Default HTG hotel image

Find hotels in San Juan Bautista from ￥2,270

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
Sep 13 - Sep 14
Tomorrow
Sep 14 - Sep 15
Next weekend
Sep 18 - Sep 20
In two weeks
Sep 25 - Sep 27

Filter by

Property class

Guest rating

Our top choices for San Juan Bautista hotels

A modern hallway with a red sofa, a wooden door, and a green pillar.
A room with a television displaying 'Hospedaje Las Amazonas' and a table with a white teapot and cup.
A multi-story building with a green base and red accents, featuring balconies and air conditioning units.
A modern hallway with a red sofa, a green pillar, and a wooden door.

1. Hospedaje Las Amazonas

Hospedaje Las Amazonas
San Juan Bautista
United States
Mircea
￥2,535
￥2,535 total
Sep 14 - Sep 15
Hospedaje Las Amazonas
A building surrounded by dense tropical foliage, with a white exterior and large windows.
A spacious restaurant with high ceilings, large windows, and a rustic metal roof. Tables are arranged for dining, and there are ceiling fans and a TV mounted on the wall.
A bedroom with a bed, a wooden headboard, a staircase, and a mirror.

2. Amazon Lodge Varillal

Amazon Lodge Varillal
San Juan Bautista
￥5,779
￥5,779 total
Sep 14 - Sep 15
Amazon Lodge Varillal
A wooden deck with railings leading to a pool area, surrounded by lush greenery.
A bed with a blue and white bedspread, two pillows, and a decorative pillow with a red leaf design. There are towels folded on the bed and a small table with a cup and a tissue box.
A wooden building with a door labeled "Joe," a mural of a hummingbird and flowers, and a wooden bench outside.
A swimming pool with a person in the water, surrounded by lush greenery and a palm tree.

3. Pura Chata Ecolodge

Pura Chata Ecolodge
San Juan Bautista
￥13,239
￥13,239 total
Sep 24 - Sep 25
Pura Chata Ecolodge
A wooden rocking chair and a table with a mug under a thatched roof structure, overlooking a pond and lush greenery.
A thatched-roof structure surrounded by dense tropical foliage.
A kitchen with wooden cabinets, a sink, and various kitchen utensils.
A forested path with a dirt trail, surrounded by dense green foliage and trees.

4. Amaca Eco Station

Amaca Eco Station
San Juan Bautista
￥6,371
￥6,371 total
Sep 21 - Sep 22
Amaca Eco Station
A covered outdoor area with a wooden floor leading to a garden. There are potted plants and a chair.
A building with a clock tower, surrounded by lush greenery and a covered outdoor area.
A room with a whiteboard filled with handwritten notes, a wooden door, and a small table with a plant.
A person seated at a round table with a potted plant, in a room with wooden beams and a sloped ceiling.

5. La Casa del Paucar

La Casa del Paucar
Iquitos City Center
United States
Hunter
￥3,414
￥3,414 total
Sep 14 - Sep 15
La Casa del Paucar
An indoor swimming pool with a rock wall, seating area, and umbrellas.
A modern building with a staircase leading to an upper level, a glass entrance, and a well-lit exterior at night.
A hotel room with a large bed, a headboard, a bedside table with a lamp, a framed artwork on the wall, and a window with a view of the sky.
A dining table set with plates, cutlery, and wine glasses, with a bottle and salt shaker in the center.

6. El Dorado Classic Hotel

El Dorado Classic Hotel
Iquitos City Center
Canada
jorge moreno
￥5,358
￥6,661 total
Oct 1 - Oct 2
El Dorado Classic Hotel
A traditional wooden house with a thatched roof, surrounded by lush greenery.
A restaurant setting with a chef preparing food at the counter, a table with various dishes and drinks, and a view of greenery outside.
A room with two beds, a wooden floor, a ceiling fan, and a view of greenery outside.
A thatched-roof structure with a wooden platform, surrounded by greenery.

7. Muyuna Lodge

Muyuna Lodge
Fernando Lores
United Kingdom
Lorna
￥99,539
￥99,539 total
Oct 4 - Oct 5
Muyuna Lodge
A neatly made bed with a wooden headboard, a small bedside table with a plant, and a view of a balcony with potted plants.
A reception area with a wooden reception desk, two potted plants, a white bench, and a door leading outside.
A restaurant with a kitchen area, dining tables, chairs, and potted plants.
A compact kitchen with wooden cabinets, a refrigerator, a microwave, and a small dining area with two chairs and a table.

8. Studio 69

Studio 69
Iquitos City Center
Canada
Julie
￥4,977
￥4,977 total
Sep 14 - Sep 15
Studio 69
A hotel room with two beds, each with a zebra-patterned blanket, a red accent wall, and a white ceiling.
A reception area with a glass wall, a fan, and a seating area.
A reception area with a glass wall, a fan, and a seating area.
A hotel room with two beds, a red wall, a window with curtains, and a desk with a chair.

9. HOTEL SELVA

HOTEL SELVA
Iquitos
United States
Jose
￥2,270
￥2,270 total
Oct 14 - Oct 15
HOTEL SELVA
A room with a wooden shelf holding various items, a window with curtains, a table with chairs, and several potted plants.
A living room with an orange sofa, a small round table, and two paintings on the wall.
A garden with a rock formation, a Star of David, and various plants.
The exterior of La Casona Hotel with a stone facade, wooden entrance doors, and a sign above the entrance.

10. Hotel La Casona

Hotel La Casona
Iquitos City Center
United States
Felipe
￥5,473
￥5,473 total
Sep 14 - Sep 15
Hotel La Casona
A group of people seated at a table with food and drinks, in a room with a wooden wall and a window.
A building with two blue doors, one with a sign indicating a men's and women's restroom.
A rustic building with a thatched roof and a sign reading 'R TOUR.'
A room with two beds, wooden flooring, and a window with a view.

11. ayatur lodge iquitos

ayatur lodge iquitos
Fernando Lores
￥11,198
￥11,198 total
Sep 14 - Sep 15
ayatur lodge iquitos
A breakfast table with plates of food, a coffee cup, and glasses of orange juice.
A hotel room with two beds, a wooden headboard, a small bedside table, a nightstand, an air conditioner, and a ceiling fan.
A kitchen with a stove, oven, and cabinets, a dining table with chairs, and a ceiling fan.
A staircase with a metal railing, a ceiling fan, and a chandelier. There are potted plants and framed artwork on the walls.

12. Alojamiento El Cardenal

Alojamiento El Cardenal
Iquitos
United States
Corona
￥4,745
￥4,745 total
Sep 16 - Sep 17
Alojamiento El Cardenal
A spacious lobby with a modern design, featuring a large sectional sofa, a coffee table, and several potted plants.
A poolside area with lounge chairs, a table, and string lights.
A restaurant interior with a wooden ceiling, striped wall, bar area, seating, and a TV screen.
An outdoor seating area with string lights, chairs, and a table.

13. Victoria Regia Hotel

Victoria Regia Hotel
Iquitos City Center
United States
Wily
￥10,581
￥10,581 total
Oct 1 - Oct 2
Victoria Regia Hotel
A dining area with wooden chairs and tables, a person standing near a wall with framed pictures, and a large window with a view.
A person seated by a window with potted plants, overlooking a building with a red roof.
A hotel room with a wooden bed, a nightstand, a wooden wardrobe, and a painting on the wall.
A hallway with wooden paneling, a hanging light fixture, and a door with a geometric pattern.

14. Hotel Yagua Iquitos

Hotel Yagua Iquitos
Iquitos City Center
United Kingdom
Iarlaith
￥5,494
￥5,494 total
Sep 20 - Sep 21
Hotel Yagua Iquitos
A hotel with a swimming pool, outdoor seating, and a staircase leading to the upper level.
A reception desk with a sign that reads "CASA BLANCA HOTEL & RESTAURANTE" and a logo for "VERDE CONFORT".
The entrance of Casa Blanca Hotel & Restaurante with a covered entrance and multiple flags.
A spacious living room with a large painting of a cityscape, a bookshelf filled with books, and a modern ceiling fan.

15. CASA BLANCA HOTEL

CASA BLANCA HOTEL
Morona Cocha
United States
Miguel
￥5,508
￥7,335 total
Sep 16 - Sep 17
CASA BLANCA HOTEL
A hotel entrance with a glass door, a reception desk, and a sign reading "El Dorado Express".
A hotel room with two beds, a desk, a chair, a TV, and a bathroom visible through an open door.
A modern living room with a brown sofa, two wicker chairs, a glass coffee table, and a wooden cabinet.
A breakfast table with a plate of food, a glass of orange juice, a basket of bread, and a coffee maker.

16. El Dorado Express Hotel

El Dorado Express Hotel
Iquitos City Center
United States
Daniel
￥4,524
￥5,433 total
Sep 23 - Sep 24
El Dorado Express Hotel
A wooden room with a bed, a window, and a door with frosted glass panels.
A building with a large garage door, patterned walls, and a concrete ground.
A wooden interior with a large window, wooden shelves, and a slanted ceiling.
A wooden structure with a covered porch, multiple windows, and a staircase leading to an upper level.

17. Retazos Eco Hotel

Retazos Eco Hotel
Iquitos
United States
Jillmar
￥5,422
￥5,422 total
Sep 14 - Sep 15
Retazos Eco Hotel
A hallway with artificial grass, potted plants, a teal door, and a large leopard mural.
A balcony with two chairs and a small stool, overlooking a busy street with motorcycles and tricycles.
A group of people dining at a table with a variety of food items and drinks, a television mounted on the wall, and a poster advertising jungle tours.
A hallway with artificial grass, wooden flooring, potted plants, and a desk with a computer.

18. AT Amazon Backpacker

AT Amazon Backpacker
Iquitos City Center
￥4,145
￥4,145 total
Sep 28 - Sep 29
AT Amazon Backpacker
A compact living space with a sofa, a television mounted on the wall, a window with red curtains, and a kitchenette with wooden cabinets.
A kitchen with a built-in counter, wooden cabinets, and a tiled floor. There is a dining area with a table and chairs, and a red sofa.
A compact kitchen with wooden cabinets, a stainless steel refrigerator, a microwave, and a sink.
A bedroom with a bed, a chair, a television, and a door.

19. BELLO ORIENTE

BELLO ORIENTE
Iquitos
￥6,221
￥6,221 total
Sep 14 - Sep 15
BELLO ORIENTE
Three bottles of Double Black whiskey on a table with a promotional display.
A hotel with a modern facade, a signboard displaying the word "HOTEL," and a variety of national flags hanging outside.
Two single beds with white linens, a nightstand, and wall-mounted lights.
A spacious, modern hotel lobby with a reception desk, seating area, and large windows.

20. Hotel Embassy Suites

Hotel Embassy Suites
Nauta
￥5,919
￥5,919 total
Sep 21 - Sep 22
Hotel Embassy Suites
View all properties
Save an average of 15% on thousands of hotels when you're signed in

Where to stay in San Juan Bautista

Find the best San Juan Bautista areas and neighborhoods for the activities you enjoy most.

AA.HH. El Castañal

Though AA.HH. El Castañal might not have many top sights, you can venture to the surrounding area to see attractions like Plaza José Abelardo Quiñones and Allpahuayo Mishana Bed & Trees.

Stay near popular San Juan Bautista attractions

Plaza José Abelardo Quiñones

8.4/10 (9 reviews)
Explore the great outdoors at Plaza José Abelardo Quiñones, a lovely green space in San Juan Bautista.
See properties

Quistococha Lake

8.0/10 (16 reviews)
Explore the great outdoors at Quistococha Lake, a lovely green space in San Juan Bautista. While you're in the area, stroll along the riverfront.
See properties

Amazon Rescue Center

8.8/10 (6 reviews)
Enjoy an outing to Amazon Rescue Center during your stay in Varillal.
See properties

Mall Aventura

You can enjoy retail therapy at Mall Aventura during your trip to San Juan Bautista.
See properties

El Encanto de Laguna Waterpark

8.0/10 (3 reviews)
Explore the great outdoors at El Encanto de Laguna Waterpark, a lovely green space in San Juan Bautista.
See properties

Aquarium of the Amazon

Take the kids to visit the sea creatures at Aquarium of the Amazon during your trip to San Juan Bautista.
See properties

Laguna Quistacocha

Find out about the history of San Juan Bautista with a stop at Laguna Quistacocha. While you're in the area, stroll along the riverfront.
See properties

Amazon Golf Course

8.0/10 (3 reviews)
Enjoy a round of golf in San Juan Bautista at Amazon Golf Course. While you're in the area, stroll along the riverfront.
See properties

Top San Juan Bautista Hotel Reviews

El Dorado Classic Hotel

El Dorado Classic Hotel

10/10 Excellent
"Bar"
WALTER RODRIGO 6-night trip
Posted 3 days ago
El Dorado Classic Hotel
Hotel de Turistas Iquitos

Hotel de Turistas Iquitos

8/10 Good
"We got there early and asked for early check in, (paying), unwilling to accomadate. Aside from that the staff were very nice, room was clean. Breakfast was good."
Jensee 1-night trip
Posted 5 days ago
Hotel de Turistas Iquitos
Victoria Regia Hotel

Victoria Regia Hotel

8/10 Good
"Overall a nice hotel, with friendly staff however staff had no knowledge of the Expedia VIP offering and didn’t really understand it. I was also in a room facing the street and the windows may as well have been open as the noise from outside was really loud throughout the evening and night"
Lauren 1-night trip
Posted 6 days ago
Victoria Regia Hotel
Studio 69

Studio 69

10/10 Excellent
"The 7am breakfast doesn't start until 7:20"
Kevin 1-night trip
Posted 9 days ago
Studio 69
Apart Hotel Casa Morey

Apart Hotel Casa Morey

10/10 Excellent
"A historic gem! The building is old but the AC is not! Thank goodness. felt refreshing after exploring the city The pool was conveniently right outside our door"
evelyn 1-night trip
Posted 2 weeks ago
Apart Hotel Casa Morey
Poseidon Guest House

Poseidon Guest House

10/10 Excellent
"We had a much delayed flight, arriving to Iquitos after midnight, but Wilson was waiting there to pick us up! That was very much appreciated after the flight stress/troubles. He gave us a free (very short) ride to the hotel, where he said we didn’t have to do the checkin/payment until next day since we wanted to get sleep. The room was clean and spacious and the shower water was hot. We had a deep sleep. Next morning, breakfast was ready at the requested time and was tasty eggs and bread with fresh juice. Dining area was clean and homey. Checkin/Checkout with Wilson was seamless and quick! Thought we didn’t have much time to experience the hotel, it was a wonderful stay."
Kevin 1-night trip
Posted 4 months ago
Poseidon Guest House

More cheap stays in San Juan Bautista

HOTEL SELVA

HOTEL SELVA

1024 Av. Grau Iquitos Loreto
￥2,270
￥2,270 total
Oct 14 - Oct 15
HOTEL SELVA
Casa del Jaguar

Casa del Jaguar

Calle Jaen Iquitos Loreto
￥3,110
￥3,110 total
Sep 14 - Sep 15
10/10 Exceptional! (1 review)
Casa del Jaguar
Studio 69

Studio 69

Jr. Pevas 669 Iquitos Loreto
￥4,977
￥4,977 total
Sep 14 - Sep 15
9.2/10 Wonderful! (86 reviews)
Studio 69
Hotel La Casona

Hotel La Casona

Avenida Fitzcarrald 147 Iquitos Loreto
￥5,473
￥5,473 total
Sep 14 - Sep 15
Hotel La Casona
Amazon Lodge Varillal

Amazon Lodge Varillal

Carretera Iquitos Nauta 137 km San Juan Bautista Iquitos
￥5,779
￥5,779 total
Sep 14 - Sep 15
Amazon Lodge Varillal
La Posada Del Cauchero Hotel & Suites

La Posada Del Cauchero Hotel & Suites

449 Antonio Raimondi Iquitos Loreto
￥7,925
￥7,925 total
Sep 17 - Sep 18
8.8/10 Excellent! (12 reviews)
La Posada Del Cauchero Hotel & Suites

Frequently asked questions

What's the best place to stay in San Juan Bautista?
Based on our traveler data, Amazon Lodge Varillal is one of the top choices for your stay. This hotel offers 2 restaurants and free breakfast. Other good choices for your stay include Hospedaje Las Amazonas and Hotel Sombrero de Paja. See all available top hotels, or vacation rentals in San Juan Bautista.
What's the top vacation rental in San Juan Bautista?
Iquitos Lodge House by the River. Enjoy the views & sound of the Amazon: This highly rated vacation home rental in San Juan Bautista offers an outdoor pool, a garden, and a barbecue grill to help you feel perfectly comfortable in your new surroundings. It has 5 bedrooms as well as a kitchen with a fridge, a stovetop, and a microwave, so you can cook with friends or family. See all vacation rentals in San Juan Bautista.
If I need to cancel my hotel reservation in San Juan Bautista, will I receive a refund?
Yes! You'll find that most hotel reservations are refundable provided that you cancel before the hotel's cancellation deadline, which is often 24 or 48 hours before your scheduled arrival. If your reservation is non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in San Juan Bautista.
Where can I learn more about changing or cancelling my trip to San Juan Bautista?
For more details about picking new dates or cancelling your trip to San Juan Bautista, go to https://www.expedia.com/service/.
What's the best place to stay on a budget in San Juan Bautista?
Based on our traveler reviews, Hospedaje Las Amazonas is a top choice for a less expensive stay. View all budget hotels in San Juan Bautista.
What's the best pet-friendly accommodation in San Juan Bautista?
Pura Chata Ecolodge is a top lodge for people traveling with their pets, and offers an outdoor pool and free WiFi for its human guests. Two other good options for you and your pet's trip include Amazon Lodge Varillal and Casa kukama lodge. See more pet-friendly hotel accommodations in San Juan Bautista.
What are some accommodations with pools in San Juan Bautista?
Hotel Parthenon is a top hotel with a pool, free breakfast, and free WiFi. Poseidon Guest House is an additional hotel with an onsite pool. View all hotels with pools in San Juan Bautista.
What is the best spa hotel in San Juan Bautista?
Iquitos See all spa hotels in San Juan Bautista.
What is staying in San Juan Bautista like?
Travelers to San Juan Bautista will find plenty to explore and enjoy. In San Juan Bautista, there are 17 hotels and other accommodations to choose from. Find out more about San Juan Bautista.
What should I see while I'm in San Juan Bautista?
The picturesque setting of Plaza José Abelardo Quiñones and Quistococha Lake exemplify the area's natural beauty. A couple of additional sights to add to your agenda are Amazon Rescue Center and El Encanto de Laguna Waterpark. Check out what more to see and do in Expedia's San Juan Bautista guide.
What's the seasonal weather like in San Juan Bautista?
The hottest months are usually September and October with an average temp of 79°F, while the coldest months are July and June with an average of 77°F. The rainiest months in San Juan Bautista are March, April, January, and December, with each month seeing an average of 14 inches of rainfall.