Nagasaki Prefecture Vacations & Trips from ¥41,769

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Top destinations in Nagasaki Prefecture

An aerial view of a coastal area with clear turquoise waters, rocky shorelines, and surrounding greenery.

Goto

Goto
A brightly lit street with a wooden building adorned with lights and signs, a staircase, and a tree.

Nagasaki

Nagasaki
A coastal city with a harbor, mountains in the background, and dense urban development.

Sasebo

Sasebo
A mountainous landscape with a clear sky.

Tsushima

Tsushima
A coastal landscape with rocky cliffs and a clear view of the ocean.

Iki

Iki
A serene park with a pond, cherry blossoms, and a distant cityscape.

Omura

Omura
A stone pathway leading uphill with wooden railings, surrounded by lush greenery and a mountainous backdrop.

Unzen

Unzen
A red suspension bridge over a body of water with hills in the background.

Hirado

Hirado
An aerial view of a rural landscape with fields, a small town, and distant mountains.

Isahaya

Isahaya

The Latest Nagasaki Prefecture Vacation Packages

Price found within the past 48 hours. Click for updated prices.
HOTEL FLAGS KUJUKUSHIMA

HOTEL FLAGS KUJUKUSHIMA

Save 100% on your flight
¥41,769
per person
Sep 26 - Sep 30
found 2 hours ago
Roundtrip flight included
Osaka (OSA) to Nagasaki (NGS)
8/10 Very Good! (170 reviews)
Hotel staff was very friendly on check-in, lobby area very clean and neat, but dates some, especially including look of mix of furniture in lobby lounge area. Room was small, however nicely appointed with all I needed. The hallways of the hotel were immaculate and sparkled. The bathroom was very clean, however the room itself needed a serious deep edge-vacuuming. Dust could be seen along the edges of room and under the nightstand opening at the floor. Breakfast buffet offered multiple choices, included hot breakfast with Japanese options and continental options. Very nice breakfast. Onsen was very enjoyable and seemed to be kept very clean as well. Slippers and house clothes provided were not available for "larger" guests, but provided for average sized - one size fits most. Not the highest quality, but nice touch. Hotel provides a free hourly shuttle during day to downtown train station. Very convenient to go shopping, lunching, or to depart on train. As a side note, the hotel is a wedding destination hotel and specializes in large events. It is also located directly across from a small marina with attractions and restaurants.

Reviewed on Mar 18, 2025

Tsuwabuki-no-Hana

Tsuwabuki-no-Hana

Save 100% on your flight
¥132,700
per person
Oct 28 - Oct 31
found 1 day ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
6/10 (1 review)
Garden Terrace Nagasaki Hotels & Resorts

Garden Terrace Nagasaki Hotels & Resorts

Save 100% on your flight
¥67,774
per person
Nov 16 - Nov 18
found 5 hours ago
Roundtrip flight included
Tokyo (HND) to Nagasaki (NGS)
9.4/10 Exceptional! (98 reviews)
Je risque de manquer de superlatifs tant le séjour s’est bien passé. Une seule envie, pouvoir retourner là bas un jour

Reviewed on Aug 8, 2026

Ureshino Yadoya

Ureshino Yadoya

Save 100% on your flight
¥95,498
per person
Oct 10 - Oct 12
found 1 day ago
Roundtrip flight included
Osaka (OSA) to Nagasaki (NGS)
9.8/10 Exceptional! (71 reviews)
Outstanding

Reviewed on Jun 20, 2026

Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

¥48,020
per person
Oct 10 - Oct 12
found 1 day ago
Roundtrip flight included
Osaka (OSA) to Nagasaki (NGS)
8.8/10 Excellent! (1,463 reviews)
Staff services

Reviewed on Aug 2, 2026

Where to stay in Nagasaki Prefecture

Find the best Nagasaki Prefecture areas and neighborhoods for the activities you enjoy most.Learn more about Nagasaki Prefecture
Learn more about Nagasaki Prefecture

Nagasaki Chinatown

It’s bright and bold and provides an exciting perspective on the city. Walk through this area to experience various businesses and cultural aspects.

Obama Onsen

While there might not be top attractions in Obama Onsen, you can explore the larger area and discover places like Unzen Jigoku Hell and Vidoro Museum.

Dejimamachi

While visiting Dejimamachi, you might make a stop by sights like Nagasaki Dejima and Nagasaki Prefectural Art Museum.

Nagasaki Prefecture Hotel Deals

Hotel Nikko Huis Ten Bosch

Hotel Nikko Huis Ten Bosch

6 Huis Ten Bosch Sasebo Nagasaki-ken
Fully refundableReserve now, pay when you stay
¥13,488
¥16,321 total
Sep 1 - Sep 2
8.8/10 Excellent! (1,421 reviews)
"Staff services"

Reviewed on Aug 2, 2026

Hotel Nikko Huis Ten Bosch
Hotel Okura JR Huis Ten Bosch

Hotel Okura JR Huis Ten Bosch

10 Huis Ten Bosch cho Sasebo Nagasaki
Fully refundableReserve now, pay when you stay
¥12,806
¥16,200 total
Sep 1 - Sep 2
9.2/10 Wonderful! (1,008 reviews)
"Mind blown by this place. What is at your disposal for the price is unbelievable."

Reviewed on Jul 9, 2026

Hotel Okura JR Huis Ten Bosch
STADIUM CITY HOTEL NAGASAKI

STADIUM CITY HOTEL NAGASAKI

7-1 Nagasaki Nagasakikenn
Fully refundableReserve now, pay when you stay
¥15,529
¥17,484 total
Aug 27 - Aug 28
9.4/10 Exceptional! (280 reviews)
"Wonderful hotel. Rooms terrific, very spacious. Some rooms overlooking the football stadium. Loved watching them relay the new turf for the upcoming football season. Great restaurants, bit pricey, but you’ll enjoy eating at “eggs n things”. Tram station just outside the hotel - easy ride to the places ..."

Reviewed on Jul 28, 2026

STADIUM CITY HOTEL NAGASAKI
See all 492 properties in Nagasaki Prefecture
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

How much does a Nagasaki Prefecture vacation package cost?
Choose from any combination of flights, hotels and car rentals, and you can be vacationing in Nagasaki Prefecture from just ¥41,769. And the more you bundle, the more you save. Your dream escape has never been more affordable.
How do I get a cheap travel package to Nagasaki Prefecture?
Just think of all the fun things you could do in Nagasaki Prefecture with a wad of extra cash in your pocket. Watch your savings stack up when you combine your hotel and flights into a Nagasaki Prefecture vacation package. You have loads of choice when you book your trip with Expedia too. In fact, you can choose from more than 550 air carriers and 1,000,000 hotels across the globe. Whether you're heading off with the entire family or surprising your special someone, exploring Nagasaki Prefecture is better with a package.
Where should I stay in Nagasaki Prefecture?
If you've always dreamed of exploring Nagasaki Atomic Bomb Museum and Glover Garden, Nagasaki is calling your name.
What are the top hotels in Nagasaki Prefecture?
Look up Quintessa Hotel Sasebo and Smile Hotel Sasebo. They're the first choice for many travelers headed to Nagasaki. If Sasebo is on your travel itinerary, Toyoko Inn Sasebo Ekimae and Hotel Resol Sasebo are both great options.
How far in advance should I book my Nagasaki Prefecture vacation?
To bag cheap prices, book ASAP. Airlines usually release tickets, along with some of the lowest fares, around a year in advance. Hotels, car rental and activities should also be booked well in advance so you can have the pick of the bunch. If you've decided on a last-minute getaway in Nagasaki Prefecture, there are always plenty of great deals on Expedia. Book your escape today!
What does an Expedia Nagasaki Prefecture travel package include?
That's up to you. You can select from a range of Nagasaki Prefecture bundles, such as a rental car, flight and hotel. You can also book a flight and a hotel, or a rental car with a flight. Once you've made your booking, you can add on the fun stuff like tours and activities. Whatever your Nagasaki Prefecture break looks like, you're sure to save!
What should I know before booking a Nagasaki Prefecture travel package?
A travel package can be easier on the bank balance than separately booking everything you need for your escape. For example, combine your hotels, flights and rental cars and save a packet. Whatever your vacation plans, you're sure to find a package that's perfect for you.
If I'm not able to travel, can I cancel my Nagasaki Prefecture vacation package?
It's difficult to predict what tomorrow might bring, so it's comforting to know that you can change or cancel your Nagasaki Prefecture vacation package. If your booking was made in the last 24 hours, you may be eligible for a refund. If it's an older booking, your airline, hotel or car rental company may charge a fee. Visit our Customer Service Portal for more information.

Stay near popular Nagasaki Prefecture attractions

A canal with a bridge, illuminated buildings, and trees with lights.

Huis Ten Bosch

9.0/10 (984 reviews)
Bring the family to Huis Ten Bosch and enjoy the excitement of this theme park in Sasebo. Stroll along the seaside or visit the spas while you're in the area.
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A stone pathway leading uphill with wooden railings, surrounded by lush greenery and a mountainous backdrop.

Unzen Jigoku Hell

8.6/10 (113 reviews)
Learn about the local history of Unzen when you take a trip to Unzen Jigoku Hell. Discover the area's volcano viewpoints and countryside.
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An indoor museum with brick walls, a staircase, and stone statues.

Nagasaki Atomic Bomb Museum

9.0/10 (545 reviews)
The atomic bomb’s shock factor never lessens with time. A walk through this building makes sure it’s not forgotten. Comprehend this horrific event by visiting here.
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A metal sculpture with a leaf pattern and a stone monument with Chinese characters.

Peace Park

8.6/10 (719 reviews)
At this spot, as reverent a place as you can find anywhere, reflect on one of the worst events to happen to humankind and the dire importance of it never being repeated.
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A garden with a pond, flower beds, and a traditional building.

Glover Garden

8.4/10 (741 reviews)
Climb the hill and be treated to two features: a panoramic city view and estates of wealthy magnates. The harbor activity below is fascinating to watch.
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A narrow street lined with shops and signs, including a flower shop and a restaurant.

Shianbashi Alley

7.0/10 (12 reviews)
During your trip to Nagasaki, you can find the perfect gifts to bring home at Shianbashi Alley. Stroll along the waterfront or experience the area's museums.
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Nagasaki Dejima

8.2/10 (731 reviews)
Learn about the local history of Nagasaki when you take a trip to Nagasaki Dejima. Amble around the area's Chinatown or visit its shops.
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Intuji Port

7.0/10 (6 reviews)
Explore the waterfront in Iki with a trip to Intuji Port. Take in the museums and mountain views in the area.
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What to do in Nagasaki Prefecture

eSIM: Airalo Japan Package

eSIM: Airalo Japan Package

¥559
per traveler
eSIM: Airalo Japan Package
Gunkanjima Digital Museum Attraction Ticket

Gunkanjima Digital Museum Attraction Ticket

¥1,865
per adult
Gunkanjima Digital Museum Attraction Ticket
See all activities in Nagasaki Prefecture

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* Savings based on package bookings compared to the price of the same components booked separately. Savings not available on all packages.