Nagasaki Prefecture Vacations & Trips from ￥31,954

Book a Hotel + Flight or Car together to unlock savings

  • Plan, book, travel with confidence

  • Better together

    Save up to ￥45,448 when you book a flight and hotel together*

  • Find the right fit

    With over 300,000 hotels worldwide, it's easy to create a perfect package

  • Rest easy

    Plan, book, and manage your trip all in one place

Top destinations in Nagasaki Prefecture

Nagasaki
FlightsFlightsHotelsHotels

Nagasaki

Nagasaki

The Latest Nagasaki Prefecture Vacation Packages

Price found within the past 48 hours. Click for updated prices.
GRAND BASE Nagasaki Chukagai

GRAND BASE Nagasaki Chukagai

3 out of 5
Nagasaki Chinatown
Save 100% on your flight
Price was ￥53,490, price is now ￥31,954 per person
￥31,954
per person
Jan 19 - Jan 23
found 1 day ago
Roundtrip flight included
Osaka (KIX) to Nagasaki (NGS)
8/10 Very Good! (17 reviews)
Shisekiryokan Kagetsu Taisyokan

Shisekiryokan Kagetsu Taisyokan

3 out of 5
Save 100% on your flight
Price was ￥132,553, price is now ￥79,850 per person
￥79,850
per person
Jan 26 - Jan 28
found 1 day ago
Roundtrip flight included
Kobe (UKB) to Nagasaki (NGS)
8/10 Very Good! (1 review)
Ureshino Yadoya

Ureshino Yadoya

4 out of 5
Save 100% on your flight
Price was ￥300,415, price is now ￥184,173 per person
￥184,173
per person
Feb 15 - Feb 17
found 16 hours ago
Roundtrip flight included
Tokyo (TYO) to Nagasaki (NGS)
9.8/10 Exceptional! (47 reviews)
Excellent hotel, with very hospitable staff. Room is large (for Japan) with large private natural onsen bath. Food was very good, quantity was just right.

Reviewed on Nov 28, 2025

Hotel Nagasaki

Hotel Nagasaki

3 out of 5
Save 100% on your flight
Price was ￥91,149, price is now ￥57,890 per person
￥57,890
per person
Jan 9 - Jan 12
found 1 day ago
Roundtrip flight included
Osaka (KIX) to Nagasaki (NGS)
8.4/10 Very Good! (235 reviews)
This is an amazing. Way exceed my expectation and the service is great. The staff is also very helpful and go extra steps to help.

Reviewed on Jan 7, 2025

Hana No Shizuku

Hana No Shizuku

3.5 out of 5
Save 100% on your flight
Price was ￥98,794, price is now ￥68,582 per person
￥68,582
per person
Feb 6 - Feb 8
found 1 day ago
Roundtrip flight included
Osaka (OSA) to Nagasaki (NGS)
7.8/10 Good! (64 reviews)

Where to stay in Nagasaki Prefecture

Find the best Nagasaki Prefecture areas and neighborhoods for the activities you enjoy most. Learn more about Nagasaki Prefecture
Nagasaki Chinatown showing signage and street scenes

Nagasaki Chinatown

5/5(11 area reviews)

It’s bright and bold and provides an exciting perspective on the city. Walk through this area to experience various businesses and cultural aspects.

Find hotels in Nagasaki Chinatown

Nagasaki Prefecture Hotel Deals

Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

3.5 out of 5
6 Huis Ten Bosch Sasebo Nagasaki-ken
The price is ￥21,328 per night from Dec 10 to Dec 11
￥21,328
￥25,807 total
Dec 10 - Dec 11
8.8/10 Excellent! (1,599 reviews)
If you want to go to Huis Ten Bosch, this hotel is convenient to stay at. Their breakfast was good too. The small store inside this hotel was convenient to buy some snacks and drinks.

Reviewed on Nov 17, 2025

Hotel Nikko Huis Ten Bosch
Hotel Okura JR Huis Ten Bosch

Hotel Okura JR Huis Ten Bosch

4 out of 5
10 Huis Ten Bosch cho Sasebo Nagasaki
Fully refundableReserve now, pay when you stay
The price is ￥16,616 per night from Dec 16 to Dec 17
￥16,616
￥21,351 total
Dec 16 - Dec 17
9.2/10 Wonderful! (1,008 reviews)
Convenient

Reviewed on Oct 25, 2025

Hotel Okura JR Huis Ten Bosch
JR KYUSHU HOTEL Nagasaki

JR KYUSHU HOTEL Nagasaki

3.5 out of 5
1-1, Onouemachi, 1-1 Nagasaki Nagasaki Prefecture
Fully refundableReserve now, pay when you stay
The price is ￥6,791 per night from Dec 23 to Dec 24
￥6,791
￥7,529 total
Dec 23 - Dec 24
8.8/10 Excellent! (599 reviews)
Gave the property a 4 star because the internet was very poor. Other than that Property was excellent.service from front desk to breakfast staff and house keepers very good. Always pleasant with a hello and thank you.

Reviewed on Nov 30, 2025

JR KYUSHU HOTEL Nagasaki
See all 419 properties in Nagasaki Prefecture
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much does a Nagasaki Prefecture vacation package cost?
Choose from any combination of flights, hotels and car rentals, and you can be vacationing in Nagasaki Prefecture from just ￥31,954. And the more you bundle, the more you save. Your dream escape has never been more affordable.
How do I get a cheap travel package to Nagasaki Prefecture?
Just think of all the fun things you could do in Nagasaki Prefecture with a wad of extra cash in your pocket. Watch your savings stack up when you combine your hotel and flights into a Nagasaki Prefecture vacation package. You have loads of choice when you book your trip with Expedia too. In fact, you can choose from more than 550 air carriers and 1,000,000 hotels across the globe. Whether you're heading off with the entire family or surprising your special someone, exploring Nagasaki Prefecture is better with a package.
Where should I stay in Nagasaki Prefecture?
If you've always dreamed of exploring Nagasaki Atomic Bomb Museum and Glover Garden, Nagasaki is calling your name.
What are the top hotels in Nagasaki Prefecture?
Look up Quintessa Hotel Sasebo and Smile Hotel Sasebo. They're the first choice for many travelers headed to Nagasaki. If Sasebo is on your travel itinerary, Toyoko Inn Sasebo Ekimae and Hotel Resol Sasebo are both great options.
How far in advance should I book my Nagasaki Prefecture vacation?
To bag cheap prices, book ASAP. Airlines usually release tickets, along with some of the lowest fares, around a year in advance. Hotels, car rental and activities should also be booked well in advance so you can have the pick of the bunch. If you've decided on a last-minute getaway in Nagasaki Prefecture, there are always plenty of great deals on Expedia. Book your escape today!
What does an Expedia Nagasaki Prefecture travel package include?
That's up to you. You can select from a range of Nagasaki Prefecture bundles, such as a rental car, flight and hotel. You can also book a flight and a hotel, or a rental car with a flight. Once you've made your booking, you can add on the fun stuff like tours and activities. Whatever your Nagasaki Prefecture break looks like, you're sure to save!
What should I know before booking a Nagasaki Prefecture travel package?
A travel package can be easier on the bank balance than separately booking everything you need for your escape. For example, combine your hotels, flights and rental cars and save a packet. Whatever your vacation plans, you're sure to find a package that's perfect for you.
If I'm not able to travel, can I cancel my Nagasaki Prefecture vacation package?
It's difficult to predict what tomorrow might bring, so it's comforting to know that you can change or cancel your Nagasaki Prefecture vacation package. If your booking was made in the last 24 hours, you may be eligible for a refund. If it's an older booking, your airline, hotel or car rental company may charge a fee. Visit our Customer Service Portal for more information.

Discover the most popular places to visit in Nagasaki Prefecture

Huis Ten Bosch

Huis Ten Bosch

4.5/5(9 reviews)

Have a fun-filled day at Huis Ten Bosch and find out why this is a popular theme park in Sasebo. Stroll along the seaside or visit the spas while you're in the area.

Huis Ten Bosch
Glover Garden

Glover Garden

4.5/5(16 reviews)

Climb the hill and be treated to two features: a panoramic city view and estates of wealthy magnates. The harbor activity below is fascinating to watch.

Glover Garden
This place is located at Unzen of Nagasaki. The hot spring here is a tourist attraction. Scent of sulfur and hot steam is encountered everywhere.

Unzen Jigoku Hell

4.5/5(3 reviews)

Learn about the local history of Unzen when you take a trip to Unzen Jigoku Hell. Discover the area's volcano viewpoints and countryside.

Unzen Jigoku Hell

What to do in Nagasaki Prefecture

Beach picnic set

Beach picnic set

￥2,564
per traveler
Beach picnic set
Gunkanjima Digital Museum Attraction Ticket

Gunkanjima Digital Museum Attraction Ticket

￥1,865
per adult
Gunkanjima Digital Museum Attraction Ticket
Easy Beach Set

Easy Beach Set

￥4,103
per traveler
Easy Beach Set
See all activities in Nagasaki Prefecture

Other vacations you might like

* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.