Plan, book, travel with confidence
Better together
Save up to ￥45,448 when you book a flight and hotel together*
Find the right fit
With over 300,000 hotels worldwide, it's easy to create a perfect package
Rest easy
Plan, book, and manage your trip all in one place

Top Luxury San Juan Islands Hotels

Earthbox Inn & Spa

410 Spring Street Friday Harbor WA

13 min drive from Roche Harbor Marina

Choose luxury at Earthbox Inn & Spa, where you can enjoy amenities like Egyptian cotton sheets, premium channels, and more. The spa, indoor pool, and fitness ...

Bird Rock Hotel

35 First Street Friday Harbor WA

13 min drive from Roche Harbor Marina

Go for a luxurious stay at Bird Rock Hotel, where you can enjoy amenities like Egyptian cotton sheets, plush bedding, and more. Sought-after amenities include ...

8.8/10 Excellent! (364 reviews)

Nice room. Nice location.

Reviewed on Feb 16, 2026

Deer Harbor Inn

33 Inn Lane Deer Harbor WA

28 min walk from Roche Harbor Marina

Take a lavish vacation in Deer Harbor. Popular amenities include a restaurant, a terrace, and a garden.

8.4/10 Very Good! (201 reviews)

Parking was easy, and the property was quiet and gorgeous and the room was comfortable.

Reviewed on Mar 4, 2026

See all 548 properties in San Juan Islands

Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.