean hotel with friendly staff"
United States
Irina
The price is ￥16,000
￥17,760 total
includes taxes & fees
Dec 13 - Dec 14
Fairfield Inn & Suites Watertown Thousand Islands
Indoor pool, open 2:00 PM to 9:30 PM, sun loungers
Adirondack Efficiencies Watertown

Adirondack Efficiencies Watertown

2.0 star property
Watertown
6.8 out of 10, (546)
"Really clean and a good place to stay "
United States
Yira
The price is ￥8,556
￥9,497 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Adirondack Efficiencies Watertown
Deluxe Single Room, 1 Queen Bed | Desk, laptop workspace, free WiFi
Nest Inn

Nest Inn

2.0 star property
Watertown
7.8 out of 10, Good, (59)
"Nice place for the price"
Canada
Ryan
The price is ￥7,906
￥9,639 total
includes taxes & fees
Dec 4 - Dec 5
Nest Inn
Premium Room, 1 Queen Bed with Sofa bed | Free WiFi
Harbor House Inn

Harbor House Inn

2.5 star property
Sackets Harbor
9.2 out of 10, Wonderful, (300)
"Excellent hosts "
United States
Daniel
The price is ￥22,599
￥25,084 total
includes taxes & fees
Dec 4 - Dec 5
Harbor House Inn
Double Room, 2 Double Beds, Roll-in Shower, Non Smoking | Desk, laptop workspace, blackout drapes, iron/ironing board
Travel Inn

Travel Inn

Watertown
5.8 out of 10, (6)
"We were given the excuse that management had just changed over. Had to go to the front desk several times, which was never attended. I had called from the room but nobody answered. Even after ringing the bell, took quite a while for someone to show up. One visit to the desk was because we ran out of tp and were only there 1 night. There was no extra roll in the room. Another was because TV didn't work, just fuzz. Given a vague explanation of how it worked but were only able to get one channel to...
United States
Kathryn
The price is ￥10,628
￥11,797 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Travel Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Stay near popular Henderson Harbor attractions

Saiff Charters

Lake Ontario comes alive with Saiff Charters' expert-guided salmon and trout fishing excursions. Experienced captains ensure a productive day on fully equipped boats while you enjoy lodging and meals.
See properties

Learn more about Henderson Harbor

Venture to sights like Lake Ontario and Saiff Charters as you discover Henderson Harbor.

See all hotels in Henderson Harbor
Lake Ontario Panorama

Top Henderson Harbor Hotel Reviews

Hampton Inn Watertown

Hampton Inn Watertown

10/10 Excellent
"Wonderful, courteous staff "
Ned 3-night trip
Posted 4 days ago
Hampton Inn Watertown

More cheap stays in Henderson Harbor

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY
The price is ￥13,583 per night from Dec 19 to Dec 20
￥13,583
￥15,076 total
Dec 19 - Dec 20
includes taxes & fees
9.2/10 Wonderful! (1,012 reviews)

Frequently asked questions

Where is the best place for a stay in Henderson Harbor?
Based on our traveler data, The GillHouse is one of the top choices for your stay. This hotel offers a restaurant and free parking. Henderson Harbor Cottage w/ Lake Access! is another good option for your trip. See all available top hotels, or vacation rentals in Henderson Harbor.
What are some of the best vacation rentals in Henderson Harbor?
Lakehouse at Pillar Point on Lake Ontario, a relaxing home with stunning sunsets: This vacation home rental near Henderson Harbor is located on a lake and has a fireplace, a patio, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. Kick off your shoes and enjoy yourself with a garden and a selection of games. See all vacation rentals in Henderson Harbor.
If I need to cancel my hotel reservation in Henderson Harbor, will I receive a refund?
Yes, the majority of hotel bookings are fully refundable as long as you cancel prior to the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you might be able to still cancel and get a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Henderson Harbor.
Where can I learn more about changing or cancelling my trip to Henderson Harbor?
For additional details about updating your trip to Henderson Harbor or cancelling it, head over to our customer service page.
What's the best pet-friendly hotel in Henderson Harbor?
The GillHouse is a top dog-friendly hotel, and offers a restaurant and a bar/lounge for its human guests. See more pet-friendly hotel accommodations in Henderson Harbor.
What are some accommodations with pools in Henderson Harbor?
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG: Provides daily, an indoor pool, and free self parking. Comfort Inn & Suites Watertown - 1000 Islands and Hampton Inn Watertown are two additional hotels that feature an onsite pool. View all hotels with pools in Henderson Harbor.
How is it to stay in Henderson Harbor?
Those traveling to Henderson Harbor are sure to enjoy the sights to see and things to do. In Henderson Harbor, there are 5 hotels and other accommodations to choose from. Find out more about Henderson Harbor.
What should I see while I'm in Henderson Harbor?
A couple of favorite places to visit are Lake Ontario and Saiff Charters. You'll also find Southwick Beach State Park and Sackets Harbor Battlefield State Park in the area. Check out what more to see and do in Expedia's Henderson Harbor guide.
What's the seasonal weather like in Henderson Harbor?
The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 27°F. The snowiest months in Henderson Harbor are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

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