Top 10 Hotels in Harpers Ferry, IA from ￥12,482 - Competitive Prices

A river surrounded by dense green forest and hills in the background.

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Go beyond your typical stay in Harpers Ferry

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Pool

Apartment

Hot tub

Cabin

Family friendly

Cottage

Waterpark

Condo

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Our top choices for Harpers Ferry hotels

1. Waterfront Hotel

Prairie Du Chien

WESTCOTT

￥20,027

￥22,332 total

includes taxes & fees

Aug 30 - Aug 31

2. Country Inn & Suites by Radisson, Prairie du Chien

Prairie Du Chien

Daniel

￥16,828

￥18,762 total

includes taxes & fees

Sep 20 - Sep 21

Comfort Studio Suite, 2 Queen Beds, Kitchenette

3. Windsor Place Inn

Southside

"We stayed two nights, Room was better than expected, had more than two double beds , only thing I can say is they could use a better bar of soap and more than one, very comfortable beds, staff was great, not many of them which is fine,lobbyis beautiful and welcoming, breakfast was typical so no complaints and plenty of parking but we stayed during the week so not many people staying, very quiet property"

Brett

￥11,625

￥12,845 total

includes taxes & fees

Aug 30 - Aug 31

4. AmericInn by Wyndham Prairie du Chien

Prairie Du Chien

Angela

￥12,111

￥13,383 total

includes taxes & fees

Sep 13 - Sep 14

Premium Room, Non Smoking | Front of property

5. Northwood Inn Prairie Du Chien

Southside

Mark

￥10,397

￥12,482 total

includes taxes & fees

Sep 1 - Sep 2

6. Microtel Inn & Suites by Wyndham Prairie du Chien

Southside

Janice

￥12,256

￥13,665 total

includes taxes & fees

Sep 1 - Sep 2

7. Quality Inn & Suites Prairie Du Chien

Southside

John

￥11,558

￥12,771 total

includes taxes & fees

Sep 2 - Sep 3

8. Scenic Valley Motel

Lansing

Madeline

￥8,697

￥12,927 total

includes taxes & fees

Aug 31 - Sep 1

9. Boarders Inn & Suites by Cobblestone Hotels – Waukon

Waukon

James

￥13,108

￥14,681 total

includes taxes & fees

Sep 29 - Sep 30

Standard Room, 2 Queen Beds, Non Smoking

10. Comfort Inn & Suites Marquette - Prairie du Chien

Marquette

Kevin

￥12,164

￥13,623 total

includes taxes & fees

Sep 29 - Sep 30

11. Prairie Voyager

Southside

Jeff

￥12,765

￥14,234 total

includes taxes & fees

Aug 31 - Sep 1

12. Trickling Waters Retreat

Marquette

Roger

￥12,647

￥14,165 total

includes taxes & fees

Aug 30 - Aug 31

13. Sportsmen Motel

Dorchester

Lois

￥9,366

￥14,076 total

includes taxes & fees

Sep 15 - Sep 16

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Stay near popular Harpers Ferry attractions

Yellow River State Forest

9.4/10 (72 reviews)

Nestled in Iowa's Driftless Area, Yellow River State Forest offers 25 miles of trails through dramatic ridges and dense woodlands. Enjoy primitive camping and trout fishing in this serene 8,500-acre wilderness retreat.

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Waukon Junction Wildlife Area

You can take time to visit Waukon Junction Wildlife Area during your travels to Harpers Ferry. While you're in the area, wander around the parks.

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Mud Hen Lake

Commune with nature and explore the great outdoors at Mud Hen Lake during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Harpers Ferry City Library

This community library ranks thirteenth nationally among similar-sized towns. Browse the diverse collection, attend a craft fair, or utilize the free public computers in this welcoming local hub.

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Harpers Ferry City Park

Explore the great outdoors at Harpers Ferry City Park, a lovely green space in Harpers Ferry. While you're in the area, wander around the parks.

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Bluffview Park

Explore the great outdoors at Bluffview Park, a lovely green space in Harpers Ferry. While you're in the area, wander around the parks.

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Rittenhouse Lake

Commune with nature and explore the great outdoors at Rittenhouse Lake during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Noble's Island

Commune with nature and explore the great outdoors at Noble's Island during your travels in Harpers Ferry. While you're in the area, wander around the parks.

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Learn more about Harpers Ferry

Nestled along the Mississippi River, this charming town invites visitors to paddle through Butters Lake or spot wildlife at Waukon Junction Wildlife Area. Hike among ancient Native American burial mounds at Effigy Mounds National Monument or explore the forested trails of Yellow River State Forest.

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A river with a dam, surrounded by greenery and a clear sky.

Top Harpers Ferry Hotel Reviews

Waterfront Hotel

8/10 Good

"Beautiful hotel! Seemed a bit short staffed so had to ring someone to check in at 3:30 pm. Rooms are nice but not enough places to hang 4 towels or a hand towel."

Log Cabin next to the Mississippi River

10/10 Excellent

"We greatly enjoyed our stay. The place was dog friendly so that was convenient for us. It was a beautiful cabin"

Comfort Inn & Suites Marquette - Prairie du Chien

10/10 Excellent

"like how you can walk from hotel to the overlook and breakfast is good"

Trickling Waters Retreat

8/10 Good

"Were there a couple of packaged napkin/plastic silverware? If so, we didn’t see them. A “reading lamp” of some type near a chair would be good. And ONE brighter bulb of the 3 overhead in bathroom would have been helpful."

Microtel Inn & Suites by Wyndham Prairie du Chien

10/10 Excellent

"Everything was nice."

Romantic Get-a-Way!! 1954 Rail Road Caboose!! Relaxing Hot Tub!

10/10 Excellent

"Was cozy and quiet. Very nice property, to enjoy some relaxation time for a weekend getaway with my wife. The screened hot tub room was a big perk. We would definitely come back and would recommend this place to anyone looking to getaway and enjoy some quiet time with nature. The host provided lots of things on site and was very responsive"

Boarders Inn & Suites by Cobblestone Hotels – Waukon

8/10 Good

"Hotel is old but seems well maintained and cleaned."

Timber Ridge Lodge -HOT TUB- POOL

8/10 Good

"We still had a good time despite a few mishaps. First I had to call to get code to get into the house. 2nd it rained and there was a small leak in the kitchen ceiling and had to deal with some Carpenter ants. I reached out to the host to give her an FYI and she never messaged back or acknowledged she recieved my message. We did enjoy the pool, hottub and bonfire. Loved the privacy. Still had a fun filled family vacation!"

Newer, spacious and clean cottage with river view!

10/10 Excellent

"Beautiful cottage. Very clean and had everything we needed. Not sure you could find a nicer place in Harpers."

More cheap stays in Harpers Ferry

Northwood Inn Prairie Du Chien

1930 S Marquette Rd Prairie Du Chien WI

￥10,397

￥12,482 total

Sep 1 - Sep 2

includes taxes & fees

Quality Inn & Suites Prairie Du Chien

37268 US Highway 18 Prairie Du Chien WI

￥11,558

￥12,771 total

Sep 2 - Sep 3

includes taxes & fees

Windsor Place Inn

1936 Marquette Road South Prairie Du Chien WI

￥11,625

￥12,845 total

Aug 30 - Aug 31

includes taxes & fees

Scenic Valley Motel

1608 Main St Lansing IA

￥8,697

￥12,927 total

Aug 31 - Sep 1

includes taxes & fees

8.2/10 Very Good! (138 reviews)

Comfort Inn & Suites Marquette - Prairie du Chien

100 North Street Marquette IA

￥12,164

￥13,623 total

Sep 29 - Sep 30

includes taxes & fees

8.8/10 Excellent! (1,000 reviews)

Microtel Inn & Suites by Wyndham Prairie du Chien

1833 S Marquette Road Prairie Du Chien WI

￥12,256

￥13,665 total

Sep 1 - Sep 2

includes taxes & fees

8.2/10 Very Good! (628 reviews)

Frequently asked questions

What's the best place for a stay in Harpers Ferry?

Located 10.3 mi (16.6 km) from the heart of Harpers Ferry, Waterfront Hotel is a top choice for your stay based on our traveler data. Two other options for your visit to the area are Quality Inn & Suites Prairie Du Chien and Windsor Place Inn. See all available top hotels, or vacation rentals in Harpers Ferry.

What are some of the best vacation rentals that Harpers Ferry has to offer?

Upper Place Vacation Cottage: This vacation home rental outside of Harpers Ferry is located in a rural location and has a fireplace, a patio, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. Make the most of the garden in this rental home to help you unwind. See all vacation rentals in Harpers Ferry.

If I need to cancel my hotel reservation in Harpers Ferry, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of your scheduled arrival. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Harpers Ferry.

Where can I learn more about changing or cancelling my trip to Harpers Ferry?

To find more details about updating your trip to Harpers Ferry or cancelling it, go to https://www.expedia.com/service/.

What's the best hotel to stay close to Effigy Mounds National Monument?

Country Inn & Suites by Radisson, Prairie du Chien, WI is one of the top choices for your stay based on our traveler data, and this 3-star hotel offers free breakfast and a restaurant. It's located 2.7 mi (4.3 km) from Effigy Mounds National Monument. Other good options within a few miles include Waterfront Hotel and Cobblestone Inn & Suites - Marquette/Prairie du Chien.

What about the best place to stay close to Yellow River State Forest?

One of the top choices for your stay is Country Inn & Suites by Radisson, Prairie du Chien, WI, located 8.6 mi (13.9 km) from Yellow River State Forest, and this 3-star hotel offers free breakfast and a restaurant. Waterfront Hotel and Cobblestone Inn & Suites - Marquette/Prairie du Chien are a couple of other good options within the surrounding area.

What are some accommodations with pools in Harpers Ferry?

Quality Inn & Suites Prairie Du Chien: Offers full, an indoor pool, and free self parking. Black Bear A-Frame Waterfront Log Cabin with Hot Tub Jacuzzi and Wexford Hollow 6 BR Cabin with Swimming Pool & Hot Tub are a couple of other choices that offer an onsite pool. View all hotels with pools in Harpers Ferry.

What's the best accommodation near La Crosse Municipal Airport (LSE)?

Country Inn & Suites by Radisson, La Crosse, WI is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 1.7 mi (2.8 km) from La Crosse Municipal Airport. Other options near the airport are AmericInn by Wyndham La Crosse Riverfront-Conference Center and Motel 6 La Crosse, WI.

What is staying in Harpers Ferry like?

Visitors can enjoy all that Harpers Ferry has to offer including the restaurants and parks. In Harpers Ferry, there are 21 hotels and other accommodations to choose from. Find out more about Harpers Ferry.

What is there to see in Harpers Ferry?

Natural beauty is on display at Yellow River State Forest, Mississippi River, and Harpers Ferry City Park. A couple of additional sights to add to your agenda are Waukon Junction Wildlife Area and Effigy Mounds National Monument. Check out what more to see and do in Expedia's Harpers Ferry guide.

What's the weather like in Harpers Ferry?

The hottest months are usually July and August with an average temp of 69°F, while the coldest months are January and February with an average of 25°F. The snowiest months in Harpers Ferry are January, March, April, and December, with each month seeing an average of 7 inches of snowfall.

Find hotels in Harpers Ferry, IA from ￥12,482

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Harpers Ferry

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Harpers Ferry hotels

1. Waterfront Hotel

2. Country Inn & Suites by Radisson, Prairie du Chien

3. Windsor Place Inn

4. AmericInn by Wyndham Prairie du Chien

5. Northwood Inn Prairie Du Chien

6. Microtel Inn & Suites by Wyndham Prairie du Chien

7. Quality Inn & Suites Prairie Du Chien

8. Scenic Valley Motel

9. Boarders Inn & Suites by Cobblestone Hotels – Waukon

10. Comfort Inn & Suites Marquette - Prairie du Chien

11. Prairie Voyager

12. Trickling Waters Retreat

13. Sportsmen Motel

Stay near popular Harpers Ferry attractions

Yellow River State Forest

Waukon Junction Wildlife Area

Mud Hen Lake

Harpers Ferry City Library

Harpers Ferry City Park

Bluffview Park

Rittenhouse Lake

Noble's Island

Learn more about Harpers Ferry

Top Harpers Ferry Hotel Reviews

Waterfront Hotel

Log Cabin next to the Mississippi River

Comfort Inn & Suites Marquette - Prairie du Chien

Trickling Waters Retreat

Microtel Inn & Suites by Wyndham Prairie du Chien

Romantic Get-a-Way!! 1954 Rail Road Caboose!! Relaxing Hot Tub!

Boarders Inn & Suites by Cobblestone Hotels – Waukon

Timber Ridge Lodge -HOT TUB- POOL

Newer, spacious and clean cottage with river view!

More cheap stays in Harpers Ferry

Northwood Inn Prairie Du Chien

Quality Inn & Suites Prairie Du Chien

Windsor Place Inn

Scenic Valley Motel

Comfort Inn & Suites Marquette - Prairie du Chien

Microtel Inn & Suites by Wyndham Prairie du Chien

Frequently asked questions

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