An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,502 reviews)
"We have stayed here before, good location, clean rooms, great staff."
United States
Lance
The price is ¥51,467
¥67,690 total
includes taxes & fees
Aug 2 - Aug 3
San Diego Mission Bay Resort

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,700 reviews)
"This was a beautiful place to stay. Right by the water, staff was very helpful, restaurant's were good"
United States
Myesha
The price is ¥47,627
¥63,283 total
includes taxes & fees
Jul 7 - Jul 8
Paradise Point Resort & Spa

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,629 reviews)
"Amazing place!"
United States
Yesenia
The price is ¥43,400
¥58,422 total
includes taxes & fees
Jul 7 - Jul 8
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,384 reviews)
"Beautiful property, very helpful staff, great location"
United States
Jamie
The price is ¥41,787
¥52,669 total
includes taxes & fees
Jul 6 - Jul 7
The Dana on Mission Bay

Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4 km from Mission Bay
8.4 out of 10, Very Good, (1,027 reviews)
"great stay"
United States
David
The price is ¥19,683
¥22,682 total
includes taxes & fees
Jul 27 - Jul 28
Crowne Plaza San Diego - Mission Valley by IHG

Valli Hi Motel

Valli Hi Motel
2.5 star property
28.8 km from Mission Bay
8.4 out of 10, Very Good, (1,026 reviews)
"Great place to stay."
United States
Allan
The price is ¥13,657
¥15,561 total
includes taxes & fees
Jul 7 - Jul 8
Valli Hi Motel

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very Good, (3,531 reviews)
"Great location and shuttle service to and from the airport."
Canada
Malinda
The price is ¥32,107
¥45,066 total
includes taxes & fees
Jul 7 - Jul 8
Sheraton San Diego Resort

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.2 out of 10, Good, (1,597 reviews)
"Great stay"
United States
Alyssa
The price is ¥11,687
¥13,434 total
includes taxes & fees
Jul 5 - Jul 6
Heritage Inn San Diego

Lafayette Hotel & Club

Lafayette Hotel & Club
4.0 star property
8.1 km from Mission Bay
9.4 out of 10, Exceptional, (1,775 reviews)
"Beautiful hotel"
United States
Cuauhtemoc
The price is ¥41,787
¥48,032 total
includes taxes & fees
Jul 6 - Jul 7
Lafayette Hotel & Club

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,075 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is ¥25,814
¥29,672 total
includes taxes & fees
Jul 6 - Jul 7
Holiday Inn Express San Diego Airport - Old Town by IHG

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very Good, (6,237 reviews)
"Great place to stay if visiting san diego recommend"
United States
Carlos
The price is ¥25,096
¥34,713 total
includes taxes & fees
Jul 28 - Jul 29
Wyndham San Diego Bayside

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
5 km from Mission Bay
9.2 out of 10, Wonderful, (1,293 reviews)
"Was a lovely stay and it overlooks the water."
United States
Kara
The price is ¥31,447
¥36,146 total
includes taxes & fees
Jul 9 - Jul 10
Courtyard by Marriott San Diego Airport/Liberty Station

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,162 reviews)
"Clean room, staff was very helpful, parking was easy and accessible!"
United States
Hector
The price is ¥20,813
¥23,924 total
includes taxes & fees
Aug 3 - Aug 4
Wyndham Garden San Diego Near SeaWorld

Hotel Z

Hotel Z
3.0 star property
Gaslamp Quarter, 9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,042 reviews)
"Awesome location"
United States
Torin
The price is ¥19,264
¥27,943 total
includes taxes & fees
Jul 7 - Jul 8
Hotel Z

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,211 reviews)
"THE BED WAS SO SOFT ROOM WAS SO CLEAN BREAKFAST WAS GREAT AND THE PRICE WAS KILLER FOR THE LOCATION really a great place to stay"
United States
Tyson
The price is ¥22,086
¥25,386 total
includes taxes & fees
Jul 9 - Jul 10
GreenTree Inn San Diego Mission Bay

The Alcala Hotel Mission Valley/Seaworld

The Alcala Hotel Mission Valley/Seaworld
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very Good, (327 reviews)
"Staff was great and rooms were nice."
United States
Brittney
The price is ¥17,035
¥19,580 total
includes taxes & fees
Jul 6 - Jul 7
The Alcala Hotel Mission Valley/Seaworld

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
7 km from Mission Bay
9.0 out of 10, Wonderful, (1,587 reviews)
"Clean room staff very helpful and friendly Enjoyed pool and bar was great"
United States
Beach To
The price is ¥25,943
¥29,821 total
includes taxes & fees
Jul 20 - Jul 21
Best Western Plus Island Palms Hotel & Marina

La Jolla Shores Hotel

La Jolla Shores Hotel
3.0 star property
9.3 km from Mission Bay
8.8 out of 10, Excellent, (1,333 reviews)
"Nice beach view, helpful staff, clean property."
United States
Edgardo
The price is ¥42,444
¥58,085 total
includes taxes & fees
Jul 7 - Jul 8
La Jolla Shores Hotel

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.8 out of 10, Excellent, (2,213 reviews)
"Beachfront rooms were great."
United States
Jon
The price is ¥43,417
¥58,845 total
includes taxes & fees
Jul 7 - Jul 8
Bahia Resort Hotel

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,702 reviews)
"Loved my stay there."
United States
Teresa
The price is ¥28,620
¥32,899 total
includes taxes & fees
Jul 7 - Jul 8
Bay Club Hotel & Marina
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Dip your toes in the water at Mission and Pacific Beaches or Ski Beach while you're in Mission Bay. You could also plan a visit to Mission Bay or Marina Village Conference Center while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, Crown Point Shores and North Cove Beach are also worth a stop.