Top 10 Hotels in Henderson Harbor, NY from ￥9,973 - Competitive Prices

A large body of water surrounded by dense forests and a winding road.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Henderson Harbor

Pet friendly

Apartment

Pool

Condo

Family friendly

Cottage

Waterpark

Check prices for these dates

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Henderson Harbor hotels

A building with a balcony overlooking a body of water, surrounded by greenery.

A spacious living area with a wooden floor, a sofa, a dining table, and a bar area with a counter and shelves.

A hotel room with two beds, a ceiling fan, wall-mounted lamps, and framed pictures.

A building with a sign reading "GILLHOUSE" and a stone wall to the left.

1. The GillHouse

Henderson Harbor

Barbara

￥17,694

￥19,641 total

includes taxes & fees

Oct 11 - Oct 12

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

A cozy room with a stone fireplace, two floral armchairs, a small wooden table, and a large window offering a view of the outside.

A lobby with a reception desk, seating area, and a large potted plant.

2. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Jiewu

￥9,224

￥10,239 total

includes taxes & fees

Oct 25 - Oct 26

A lobby with a reception desk, a red vending machine, a black leather couch, and a patterned floor.

A hotel room with a bed, a sofa, a desk, a lamp, a window with curtains, and a bathroom with a sink and mirror.

A vending machine with various snacks and drinks.

3. Travel Inn

Watertown

Trina

￥8,986

￥9,973 total

includes taxes & fees

Oct 4 - Oct 5

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

A reception desk with a "Welcome to Watertown" sign, framed pictures, and a "Hilton Honors" sign.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

4. Hampton Inn Watertown

Watertown

Wanda

￥15,503

￥17,209 total

includes taxes & fees

Oct 17 - Oct 18

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.

5. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Yandry

￥15,107

￥16,770 total

includes taxes & fees

Oct 22 - Oct 23

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

A modern breakfast bar with a coffee machine, cereal, and fruit options.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

6. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Bridget

￥16,829

￥18,680 total

includes taxes & fees

Oct 28 - Oct 29

A modern bedroom with a bed, bedside lamp, air conditioning unit, and a mounted TV displaying a streaming service interface.

A bathroom with a white sink, a modern faucet, and a blue soap dispenser.

A reception desk with a 'Welcome Centre' sign, a window with blinds, and a tiled floor.

A Nest Inn sign, a parking area, and a building with a red exterior.

7. Nest Inn

Watertown

Harrison

￥8,918

￥10,767 total

includes taxes & fees

Sep 28 - Sep 29

A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.

A reception desk with a modern design, featuring a wooden finish and a large abstract painting above it.

A gym with various exercise machines, a television, and a green wall.

A hotel room with a bed, a television, a desk, and a window.

8. Spark by Hilton Watertown

Watertown

Alan

￥14,058

￥15,604 total

includes taxes & fees

Oct 4 - Oct 5

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A hallway with a painting of a lighthouse, two upholstered chairs, a wooden console table with a vase of flowers, and a mirror on the wall.

A building with a flat roof and a parking lot in front.

A kitchen with a coffee maker, a fruit bowl, and a bread display.

9. Harbor House Inn

Sackets Harbor

Jeanne

￥30,179

￥35,174 total

includes taxes & fees

Oct 4 - Oct 5

A room with a bed, a chair, a table, and a lamp.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.

A hotel room with a bed, a desk, a chair, and a small table.

10. Allen's Budget Motel

Watertown

Robert

￥9,437

￥10,475 total

includes taxes & fees

Sep 28 - Sep 29

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.

A swimming pool with a changing room, sun loungers, and a hot tub area.

11. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Melanie

￥20,383

￥22,626 total

includes taxes & fees

Oct 11 - Oct 12

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

A spacious lobby with high ceilings, large windows, and modern furniture.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

12. Hilton Garden Inn Watertown/Thousand Islands

Watertown

Suzanne

￥19,603

￥21,759 total

includes taxes & fees

Oct 18 - Oct 19

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

A modern building with a covered entrance, multiple windows, and a parking lot.

13. Quality Inn & Suites Watertown Fort Drum

Calcium

Nicole

￥10,123

￥11,236 total

includes taxes & fees

Oct 25 - Oct 26

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A pair of white front-loading washers in a laundry room with a tiled floor.

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.

14. Days Inn by Wyndham Watertown Fort Drum

Calcium

Robert

￥12,268

￥13,618 total

includes taxes & fees

Oct 18 - Oct 19

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

A building with a sign reading "Adirondack Efficiencies."

An outdoor patio area with white plastic chairs and a table, surrounded by a wooden deck and a view of a golf course.

A wooden desk with a flat-screen TV, a mirror, and a coffee maker.

15. Adirondack Efficiencies Watertown

Watertown

Blair

￥11,481

￥12,744 total

includes taxes & fees

Sep 28 - Sep 29

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A staircase with wooden handrails leading to an upper floor.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

A hotel reception area with a white door, a reception desk, and a sign indicating the Royal Inn Office.

16. Royal Inn Motel

Watertown

Gary

￥9,712

￥10,780 total

includes taxes & fees

Sep 28 - Sep 29

A wooden deck with a table and chairs, overlooking a lake with boats and a dock.

A wooden dock extending into a body of water, a staircase leading to a house, and a covered outdoor area with an umbrella.

A hallway with a white door, wooden flooring, and an archway leading to a dining area.

A spacious living area with a wooden floor, a sofa, a chair, and a dining table. There is a large window with a view of a snowy landscape.

17. Family Cottage on Chaumont Bay, Walk to Downtown

Chaumont

￥35,231

￥71,141 total

includes taxes & fees

Sep 28 - Sep 29

A hotel room with two beds, a desk with a coffee maker, a TV, and a view of trees through the window.

A kitchen with open shelves, a microwave, and a toaster.

A modern living room with a flat-screen TV, a wooden coffee table, a sofa, a bookshelf, and a patterned rug.

A hotel with a prominent "CANDLEWOOD SUITES" sign, a parking lot, and a building with a mix of red and blue facades.

18. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Tara

￥20,761

￥23,045 total

includes taxes & fees

Oct 18 - Oct 19

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Henderson Harbor attractions

Saiff Charters

Lake Ontario comes alive with Saiff Charters' expert-guided salmon and trout fishing excursions. Experienced captains ensure a productive day on fully equipped boats while you enjoy lodging and meals.

See properties

Learn more about Henderson Harbor

Venture to sights like Lake Ontario and Saiff Charters as you discover Henderson Harbor.

See all hotels in Henderson Harbor

Top Henderson Harbor Hotel Reviews

Spark by Hilton Watertown

10/10 Excellent

"The recent renovations look great! We had stayed previous to Hilton buying it and remodeling it. It is definitely upgraded now!"

Days Inn by Wyndham Watertown Fort Drum

8/10 Good

"N/A"

Ramada by Wyndham Watertown/Thousand Islands NY

10/10 Excellent

"We had very good experience staying here."

Fairfield Inn & Suites Watertown Thousand Islands

10/10 Excellent

"Good place. No complaints. Breakfast is from 6am-9am with a decent amount of hot and cold items. They had dairy free items (e.g. oat milk, Silk yogurt, bread)."

Nest Inn

10/10 Excellent

"Nice clean rooms. The staff are very helpful and friendly. Nice and approachable."

The GillHouse

10/10 Excellent

"We stayed at Gill House for a wedding. The accommodations were perfect and the location"

Hilton Garden Inn Watertown/Thousand Islands

10/10 Excellent

"Wonderful stay!!!"

Allen's Budget Motel

10/10 Excellent

"I loved that it was a family run establishment, they were very helpful. The room had a kitchenette which was really nice and everything was well maintained inside."

Royal Inn Motel

10/10 Excellent

"Friendly and clean"

More cheap stays in Henderson Harbor

Travel Inn

1190 Arsenal St Watertown NY

￥8,986

￥9,973 total

Oct 4 - Oct 5

includes taxes & fees

6.4/10 (83 reviews)

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

￥9,224

￥10,239 total

Oct 25 - Oct 26

includes taxes & fees

8/10 Very Good! (1,117 reviews)

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

￥10,123

￥11,236 total

Oct 25 - Oct 26

includes taxes & fees

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

￥12,268

￥13,618 total

Oct 18 - Oct 19

includes taxes & fees

8.8/10 Excellent! (1,010 reviews)

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

￥15,107

￥16,770 total

Oct 22 - Oct 23

includes taxes & fees

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY

￥16,829

￥18,680 total

Oct 28 - Oct 29

includes taxes & fees

Frequently asked questions

Where is the best place for a stay in Henderson Harbor?

Based on our traveler data, The GillHouse is one of the top choices for your stay. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and free parking. Other good choices for your trip to the area are Ramada by Wyndham Watertown/Thousand Islands NY and Spark by Hilton Watertown. See all available top hotels, or vacation rentals in Henderson Harbor.

What are some of the best vacation rentals in Henderson Harbor?

Lake Ontario Waterfront @ Pillar Point | Boat Ramp, Fire Pit, Kayaks & Game Room: This vacation home near Henderson Harbor is located on the beach and has a balcony, a garden, and a barbecue grill to put you at ease in your new surroundings. It has 6 bedrooms as well as a kitchen with a dishwasher, a fridge, and a stovetop, so you can cook with friends or family. Make the most of the selection of games in this rental home to help you unwind. See all vacation rentals in Henderson Harbor.

If I need to cancel my hotel reservation in Henderson Harbor, will I receive a refund?

Yes, the majority of hotel bookings are fully refundable as long as you cancel prior to the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you might be able to still cancel and get a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Henderson Harbor.

Where can I learn more about changing or cancelling my trip to Henderson Harbor?

For additional details about updating your trip to Henderson Harbor or cancelling it, head over to our customer service page.

What's the best pet-friendly hotel in Henderson Harbor?

The GillHouse is a top dog-friendly hotel, and offers a restaurant and a bar/lounge for its human guests. See more pet-friendly hotel accommodations in Henderson Harbor.

What are some accommodations with pools in Henderson Harbor?

Ramada by Wyndham Watertown/Thousand Islands NY: Features daily, a seasonal outdoor pool, and free self parking. Comfort Inn & Suites Watertown - 1000 Islands and Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG are two additional hotels that feature an onsite pool. View all hotels with pools in Henderson Harbor.

How is it to stay in Henderson Harbor?

Those traveling to Henderson Harbor are sure to enjoy the sights to see and things to do. In Henderson Harbor, there are 5 hotels and other accommodations to choose from. Find out more about Henderson Harbor.

What should I see while I'm in Henderson Harbor?

A couple of favorite places to visit are Lake Ontario and Saiff Charters. You'll also find Southwick Beach State Park and Sackets Harbor Battlefield State Park in the area. Check out what more to see and do in Expedia's Henderson Harbor guide.

What's the seasonal weather like in Henderson Harbor?

The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 27°F. The snowiest months in Henderson Harbor are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

Explore a world of travel with Expedia

Syracuse Vacations

Car rental Syracuse

Mexico Vacation Rentals

Book Hotels in Henderson Harbor on Expedia.com

Find hotels in Henderson Harbor, NY from ￥9,973

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Henderson Harbor

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Henderson Harbor hotels

1. The GillHouse

2. Ramada by Wyndham Watertown/Thousand Islands NY

3. Travel Inn

4. Hampton Inn Watertown

5. Comfort Inn & Suites Watertown - 1000 Islands

6. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

7. Nest Inn

8. Spark by Hilton Watertown

9. Harbor House Inn

10. Allen's Budget Motel

11. Fairfield Inn & Suites Watertown Thousand Islands

12. Hilton Garden Inn Watertown/Thousand Islands

13. Quality Inn & Suites Watertown Fort Drum

14. Days Inn by Wyndham Watertown Fort Drum

15. Adirondack Efficiencies Watertown

16. Royal Inn Motel

17. Family Cottage on Chaumont Bay, Walk to Downtown

18. Candlewood Suites Watertown Fort Drum by IHG

Stay near popular Henderson Harbor attractions

Saiff Charters

Learn more about Henderson Harbor

Top Henderson Harbor Hotel Reviews

Spark by Hilton Watertown

Days Inn by Wyndham Watertown Fort Drum

Ramada by Wyndham Watertown/Thousand Islands NY

Fairfield Inn & Suites Watertown Thousand Islands

Nest Inn

The GillHouse

Hilton Garden Inn Watertown/Thousand Islands

Allen's Budget Motel

Royal Inn Motel

More cheap stays in Henderson Harbor

Travel Inn

Ramada by Wyndham Watertown/Thousand Islands NY

Quality Inn & Suites Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

Comfort Inn & Suites Watertown - 1000 Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app