Top 10 Hotels in Harpers Ferry, IA from ￥11,405 - Competitive Prices

A river surrounded by dense green forest and hills in the background.

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Go beyond your typical stay in Harpers Ferry

Pet friendly

Pool

Apartment

Hot tub

Cabin

Family friendly

Waterpark

Cottage

Condo

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Our top choices for Harpers Ferry hotels

Breakfast included

Pet friendly

Hotel

Pool

Reserve now, pay later

A deck with outdoor seating, a fire pit, and a view of a river and bridge.

A modern hotel lobby with a reception desk, seating area, large windows, and decorative lighting.

1. Waterfront Hotel

Prairie Du Chien

Greg

￥19,902

￥22,193 total

includes taxes & fees

Aug 26 - Aug 27

An indoor swimming pool with a blue interior, surrounded by a seating area with blue cushions and wicker furniture.

A dining area with multiple tables and chairs, a kitchen area with appliances, and a blue wall.

A hotel room with a large bed, two bedside tables with lamps, a TV, a shower area, and a bathroom.

A reception area with a stone wall, wooden reception desk, and a herringbone patterned floor.

2. AmericInn by Wyndham Prairie du Chien

Prairie Du Chien

Angela

￥12,025

￥13,287 total

includes taxes & fees

Sep 3 - Sep 4

A modern living room with a sofa, coffee table, and red chairs. There is a kitchen area with a counter and appliances. A fireplace is visible in the background.

A spacious living room with a black leather sofa, a wooden coffee table, and a unique pineapple-shaped lamp. A kitchen area is visible in the background with a stone wall and a sign reading "Windsor Place Inn."

A spacious living room with a fireplace, a sofa set, and a coffee table.

A reception desk at Windsor Place Inn with a stone wall backdrop, a clock, and a Dell computer.

3. Windsor Place Inn

Southside

Brian

￥11,553

￥12,767 total

includes taxes & fees

Aug 26 - Aug 27

A compact room with two beds, a kitchenette, and a TV mounted on the wall.

A row of red cabins with a white house in the background, surrounded by autumn foliage.

A small wooden cabin with a single door and a window, a bench, and a table outside.

A compact kitchen with a red microwave, a coffee maker, and a sink.

4. Scenic Valley Motel

Lansing

Michael

￥8,675

￥12,894 total

includes taxes & fees

Sep 14 - Sep 15

A modern hotel room with a kitchenette, a bed, a sofa, and a TV.

A Microtel hotel with a flat facade, multiple windows, and a flagpole.

A hotel lobby with a reception desk, seating area, and large windows.

5. Microtel Inn & Suites by Wyndham Prairie du Chien

Southside

Janice

￥12,169

￥13,568 total

includes taxes & fees

Sep 3 - Sep 4

A bedroom with a bed, two white wicker chairs, a small white table, and a wooden floor.

A hotel lobby with a wooden door, a clock, a framed picture, a coffee maker, and a dining area with a chair and table.

A motel with a signboard, a parking lot, and a road in front.

A bedroom with a large bed, two white wicker chairs, a nightstand with a phone, and a window with blinds.

6. Prairie Voyager

Southside

Jeff

￥12,743

￥14,210 total

includes taxes & fees

Aug 26 - Aug 27

A bear in an indoor water park with slides and a tree-like structure.

A hot tub with a rocky backdrop, a tiled edge, and a metal ladder.

A modern interior with a dining area, blue sliding doors, and a flat-screen TV on the wall.

A bar area with a wooden counter, black bar stools, and a mounted deer head.

7. Country Inn & Suites by Radisson, Prairie du Chien

Prairie Du Chien

amiee

￥16,785

￥18,716 total

includes taxes & fees

Sep 14 - Sep 15

A wooden reception desk with a clock and a 'No Smoking' sign.

A cozy living room with a fireplace, leather sofa, wooden chairs, a coffee table, and a flat-screen TV mounted on a stone wall.

A hotel room with a large bed, two bedside tables with lamps, a painting on the wall, and a wooden wall paneling.

A room with a wooden wall, a desk with a lamp, and a shelf with various items.

8. Boarders Inn & Suites by Cobblestone Hotels – Waukon

Waukon

James

￥13,015

￥14,577 total

includes taxes & fees

Aug 26 - Aug 27

A hotel hallway with a patterned carpet, white walls, and doors on both sides.

A motel with a sign reading "North Wood Inn Motel" and a number "1930" on the front.

A reception area with a stone counter, a television mounted on the wall, and a window with a view of the street.

9. Northwood Inn Prairie Du Chien

Southside

Dee

￥10,229

￥11,405 total

includes taxes & fees

Sep 3 - Sep 4

A hotel room with two beds, a desk with a computer, a TV, and a window with curtains.

A covered pavilion with a stone plaque, a picnic area, and a view of the mountains.

A spacious room with a large window, a sofa, a small table, and a carpeted floor.

10. Comfort Inn & Suites Marquette - Prairie du Chien

Marquette

Kevin

￥11,786

￥13,200 total

includes taxes & fees

Sep 3 - Sep 4

A wooden cabin-style room with a large mirror, a bed, a vanity with a mirror, and a bathtub.

A hot tub with metal steps and a wooden frame, a sign indicating pool access for persons with infectious diseases, and a Whirlpool switch sign.

A modern living room with a sofa, armchairs, and a coffee table. There is a kitchen area with a microwave, refrigerator, and a dining table with chairs.

An indoor swimming pool with a wooden ceiling, lounge chairs, and potted plants.

11. Quality Inn & Suites Prairie Du Chien

Southside

John

￥11,158

￥12,329 total

includes taxes & fees

Sep 3 - Sep 4

A wooden deck with a white railing, surrounded by greenery and a stone wall.

A cozy log cabin bedroom with a large bed, two wall-mounted lamps, a ceiling fan, and a rustic decor.

A cozy cabin room with a bed, a chair, a TV, a fireplace, and a clock on the wall.

A room with a sliding glass door leading to a deck, a small table with chairs, a wooden cabinet, and a trash can.

12. Trickling Waters Retreat

Marquette

Roger

￥10,977

￥12,294 total

includes taxes & fees

Aug 26 - Aug 27

A room with two wooden beds, a carpeted floor, and wooden paneling on the walls.

An aerial view of a property with a large building, a parking area, and a road.

A compact kitchenette with a microwave, coffee maker, and mini-fridge.

A bathroom with a toilet, a sink, a wooden shelf with towels, a shower, and a mirror.

13. Sportsmen Motel

Dorchester

Lois

￥9,402

￥14,091 total

includes taxes & fees

Sep 14 - Sep 15

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Stay near popular Harpers Ferry attractions

Yellow River State Forest

9.4/10 (72 reviews)

Nestled in Iowa's Driftless Area, Yellow River State Forest offers 25 miles of trails through dramatic ridges and dense woodlands. Enjoy primitive camping and trout fishing in this serene 8,500-acre wilderness retreat.

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Waukon Junction Wildlife Area

You can take time to visit Waukon Junction Wildlife Area during your travels to Harpers Ferry. While you're in the area, wander around the parks.

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Mud Hen Lake

Commune with nature and explore the great outdoors at Mud Hen Lake during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Harpers Ferry City Library

This community library ranks thirteenth nationally among similar-sized towns. Browse the diverse collection, attend a craft fair, or utilize the free public computers in this welcoming local hub.

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Harpers Ferry City Park

Explore the great outdoors at Harpers Ferry City Park, a lovely green space in Harpers Ferry. While you're in the area, wander around the parks.

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Bluffview Park

Explore the great outdoors at Bluffview Park, a lovely green space in Harpers Ferry. While you're in the area, wander around the parks.

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Rittenhouse Lake

Commune with nature and explore the great outdoors at Rittenhouse Lake during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Noble's Island

Commune with nature and explore the great outdoors at Noble's Island during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Learn more about Harpers Ferry

Nestled along the Mississippi River, this charming town invites visitors to paddle through Butters Lake or spot wildlife at Waukon Junction Wildlife Area. Hike among ancient Native American burial mounds at Effigy Mounds National Monument or explore the forested trails of Yellow River State Forest.

See all hotels in Harpers Ferry

A river with a dam, surrounded by greenery and a clear sky.

Top Harpers Ferry Hotel Reviews

Microtel Inn & Suites by Wyndham Prairie du Chien

10/10 Excellent

"Everything was nice."

Romantic Get-a-Way!! 1954 Rail Road Caboose!! Relaxing Hot Tub!

10/10 Excellent

"Was cozy and quiet. Very nice property, to enjoy some relaxation time for a weekend getaway with my wife. The screened hot tub room was a big perk. We would definitely come back and would recommend this place to anyone looking to getaway and enjoy some quiet time with nature. The host provided lots of things on site and was very responsive"

Comfort Inn & Suites Marquette - Prairie du Chien

10/10 Excellent

"I loved this hotel by the Mississippi River. Room was a delight, chose bluff side. Some complain about train noise, only heard one during stay. Breakfast I’d rate as excellent with many choices including fried eggs, potatoes, sausage, waffles and assorted breads. Only downside was limited parking but we always managed a spot. Overall, very good."

Northwood Inn Prairie Du Chien

8/10 Good

"The staff was incredibly welcoming and friendly. We really liked the room decor, and everything was very comfortable. We attempted to use the bathroom hair dryer, but it instantly smelled like smoke when we turned it on - so we opted to not continue use. The main lock on our door wasn’t functional, but thankfully there was a chain lock we could latch. All in all, we really enjoyed our stay and would come here again."

Trickling Waters Retreat

10/10 Excellent

"Nice place Owner was helpful Lot of steps"

Waterfront Hotel

10/10 Excellent

"Location was great, rooms were clean and the staff was friendly! The breakfast could have been better - no burners to keep any of the hot food warm so it was all cold. Eggs, sausage, etc. Otherwise, offered a lot of bakery options and other items."

Windsor Place Inn

10/10 Excellent

"It is just a bit difficult to find as there is a motel right on the road in front of it - we went in there and were redirected to the building behind that one. Other than that, a fine stay."

Boarders Inn & Suites by Cobblestone Hotels – Waukon

8/10 Good

"Hotel is old but seems well maintained and cleaned."

Log Cabin next to the Mississippi River

10/10 Excellent

"Property was very nice and clean. Had all amenities l!"

More cheap stays in Harpers Ferry

Northwood Inn Prairie Du Chien

1930 S Marquette Rd Prairie Du Chien WI

￥10,229

￥11,405 total

Sep 3 - Sep 4

includes taxes & fees

8.4/10 Very Good! (170 reviews)

Quality Inn & Suites Prairie Du Chien

37268 US Highway 18 Prairie Du Chien WI

￥11,158

￥12,329 total

Sep 3 - Sep 4

includes taxes & fees

Windsor Place Inn

1936 Marquette Road South Prairie Du Chien WI

￥11,553

￥12,767 total

Aug 26 - Aug 27

includes taxes & fees

8.4/10 Very Good! (1,000 reviews)

Scenic Valley Motel

1608 Main St Lansing IA

￥8,675

￥12,894 total

Sep 14 - Sep 15

includes taxes & fees

8.2/10 Very Good! (137 reviews)

Comfort Inn & Suites Marquette - Prairie du Chien

100 North Street Marquette IA

￥11,786

￥13,200 total

Sep 3 - Sep 4

includes taxes & fees

8.8/10 Excellent! (1,005 reviews)

Microtel Inn & Suites by Wyndham Prairie du Chien

1833 S Marquette Road Prairie Du Chien WI

￥12,169

￥13,568 total

Sep 3 - Sep 4

includes taxes & fees

8.2/10 Very Good! (628 reviews)

Frequently asked questions

What's the best place for a stay in Harpers Ferry?

Located 10.3 mi (16.6 km) from the heart of Harpers Ferry, Waterfront Hotel is a top choice for your stay based on our traveler data. Two other options for your visit to the area are Quality Inn & Suites Prairie Du Chien and Windsor Place Inn. See all available top hotels, or vacation rentals in Harpers Ferry.

What are some of the best vacation rentals that Harpers Ferry has to offer?

Upper Place Vacation Cottage: This vacation home rental outside of Harpers Ferry is located in a rural location and has a fireplace, a patio, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. Make the most of the garden in this rental home to help you unwind. See all vacation rentals in Harpers Ferry.

If I need to cancel my hotel reservation in Harpers Ferry, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of your scheduled arrival. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Harpers Ferry.

Where can I learn more about changing or cancelling my trip to Harpers Ferry?

To find more details about updating your trip to Harpers Ferry or cancelling it, go to https://www.expedia.com/service/.

What's the best hotel to stay close to Effigy Mounds National Monument?

Country Inn & Suites by Radisson, Prairie du Chien, WI is one of the top choices for your stay based on our traveler data, and this 3-star hotel offers free breakfast and a restaurant. It's located 2.7 mi (4.3 km) from Effigy Mounds National Monument. Other good options within a few miles include Waterfront Hotel and Cobblestone Inn & Suites - Marquette/Prairie du Chien.

What about the best place to stay close to Yellow River State Forest?

One of the top choices for your stay is Country Inn & Suites by Radisson, Prairie du Chien, WI, located 8.6 mi (13.9 km) from Yellow River State Forest, and this 3-star hotel offers free breakfast and a restaurant. Waterfront Hotel and Cobblestone Inn & Suites - Marquette/Prairie du Chien are a couple of other good options within the surrounding area.

What are some accommodations with pools in Harpers Ferry?

Quality Inn & Suites Prairie Du Chien: Offers full, an indoor pool, and free self parking. Black Bear A-Frame Waterfront Log Cabin with Hot Tub Jacuzzi and Wexford Hollow 6 BR Cabin with Swimming Pool & Hot Tub are a couple of other choices that offer an onsite pool. View all hotels with pools in Harpers Ferry.

What's the best accommodation near La Crosse Municipal Airport (LSE)?

Country Inn & Suites by Radisson, La Crosse, WI is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 1.7 mi (2.8 km) from La Crosse Municipal Airport. Other options near the airport are AmericInn by Wyndham La Crosse Riverfront-Conference Center and Motel 6 La Crosse, WI.

What is staying in Harpers Ferry like?

Visitors can enjoy all that Harpers Ferry has to offer including the restaurants and parks. In Harpers Ferry, there are 21 hotels and other accommodations to choose from. Find out more about Harpers Ferry.

What is there to see in Harpers Ferry?

Natural beauty is on display at Yellow River State Forest, Mississippi River, and Harpers Ferry City Park. A couple of additional sights to add to your agenda are Effigy Mounds National Monument and Harpers Ferry City Library. Check out what more to see and do in Expedia's Harpers Ferry guide.

What's the weather like in Harpers Ferry?

The hottest months are usually July and August with an average temp of 69°F, while the coldest months are January and February with an average of 25°F. The snowiest months in Harpers Ferry are January, March, April, and December, with each month seeing an average of 7 inches of snowfall.

Find hotels in Harpers Ferry, IA from ￥11,405

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Harpers Ferry

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Harpers Ferry hotels

1. Waterfront Hotel

2. AmericInn by Wyndham Prairie du Chien

3. Windsor Place Inn

4. Scenic Valley Motel

5. Microtel Inn & Suites by Wyndham Prairie du Chien

6. Prairie Voyager

7. Country Inn & Suites by Radisson, Prairie du Chien

8. Boarders Inn & Suites by Cobblestone Hotels – Waukon

9. Northwood Inn Prairie Du Chien

10. Comfort Inn & Suites Marquette - Prairie du Chien

11. Quality Inn & Suites Prairie Du Chien

12. Trickling Waters Retreat

13. Sportsmen Motel

Stay near popular Harpers Ferry attractions

Yellow River State Forest

Waukon Junction Wildlife Area

Mud Hen Lake

Harpers Ferry City Library

Harpers Ferry City Park

Bluffview Park

Rittenhouse Lake

Noble's Island

Learn more about Harpers Ferry

Top Harpers Ferry Hotel Reviews

Microtel Inn & Suites by Wyndham Prairie du Chien

Romantic Get-a-Way!! 1954 Rail Road Caboose!! Relaxing Hot Tub!

Comfort Inn & Suites Marquette - Prairie du Chien

Northwood Inn Prairie Du Chien

Trickling Waters Retreat

Waterfront Hotel

Windsor Place Inn

Boarders Inn & Suites by Cobblestone Hotels – Waukon

Log Cabin next to the Mississippi River

More cheap stays in Harpers Ferry

Northwood Inn Prairie Du Chien

Quality Inn & Suites Prairie Du Chien

Windsor Place Inn

Scenic Valley Motel

Comfort Inn & Suites Marquette - Prairie du Chien

Microtel Inn & Suites by Wyndham Prairie du Chien

Frequently asked questions

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