Nagasaki Prefecture Vacations & Trips from ¥45,228

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Top destinations in Nagasaki Prefecture

An aerial view of a coastal area with clear turquoise waters, rocky shorelines, and surrounding greenery.

Goto

Goto
A brightly lit street with a wooden building adorned with lights and signs, a staircase, and a tree.

Nagasaki

Nagasaki
A coastal city with a harbor, mountains in the background, and dense urban development.

Sasebo

Sasebo
A mountainous landscape with a clear sky.

Tsushima

Tsushima
A serene park with a pond, cherry blossoms, and a distant cityscape.

Omura

Omura
A stone pathway leading uphill with wooden railings, surrounded by lush greenery and a mountainous backdrop.

Unzen

Unzen
A red suspension bridge over a body of water with hills in the background.

Hirado

Hirado
An aerial view of a rural landscape with fields, a small town, and distant mountains.

Isahaya

Isahaya
A cat on a rock near a wooden fence in a rocky outdoor area.

Shimabara

Shimabara

The Latest Nagasaki Prefecture Vacation Packages

Price found within the past 48 hours. Click for updated prices.
Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

Save 100% on your flight
¥45,228
per person
Dec 11 - Dec 13
found 1 day ago
Roundtrip flight included
Osaka (KIX) to Nagasaki (NGS)
8.8/10 Excellent! (1,343 reviews)
Staff services

Reviewed on Aug 2, 2026

Tsuwabuki-no-Hana

Tsuwabuki-no-Hana

Save 100% on your flight
¥132,475
per person
Nov 21 - Nov 23
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
6/10 (1 review)
ROYAL CHESTER NAGASAKI hotel & retreat

ROYAL CHESTER NAGASAKI hotel & retreat

¥95,371
per person
Nov 1 - Nov 3
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8.4/10 Very Good! (78 reviews)
The hotel was lovely with spacious guest rooms with lots of luxurious details. The room lacked practical facilities like a place to put your clothes or suitcases which meant it looked cluttered all the time. The front desk staff were pleasant when they were there but seldom were able to be helpful. We were told that none of the restaurants on the property were open despite their posted hours, there was no option to send out laundry and even that there were no umbrellas available to borrow during a downpour. It was comical after a while! All in all, too much focus on luxury and not enough on the daily details.

Reviewed on Mar 20, 2025

GRAND BASE Nagasaki Chukagai

GRAND BASE Nagasaki Chukagai

Nagasaki Chinatown
Save 100% on your flight
¥83,419
per person
Oct 27 - Oct 29
found 1 day ago
Roundtrip flight included
Tokyo (TYO) to Nagasaki (NGS)
8.4/10 Very Good! (23 reviews)
What a perfect location for experiencing the city of Nagasaki. We were right located near the main area of Nagasaki Chinatown. We were surrounded by convenience stores and a very large number of restaurants either small privately owned to chain restaurants. Just generally shopping galor. There’s an and a very large number of restaurants either small privately owned to chain restaurants. There’s a small fish market right across the bridge. A barber next-door.Although there is no on-site parking, there was more than enough paid parking, which was in a very reasonable cost easily located all around this property. The property itself was again the perfect location. It was clean spacious fully stocked with all of the linens necessary to enjoy your stay. It also has a washing machine which worked out wonderfully for us. A small sitting area living room with a large screen TV next to a kitchenette. We would highly recommend this property for anyone spending time in Nagasaki. Conveniently located to Chinatown downtown the peace park the atomic museum. Five stars all the way.

Reviewed on Mar 27, 2026

URARI TAKEO GARDEN TERRACE SPA RESORTS

URARI TAKEO GARDEN TERRACE SPA RESORTS

¥84,514
per person
Nov 12 - Nov 14
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
8.4/10 Very Good! (44 reviews)

Where to stay in Nagasaki Prefecture

Find the best Nagasaki Prefecture areas and neighborhoods for the activities you enjoy most.Learn more about Nagasaki Prefecture
Learn more about Nagasaki Prefecture

Nagasaki Chinatown

It’s bright and bold and provides an exciting perspective on the city. Walk through this area to experience various businesses and cultural aspects.

Obama Onsen

While there might not be top attractions in Obama Onsen, you can explore the larger area and discover places like Unzen Jigoku Hell and Vidoro Museum.

Dejimamachi

While visiting Dejimamachi, you might make a stop by sights like Nagasaki Dejima and Nagasaki Prefectural Art Museum.

Nagasaki Prefecture Hotel Deals

Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

6 Huis Ten Bosch Sasebo Nagasaki-ken
Fully refundableReserve now, pay when you stay
¥18,909
¥22,880 total
Sep 23 - Sep 24
8.8/10 Excellent! (1,330 reviews)
"Staff services"

Reviewed on Aug 2, 2026

Hotel Nikko Huis Ten Bosch
Hotel Okura JR Huis Ten Bosch

Hotel Okura JR Huis Ten Bosch

10 Huis Ten Bosch cho Sasebo Nagasaki
Fully refundableReserve now, pay when you stay
¥11,910
¥15,304 total
Sep 30 - Oct 1
9.2/10 Wonderful! (1,001 reviews)
"Nice area ws are at the amusement park area"

Reviewed on Sep 17, 2026

Hotel Okura JR Huis Ten Bosch
Belleview Nagasaki Dejima

Belleview Nagasaki Dejima

1-20 Edo-machi Nagasaki Nagasaki
Fully refundable
¥5,951
¥7,201 total
Oct 4 - Oct 5
8.8/10 Excellent! (1,000 reviews)
"A very friendly and wel ome staff and front desk with management care and hospitality. Lool.forward to future booking in a tranquility and peaceful hotel"

Reviewed on Sep 8, 2026

Belleview Nagasaki Dejima
See all 721 properties in Nagasaki Prefecture
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much does a Nagasaki Prefecture vacation package cost?
Choose from any combination of flights, hotels and car rentals, and you can be vacationing in Nagasaki Prefecture from just ¥45,228. And the more you bundle, the more you save. Your dream escape has never been more affordable.
How do I get a cheap travel package to Nagasaki Prefecture?
Just think of all the fun things you could do in Nagasaki Prefecture with a wad of extra cash in your pocket. Watch your savings stack up when you combine your hotel and flights into a Nagasaki Prefecture vacation package. You have loads of choice when you book your trip with Expedia too. In fact, you can choose from more than 550 air carriers and 1,000,000 hotels across the globe. Whether you're heading off with the entire family or surprising your special someone, exploring Nagasaki Prefecture is better with a package.
Where should I stay in Nagasaki Prefecture?
If you've always dreamed of exploring Nagasaki Atomic Bomb Museum and Glover Garden, Nagasaki is calling your name.
What are the top hotels in Nagasaki Prefecture?
Look up Quintessa Hotel Sasebo and Smile Hotel Sasebo. They're the first choice for many travelers headed to Nagasaki. If Sasebo is on your travel itinerary, Toyoko Inn Sasebo Ekimae and Hotel Resol Sasebo are both great options.
How far in advance should I book my Nagasaki Prefecture vacation?
To bag cheap prices, book ASAP. Airlines usually release tickets, along with some of the lowest fares, around a year in advance. Hotels, car rental and activities should also be booked well in advance so you can have the pick of the bunch. If you've decided on a last-minute getaway in Nagasaki Prefecture, there are always plenty of great deals on Expedia. Book your escape today!
What does an Expedia Nagasaki Prefecture travel package include?
That's up to you. You can select from a range of Nagasaki Prefecture bundles, such as a rental car, flight and hotel. You can also book a flight and a hotel, or a rental car with a flight. Once you've made your booking, you can add on the fun stuff like tours and activities. Whatever your Nagasaki Prefecture break looks like, you're sure to save!
What should I know before booking a Nagasaki Prefecture travel package?
A travel package can be easier on the bank balance than separately booking everything you need for your escape. For example, combine your hotels, flights and rental cars and save a packet. Whatever your vacation plans, you're sure to find a package that's perfect for you.
If I'm not able to travel, can I cancel my Nagasaki Prefecture vacation package?
It's difficult to predict what tomorrow might bring, so it's comforting to know that you can change or cancel your Nagasaki Prefecture vacation package. If your booking was made in the last 24 hours, you may be eligible for a refund. If it's an older booking, your airline, hotel or car rental company may charge a fee. Visit our Customer Service Portal for more information.

Stay near popular Nagasaki Prefecture attractions

A canal with a bridge, illuminated buildings, and trees with lights.

Huis Ten Bosch

9.0/10 (984 reviews)
Have a fun-filled day at Huis Ten Bosch and find out why this is a popular theme park in Sasebo. Stroll along the seaside or visit the spas while you're in the area.
See properties
An indoor museum with brick walls, a staircase, and stone statues.

Nagasaki Atomic Bomb Museum

9.0/10 (545 reviews)
The atomic bomb’s shock factor never lessens with time. A walk through this building makes sure it’s not forgotten. Comprehend this horrific event by visiting here.
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A stone pathway leading uphill with wooden railings, surrounded by lush greenery and a mountainous backdrop.

Unzen Jigoku Hell

8.6/10 (113 reviews)
Learn about the local history of Unzen when you take a trip to Unzen Jigoku Hell. Discover the area's volcano viewpoints and countryside.
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A traditional building with a tiled roof, surrounded by a vibrant flower garden.

Glover Garden

8.4/10 (741 reviews)
Climb the hill and be treated to two features: a panoramic city view and estates of wealthy magnates. The harbor activity below is fascinating to watch.
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A traditional Japanese storefront with lanterns, signs, and a menu board.

Shianbashi Alley

7.0/10 (12 reviews)
During your trip to Nagasaki, you can find the perfect gifts to bring home at Shianbashi Alley. Stroll along the waterfront or experience the area's museums.
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A large bronze statue of a seated figure with arms raised, set against a backdrop of a blue sky with clouds and green trees.

Peace Park

8.6/10 (719 reviews)
At this spot, as reverent a place as you can find anywhere, reflect on one of the worst events to happen to humankind and the dire importance of it never being repeated.
See properties

Nagasaki Dejima

8.2/10 (731 reviews)
Learn about the local history of Nagasaki when you take a trip to Nagasaki Dejima. Amble around the area's Chinatown or visit its shops.
See properties

Intuji Port

7.0/10 (6 reviews)
Explore the waterfront in Iki with a trip to Intuji Port. Take in the museums and mountain views in the area.
See properties

What to do in Nagasaki Prefecture

Nagasaki Historical Highlights Private Car Tour With Local Guide

Nagasaki Historical Highlights Private Car Tour With Local Guide

¥18,400
per adult
Nagasaki Historical Highlights Private Car Tour With Local Guide
See all activities in Nagasaki Prefecture

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* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.