Find hotels near Labuan Bajo Port, Labuan Bajo from ¥3,158

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Our top choices for Labuan Bajo Port hotels

Seaesta Komodo Hotel & Hostel

Seaesta Komodo Hotel & Hostel
3.0 star property
0.2 km from Labuan Bajo Port
9.4 out of 10, Exceptional, (82)
"Lovely chilled atmosphere, was busy but not crowded, great place to stay, music each night, food good"
United Kingdom
Jamie
The price is ¥6,865
¥8,467 total
includes taxes & fees
Jan 15 - Jan 16, 2026
Seaesta Komodo Hotel & Hostel

Harbour Komodo Hotel

Harbour Komodo Hotel
2.5 star property
0.2 km from Labuan Bajo Port
9.0 out of 10, Wonderful, (117)
"I can’t say enough about this property. Everything from start to finish was perfect. The staff rocked like no other and the hotel’s location was perfect. I will definitely stay here again "
United States
Jeff
The price is ¥6,173
¥7,630 total
includes taxes & fees
Jan 2 - Jan 3, 2026
Harbour Komodo Hotel

Komodo Suites Downtown

Komodo Suites Downtown
2.0 star property
0.2 km from Labuan Bajo Port
9.2 out of 10, Wonderful, (24)
"Great place to stay!!"
United States
Eliel
The price is ¥8,416
¥10,201 total
includes taxes & fees
Jan 12 - Jan 13, 2026
Komodo Suites Downtown

Meruorah Komodo Labuan Bajo

Meruorah Komodo Labuan Bajo
5.0 star property
0.3 km from Labuan Bajo Port
8.8 out of 10, Excellent, (137)
"Good locatiom wit to"
United States
Debbie
The price is ¥15,230
¥18,865 total
includes taxes & fees
Jan 9 - Jan 10, 2026
Meruorah Komodo Labuan Bajo

TA’AKTANA, a Luxury Collection Resort & Spa, Labuan Bajo

TA’AKTANA, a Luxury Collection Resort & Spa, Labuan Bajo
5.0 star property
1.9 km from Labuan Bajo Port
9.8 out of 10, Exceptional, (20)
"The resort is a greace "
United Kingdom
Fraser
The price is ¥46,450
¥56,205 total
includes taxes & fees
Jan 9 - Jan 10, 2026
TA’AKTANA, a Luxury Collection Resort & Spa, Labuan Bajo

Flamingo Ceria

Flamingo Ceria
3.0 star property
0.2 km from Labuan Bajo Port
8.4 out of 10, Very Good, (8)
"I booked a room at Flamingo Ceria After arriving they informed me that they moved me to Flamingo Avia, a sister property. The bed was decent, the shower was tiny, but small. The AC worked. The restaurant up top had a limited menu, but it was tasty."
United States
Reyna
The price is ¥4,716
¥5,804 total
includes taxes & fees
Jan 12 - Jan 13, 2026
Flamingo Ceria

Katamaran Hotel & Resort Komodo

Katamaran Hotel & Resort Komodo
5.0 star property
2.4 km from Labuan Bajo Port
9.6 out of 10, Exceptional, (47)
"It's one of the best hotels we'd ever stayed at... and we stayed at quite a few over the years! Stunning setting on the cliff, beautiful open space lobby, spacious brand new room with the very clean bathroom, beautiful views from the balcony, very helpful staff, and delicious breakfast with lots of choices! "
United States
Lira
Katamaran Hotel & Resort Komodo

Komodo Lodge

Komodo Lodge
3.0 star property
0.4 km from Labuan Bajo Port
8.2 out of 10, Very Good, (76)
"Nice place close to the town "
United Kingdom
Lisa
The price is ¥6,026
¥7,416 total
includes taxes & fees
Jan 9 - Jan 10, 2026
Komodo Lodge

Centro Bajo Hotel

Centro Bajo Hotel
3.0 star property
1.7 km from Labuan Bajo Port
9.0 out of 10, Wonderful, (22)
"The free airport transfer was super helpful and very attentive staff!"
United States
Gabriel
Centro Bajo Hotel

AYANA Komodo Waecicu Beach

AYANA Komodo Waecicu Beach
5.0 star property
2.8 km from Labuan Bajo Port
9.6 out of 10, Exceptional, (93)
"Amazing property, we loved our stay!"
Canada
Shannon G.
The price is ¥22,558
¥27,295 total
includes taxes & fees
Jan 25 - Jan 26, 2026
AYANA Komodo Waecicu Beach

ZASGO HOTEL

ZASGO HOTEL
4.0 star property
0.9 km from Labuan Bajo Port
8.4 out of 10, Very Good, (88)
"Staff all are very friendly and helpful."
Singapore
Carrine
The price is ¥7,443
¥9,005 total
includes taxes & fees
Jan 30 - Jan 31, 2026
ZASGO HOTEL

Palulu Garden Homestay

Palulu Garden Homestay
2.5 star property
0.3 km from Labuan Bajo Port
8.0 out of 10, Very Good, (8)
"Very very friendly and welcoming hosts - speaking very good English. Delicious breakfast with homeroasted coffee Wonderful surrounding garden with chickens and cute cats. Would come back any time again."
Germany
Jonathan
Palulu Garden Homestay

Hotel Bonne Nuit

Hotel Bonne Nuit
3.0 star property
1 km from Labuan Bajo Port
8.2 out of 10, Very Good, (41)
"Staff were very good and could do enough, location is great for the airport, breakfast was lovely. "
United Kingdom
Ben
The price is ¥2,391
¥3,158 total
includes taxes & fees
Jan 13 - Jan 14, 2026
Hotel Bonne Nuit

World BnB

World BnB
3.0 star property
2.3 km from Labuan Bajo Port
9.0 out of 10, Wonderful, (43)
"-"
Spain
Esther
World BnB

DEJAVU 2.0 HOTEL LABUAN BAJO KOMODO

DEJAVU 2.0 HOTEL LABUAN BAJO KOMODO
3.5 star property
< 0.1 km from Labuan Bajo Port
7.4 out of 10, Good, (65)
"Staff is excellent. Room was good. Balcony looked onto the port, which is noisy. However, I would definitely stay again. Particularly if you are doing a liveaboard scuba trip, the hotel is right next to the port."
United States
John
The price is ¥4,402
¥5,418 total
includes taxes & fees
Jan 11 - Jan 12, 2026
DEJAVU 2.0 HOTEL LABUAN BAJO KOMODO

Bintang Flores Hotel

Bintang Flores Hotel
4.0 star property
1.8 km from Labuan Bajo Port
8.2 out of 10, Very Good, (161)
"The staff were so friendly, pool was beautiful and the breakfast buffet selection was great! Easy walk to town or restaurants! "
Canada
Heidi
The price is ¥26,088
¥32,312 total
includes taxes & fees
Jan 6 - Jan 7, 2026
Bintang Flores Hotel

Eco Tree O'tel

Eco Tree O'tel
3.5 star property
0.3 km from Labuan Bajo Port
7.2 out of 10, Good, (104)
"Great stay!! Stayed for just 1 night after a boat trip but wished i had stayed longer to explore the area! "
United States
Christine
Eco Tree O'tel

Loccal Collection Hotel

Loccal Collection Hotel
4.0 star property
1 km from Labuan Bajo Port
7.4 out of 10, Good, (50)
"Watching the gorgeous sunset whilst relaxing in the room’s outdoor pool was amazing."
Singapore
Ching Kim
Loccal Collection Hotel

OhJulia Hotel Komodo

OhJulia Hotel Komodo
3.5 star property
0.2 km from Labuan Bajo Port
8.8 out of 10, Excellent, (3)
"Great people attentive kind"
United States
JAMES
The price is ¥7,810
¥9,740 total
includes taxes & fees
Jan 31 - Feb 1, 2026
OhJulia Hotel Komodo

LAPRIMA Hotel Flores

LAPRIMA Hotel Flores
3.0 star property
1.4 km from Labuan Bajo Port
7.8 out of 10, Good, (71)
"The grounds were in great shape, the staff was friendly, the food was fantastic, and the views were gorgeous."
United States
Michael
The price is ¥8,514
¥10,545 total
includes taxes & fees
Jan 11 - Jan 12, 2026
LAPRIMA Hotel Flores
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Labuan Bajo Port Hotel Reviews

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Frequently asked questions

What's the area like around Labuan Bajo Port?
Labuan Bajo Port is located in an area of Labuan Bajo that travelers like for its island views, beaches, and sunsets. If you're looking for a convenient place to stay, check out the 85 hotels and other accommodations you'll find within a mile.
What's the best place to stay near Labuan Bajo Port?
Adjacent to Labuan Bajo Port, Seaesta Komodo Hotel & Hostel is one of the top choices for your stay based on our traveler data, and this hotel offers 2 bars and a restaurant. Other good options within a short distance include Meruorah Komodo Labuan Bajo and Harbour Komodo Hotel.
How many hotels will I be able to find near Labuan Bajo Port?
Expedia has 85 hotels and other accommodations within a mile from Labuan Bajo Port.
If I need to cancel the hotel reservation for my stay near Labuan Bajo Port, will I receive a refund?
Yes! The majority of hotel room reservations are fully refundable if you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and receive a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to get the best deals available near Labuan Bajo Port.
Where can I learn more about changing or cancelling my trip in the area near Labuan Bajo Port?
For more details about changing or cancelling your stay near Labuan Bajo Port, go to https://www.expedia.com/service/.
What can I see and do near Labuan Bajo Port?
Lounge by the water at Pede Labuan Beach and Waecicu Beach. Explore nature at Batu Cermin Cave and Sylvia Hill. A visit to St. Angela Labuan Bajo is worth the trip when you're visiting.