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Check prices for these dates

Next weekend
Nov 13 - Nov 15
In two weeks
Nov 20 - Nov 22
In one month
Dec 4 - Dec 6
In two months
Jan 1 - Jan 3
No exact matches found, but these alternatives could be just right

Recommended hotels in Isahaya

A hotel entrance with a modern design, featuring a glass door, a signboard, and a well-lit interior visible through the glass.

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

Super Hotel Nagasaki Isahaya Natural Hot Spring
3.0 star property
Isahaya
10.0 out of 10, Exceptional, (1 review)
"清潔で快適でした。また利用したいと思います。 温泉があることもよかったです"
Japan
KITANO
The price is ￥9,755
￥10,730 total
Nov 29 - Nov 30
Super Hotel Nagasaki Isahaya Natural Hot Spring
A multi-story building with a flat facade, balconies, and a parking lot in front.

2. Tennen Onsen Hotel Kinshai

Tennen Onsen Hotel Kinshai
2.0 star property
Isahaya
7.8 out of 10, Good, (41 reviews)
"１"
Japan
mutsuo
The price is ￥9,000
￥10,000 total
Nov 9 - Nov 10
Tennen Onsen Hotel Kinshai
A traditional Japanese-style hotel room with tatami flooring, two beds, a television, and a view of greenery through large windows.

3. Hotel Flags Ishihaya Nagasaki

Hotel Flags Ishihaya Nagasaki
3.0 star property
Isahaya
7.8 out of 10, Good, (78 reviews)
"The breakfast was delicious. The room was dated, the furniture and carpet stained and it had a musky smell. We attended a wedding at the hotel and that was fabulous, but it seems that they only care about the wedding business and not about their hotel rooms."
Canada
Suzanne
The price is ￥7,363
￥8,099 total
Dec 1 - Dec 2
Hotel Flags Ishihaya Nagasaki
Property grounds

4. KIKITSU Station Hotel

KIKITSU Station Hotel
3.0 star property
Isahaya
8.6 out of 10, Excellent, (191 reviews)
"Polite staff and clean room. The toilet and the bath/shower were in separate rooms. Overall very nice place to stay."
United Kingdom
Barb
The price is ￥8,737
￥9,611 total
Dec 2 - Dec 3
KIKITSU Station Hotel
A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

5. New Station Hotel Premiere

New Station Hotel Premiere
3.0 star property
Isahaya
7.8 out of 10, Good, (191 reviews)
"Blood stain on sheets, chair broken, smokers on non-smoking floor, mattress & pillows hard as bricks, room adjacent to main road so noisy, no dining, breakfast is a cold bento box. Good shower and staff."
Australia
James
The price is ￥8,881
￥9,769 total
Dec 3 - Dec 4
New Station Hotel Premiere
A multi-story hotel with a modern design, featuring a flat facade and numerous windows.

6. New Station Hotel

New Station Hotel
3.0 star property
Isahaya
7.4 out of 10, Good, (126 reviews)
"Good hotel"
Canada
Kenji
The price is ￥9,545
￥10,500 total
Nov 23 - Nov 24
New Station Hotel
A row of mobile homes with a clear sky and greenery around.

7. Morino Villa & Resort

Morino Villa & Resort
3.0 star property
Isahaya
8.8 out of 10, Excellent, (15 reviews)
"Very Nice Clean Room and Outstanding Customer Service. Love staying, peaceful and quite!"
United States
Maximo
The price is ￥11,681
￥12,951 total
Dec 7 - Dec 8
Morino Villa & Resort
A multi-story hotel with a prominent sign at the ground level.

8. Isahaya Terminal Hotel

Isahaya Terminal Hotel
2.5 star property
Isahaya
6.6 out of 10, (258 reviews)
"-"
Japan
じゅん
The price is ￥10,364
￥11,455 total
Dec 7 - Dec 8
Isahaya Terminal Hotel
A multi-story hotel with a prominent green and white logo on the top.

9. Hotel Route-Inn Isahaya Inter

Hotel Route-Inn Isahaya Inter
3.0 star property
Isahaya
8.2 out of 10, Very good, (303 reviews)
"Relax time so good!"
Japan
?????
The price is ￥12,555
￥13,905 total
Nov 8 - Nov 9
Hotel Route-Inn Isahaya Inter
A modern multi-story building with balconies, large windows, and a flat roof.

10. Omura Station Hotel Nagasaki Airport

Omura Station Hotel Nagasaki Airport
3.0 star property
Omura
8.6 out of 10, Excellent, (289 reviews)
"Great Value"
United States
Brent
The price is ￥9,962
￥11,080 total
Dec 7 - Dec 8
Omura Station Hotel Nagasaki Airport
A multi-story hotel with a central round tower, surrounded by greenery and illuminated by street lamps.

11. HOTEL LiVEMAX Nagasaki Airport

HOTEL LiVEMAX Nagasaki Airport
3.5 star property
Omura
7.6 out of 10, Good, (39 reviews)
"Expedia and their site says they have free airport shuttle...they do not. Someone needs to update now. Carpets were worn out in the halls. The service and friendlyness of the staff is what makes this hotel worth staying at. Also room was huge. "
United States
Gregory
The price is ￥6,635
￥8,027 total
Dec 7 - Dec 8
HOTEL LiVEMAX Nagasaki Airport
The exterior of Omura Station Hotel with a modern design, featuring a prominent entrance with glass doors and a tiled facade.

12. Omura Station Hotel

Omura Station Hotel
3.0 star property
Omura
8.2 out of 10, Very good, (153 reviews)
"Good location and clean. "
Japan
Yasuhiko
The price is ￥9,639
￥10,675 total
Dec 7 - Dec 8
Omura Station Hotel
The exterior of the Omura Central Hotel with a modern design, featuring a glass entrance and a well-lit facade.

13. Omura Central Hotel

Omura Central Hotel
3.0 star property
Omura
7.6 out of 10, Good, (83 reviews)
"Little bit on the basic side. But for that money it was great. Next to the hotel a great beef restaurant."
Ireland
Jan
The price is ￥12,903
￥14,290 total
Nov 8 - Nov 9
Omura Central Hotel
A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

14. Comfort Inn Nagasaki Airport

Comfort Inn Nagasaki Airport
3.0 star property
Omura
8.4 out of 10, Very good, (452 reviews)
"Nice little last minute place to stay. "
United States
Asya
The price is ￥7,545
￥8,300 total
Nov 8 - Nov 9
Comfort Inn Nagasaki Airport
A modern building with a flat roof, large windows, and a seating area with chairs and tables.

15. Hoshino Resorts KAI Unzen

Hoshino Resorts KAI Unzen
3.0 star property
Unzen
9.6 out of 10, Exceptional, (68 reviews)
"An absolutely stunning resort. Beautiful, super clean, wonderful helpful staff and delicious food!"
United States
Gabrielle
Hoshino Resorts KAI Unzen
A parking lot with several train carriages and a red sign for 'HOTEL R9 The Yard'.

16. HOTEL R9 The Yard Omura

HOTEL R9 The Yard Omura
2.0 star property
Omura
8.8 out of 10, Excellent, (40 reviews)
"👍 Parking lot in front of hotel room"
Hong Kong SAR China
Tsz Kin
The price is ￥6,748
￥7,516 total
Nov 29 - Nov 30
HOTEL R9 The Yard Omura
A multi-story hotel with a prominent vertical light feature on the facade, surrounded by trees and streetlights.

17. THE GLOBAL VIEW Nagasaki

THE GLOBAL VIEW Nagasaki
4.0 star property
Nagasaki
9.4 out of 10, Exceptional, (664 reviews)
"Great location!"
United States
Kimberly
The price is ￥10,972
￥12,069 total
Nov 23 - Nov 24
THE GLOBAL VIEW Nagasaki
A modern building with a prominent 'FAV' sign, outdoor seating area, and surrounding greenery.

18. FAV LUX NAGASAKI

FAV LUX NAGASAKI
3.5 star property
Nagasaki
9.4 out of 10, Exceptional, (388 reviews)
"Clean room. Nice breakfast."
United States
DENNIS
The price is ￥14,240
￥15,664 total
Nov 30 - Dec 1
FAV LUX NAGASAKI
A view of a coastal cityscape with a prominent building and a parking lot.

19. Jisco Hotel Obama Onsen

Jisco Hotel Obama Onsen
2.0 star property
Obama Onsen
8.4 out of 10, Very good, (228 reviews)
"This hotel has rooms bigger than most typical Japanese hotels. The bed is comfortable, spacious bathroom and small kitchenette. There was car parking available and facilities are clean all around. It’s within walking distance of the hells juku and convenience stores and restaurants too. The only problem is the onsen was nonoperational when we stayed."
United States
Alexander
The price is ￥8,115
￥9,348 total
Dec 7 - Dec 8
Jisco Hotel Obama Onsen
A hotel building with a sign in Japanese.

20. JR KYUSHU HOTEL Nagasaki

JR KYUSHU HOTEL Nagasaki
3.5 star property
Nagasaki
9.0 out of 10, Wonderful, (821 reviews)
"Great location, easy to get around the city from there. Breakfast was great and staff was very helpful and very friendly."
Canada
sharon
The price is ￥7,840
￥8,675 total
Nov 23 - Nov 24
JR KYUSHU HOTEL Nagasaki
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialties.

See all hotels in Isahaya
A stone bridge over a calm river with lush greenery and clear blue sky.

Top reviews in Isahaya

A row of mobile homes with a clear sky and greenery around.
Morino Villa & Resort

Morino Villa & Resort

Morino Villa & Resort
Isahaya

10/10 Excellent

Very Nice Clean Room and Outstanding Customer Service. Love staying, peaceful and quite!
United States
Maximo
Reviewed June 28, 2026
Morino Villa & Resort