Find hotels in Southeast San Rafael, San Rafael

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Dec 19 - Dec 20
Tomorrow
Dec 20 - Dec 21
This weekend
Dec 19 - Dec 21
Next weekend
Dec 26 - Dec 28

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Southeast San Rafael hotels

Pool
Extended Stay America Suites San Rafael Francisco Blvd East

Extended Stay America Suites San Rafael Francisco Blvd East

Extended Stay America Suites San Rafael Francisco Blvd East
2.5 star property
Southeast San Rafael
6.8 out of 10, (1001)
"The room was clean! And the service was great!"
United States
Ana Lorena
The price is ￥17,223
￥19,324 total
includes taxes & fees
Dec 22 - Dec 23
Extended Stay America Suites San Rafael Francisco Blvd East
Lobby sitting area
Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
17.8 km from Southeast San Rafael
9.0 out of 10, Wonderful, (7202)
"Great stay"
United States
Isaac
The price is ￥16,723
￥26,094 total
includes taxes & fees
Dec 23 - Dec 24
Hotel Riu Plaza Fisherman's Wharf
Front of property - evening/night
Hilton San Francisco Financial District

Hilton San Francisco Financial District

Hilton San Francisco Financial District
4.0 star property
19.3 km from Southeast San Rafael
8.6 out of 10, Excellent, (2150)
"Great hotel "
United States
Tanya
The price is ￥16,674
￥19,625 total
includes taxes & fees
Dec 22 - Dec 23
Hilton San Francisco Financial District
Exterior
The Mosser

The Mosser

The Mosser
3.0 star property
20.4 km from Southeast San Rafael
8.0 out of 10, Very Good, (1001)
"Easy check-in, nice swanky little lobby and friendly staff. The room was small though not an issue as it had everything we needed and was clean. Neat old building right next to moscone center west and near lots of restaurants. Great location for the price."
United States
Jon
The price is ￥9,803
￥11,518 total
includes taxes & fees
Jan 4 - Jan 5, 2026
The Mosser
Free daily buffet breakfast
Holiday Inn Express Hotel & Suites Berkeley by IHG

Holiday Inn Express Hotel & Suites Berkeley by IHG

Holiday Inn Express Hotel & Suites Berkeley by IHG
2.5 star property
20.3 km from Southeast San Rafael
9.0 out of 10, Wonderful, (1000)
"The room are very clean and the staff is very courteous and friendly. "
United States
Maria Carmen
The price is ￥21,473
￥24,735 total
includes taxes & fees
Dec 22 - Dec 23
Holiday Inn Express Hotel & Suites Berkeley by IHG
Interior
Hotel Shattuck Plaza

Hotel Shattuck Plaza

Hotel Shattuck Plaza
4.0 star property
22.1 km from Southeast San Rafael
8.8 out of 10, Excellent, (1083)
"Wonderful, will stay here again."
United States
Jennifer
The price is ￥20,823
￥23,987 total
includes taxes & fees
Dec 22 - Dec 23
Hotel Shattuck Plaza
Exterior
DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
18.6 km from Southeast San Rafael
8.2 out of 10, Very Good, (3953)
"Great place to stay!"
United States
Rafael
The price is ￥17,458
￥20,111 total
includes taxes & fees
Jan 4 - Jan 5, 2026
DoubleTree by Hilton Hotel Berkeley Marina
Terrace/patio
Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco
4.0 star property
19.5 km from Southeast San Rafael
8.8 out of 10, Excellent, (2812)
"Clean and comfortable room, good staff, great location. "
United Kingdom
David
The price is ￥15,603
￥18,364 total
includes taxes & fees
Dec 22 - Dec 23
Club Quarters Hotel in San Francisco
Terrace/patio
Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge
3.0 star property
22.2 km from Southeast San Rafael
8.6 out of 10, Excellent, (1289)
"Great overnight stay and across the street from the Bay Street shopping district."
United States
Sasha
The price is ￥16,805
￥20,598 total
includes taxes & fees
Jan 9 - Jan 10, 2026
Sonesta Emeryville - San Francisco Bay Bridge
Lobby sitting area
Chancellor Hotel on Union Square

Chancellor Hotel on Union Square

Chancellor Hotel on Union Square
3.5 star property
19.8 km from Southeast San Rafael
9.4 out of 10, Exceptional, (3079)
"Great hotel, great location, super friendly all staff "
Mexico
Claudia
The price is ￥11,947
￥14,117 total
includes taxes & fees
Dec 23 - Dec 24
Chancellor Hotel on Union Square
Egyptian cotton sheets, premium bedding, down comforters, pillowtop beds
Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
17.7 km from Southeast San Rafael
9.0 out of 10, Wonderful, (3834)
"Excellent stay and great location! "
United States
CHRISTINE
The price is ￥18,905
￥29,392 total
includes taxes & fees
Dec 22 - Dec 23
Hotel Caza Fisherman's Wharf
Exterior
Handlery Union Square Hotel

Handlery Union Square Hotel

Handlery Union Square Hotel
3.5 star property
20 km from Southeast San Rafael
8.8 out of 10, Excellent, (2790)
"Clean hotel, great location, kind staff! "
United States
Felix
The price is ￥163,263
￥192,152 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Handlery Union Square Hotel
Restaurant
Grand Hyatt San Francisco

Grand Hyatt San Francisco

Grand Hyatt San Francisco
4.0 star property
19.9 km from Southeast San Rafael
8.8 out of 10, Excellent, (1001)
"Staff was friendly and helpful. Rooms were clean and dining on site was convenient. "
United States
Suzanne
The price is ￥21,139
￥32,306 total
includes taxes & fees
Jan 3 - Jan 4, 2026
Grand Hyatt San Francisco
Exterior
King George Hotel

King George Hotel

King George Hotel
3.0 star property
20 km from Southeast San Rafael
8.6 out of 10, Excellent, (2107)
"Great place!"
United States
Troy
The price is ￥13,484
￥18,237 total
includes taxes & fees
Jan 8 - Jan 9, 2026
King George Hotel
Free daily buffet breakfast
Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG
3.0 star property
17.8 km from Southeast San Rafael
9.2 out of 10, Wonderful, (2223)
"Hotel is so nice, the room is so clean, the staff is so nice."
United States
Griselda
The price is ￥18,516
￥26,461 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Holiday Inn Express and Suites Fisherman's Wharf by IHG
Exterior
HYATT house Emeryville/San Francisco Bay Area

HYATT house Emeryville/San Francisco Bay Area

HYATT house Emeryville/San Francisco Bay Area
3.0 star property
21.9 km from Southeast San Rafael
9.2 out of 10, Wonderful, (1179)
"It was a great stay overall "
United States
LaMar
The price is ￥22,406
￥25,138 total
includes taxes & fees
Dec 26 - Dec 27
HYATT house Emeryville/San Francisco Bay Area
Terrace/patio
Hilton Garden Inn San Francisco/Oakland Bay Bridge

Hilton Garden Inn San Francisco/Oakland Bay Bridge

Hilton Garden Inn San Francisco/Oakland Bay Bridge
3.0 star property
21.6 km from Southeast San Rafael
8.8 out of 10, Excellent, (1167)
"Nice staff clean rooms"
United States
Kiran
The price is ￥17,559
￥19,700 total
includes taxes & fees
Dec 24 - Dec 25
Hilton Garden Inn San Francisco/Oakland Bay Bridge
Room, 1 King Bed (High Floor) | City view
citizenM San Francisco Union Square

citizenM San Francisco Union Square

citizenM San Francisco Union Square
4.0 star property
20.2 km from Southeast San Rafael
9.4 out of 10, Exceptional, (1426)
"Great location."
United States
Todd
The price is ￥15,739
￥18,524 total
includes taxes & fees
Dec 24 - Dec 25
citizenM San Francisco Union Square
Exterior detail
Hilton San Francisco Union Square

Hilton San Francisco Union Square

Hilton San Francisco Union Square
4.0 star property
20.1 km from Southeast San Rafael
8.4 out of 10, Very Good, (1128)
"Great stay, friendly staff, and clean room!"
United States
Maria
The price is ￥24,625
￥35,394 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Hilton San Francisco Union Square
Terrace/patio
Hyatt Place Emeryville/San Francisco Bay Area

Hyatt Place Emeryville/San Francisco Bay Area

Hyatt Place Emeryville/San Francisco Bay Area
3.0 star property
22.1 km from Southeast San Rafael
8.8 out of 10, Excellent, (1002)
"The entire stay was fabulous…room, breakfast, friendliness of staff, comfort and quiet!"
United States
Carol
The price is ￥19,294
￥21,648 total
includes taxes & fees
Dec 29 - Dec 30
Hyatt Place Emeryville/San Francisco Bay Area
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Where to stay in Southeast San Rafael

Find the best Southeast San Rafael areas and neighborhoods for the activities you enjoy most.

Terra Linda

Discover the Mall at Northgate, Marin County's only enclosed mall, featuring a 15-screen theater complex and anchor tenants like Macy's. Nearby, admire the Frank Lloyd Wright-designed Marin County Civic Center building.

Mission San Rafael Arcangel showing a church or cathedral, heritage architecture and religious elements

Downtown San Rafael

While visiting Downtown San Rafael, you might make a stop by sights like Mission San Rafael Arcangel and San Rafael Pacifics Albert Park.

Lucas Valley-Marinwood

Lucas Valley-Marinwood might not have many top sights, but Marin County Civic Center and Marin County Civic Center Farmers' Market are two attractions nearby that you can check out.

Gerstle Park

While Gerstle Park might not have many sights to explore, venturing just a little farther will lead you to top things to see and do like Mission San Rafael Arcangel and San Rafael Pacifics Albert Park.

Santa Venetia

When in Santa Venetia, you can plan a visit to Marin County Civic Center and Marin County Civic Center Farmers' Market, some noteworthy sights in the nearby area.

Top Southeast San Rafael Hotel Reviews

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina

10/10 Excellent
"Nice staff, clean room "
Noor El Deen 1-night trip
Posted 23 hours ago
DoubleTree by Hilton Hotel Berkeley Marina

Frequently asked questions

What's it like in Southeast San Rafael?
You'll be sure to have fun visiting San Rafael's Southeast San Rafael neighborhood. Looking for sights you might find in a travel guide about Southeast San Rafael? Consider a visit to San Francisco Bay while you're in the neighborhood.
Where is the best place to stay in Southeast San Rafael?
Based on Expedia customer reviews, Extended Stay America Suites San Rafael Francisco Blvd East is the highest ranked property in Southeast San Rafael. This hotel offers free breakfast and in-room kitchens.
If I need to cancel my hotel reservation in Southeast San Rafael, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of your arrival date. If you booked a non-refundable reservation, you might be able to still cancel and receive a refund within a 24-hour period of your booking. Add dates, click "Search", then you can filter by "fully refundable" to get the best options available in Southeast San Rafael.
Where can I learn more about changing or cancelling my trip to Southeast San Rafael?
For more details about changing or cancelling your trip to Southeast San Rafael, go to https://www.expedia.com/service/.
What is there to do around this San Rafael neighborhood?
Popular attractions in Southeast San Rafael include San Francisco Bay. While you're out sightseeing, Marin Country Mart and Larkspur Ferry Terminal are a couple of additional sights to visit in San Rafael.