A river winding through a lush green landscape with patches of water bodies and a bridge crossing the river.

Find hotels in Niobrara, NE from ￥17,421

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Oct 30 - Nov 1
Next weekend
Nov 6 - Nov 8

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Niobrara hotels

A spacious kitchen with a large island, modern pendant lights, and a ceiling fan.

1. Lewis and Clark Resort

Lewis and Clark Resort
2.5 star property
Yankton
8.8 out of 10, Excellent, (355 reviews)
"My family and friends have stayed here decades, when paddle fishing. They are always freindly, the rooms and their aminities always work. It's very close to Gavins point and always have plenty of parking for a boat and your vehicles."
United States
TREVOR
The price is ￥17,891
￥18,910 total
includes taxes & fees
Nov 2 - Nov 3
Lewis and Clark Resort
A hotel entrance with a covered patio, brick facade, and a sign reading "Wagner Lakeside Motel".

2. Wagner Lakeside Motel

Wagner Lakeside Motel
2.5 star property
Wagner
6.6 out of 10, (192 reviews)
"The room was comfortable and quiet. The staff was amazing. Very friendly and engaging."
United States
Marlys
The price is ￥16,250
￥17,421 total
includes taxes & fees
Oct 30 - Oct 31
Wagner Lakeside Motel
A grand staircase with wooden railings and a red flag, leading to a room with a patterned ceiling and string lights.

3. The Historic Argo Hotel

The Historic Argo Hotel
3.0 star property
Crofton
7.6 out of 10, Good, (5 reviews)
"Overall it was a good experience. Interesting history and decor."
United States
John
The price is ￥23,535
￥26,360 total
includes taxes & fees
Nov 7 - Nov 8
The Historic Argo Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free

Stay near popular Niobrara attractions

Niobrara State Park

10.0/10 (3 reviews)
Perched at the confluence of the Niobrara and Missouri rivers, this park offers tranquil wilderness exploration. Reserve a cabin or join summer buffalo cookouts with live entertainment under starlit prairie skies.
See properties

Learn more about Niobrara

Paddle down the scenic Niobrara River in a kayak or join a guided tubing adventure past dramatic sandstone cliffs. Visit Smith Falls State Park nearby to see Nebraska's highest waterfall and hike through lush forest trails.

See all hotels in Niobrara
A house surrounded by dense forest, a river, and rolling hills in the background.
Photo by Nebraska Tourism
Open Photo by Nebraska Tourism

Top Niobrara Hotel Reviews

Newly Remodeled Creekside Bungalow on 3 acres with Private Beach Beside Creek

Newly Remodeled Creekside Bungalow on 3 acres with Private Beach Beside Creek

10/10 Excellent
"Great place to stay! Had everything we needed. We will definitely stay here again"
Heidi B. 2-night trip
Posted 4 days ago
Newly Remodeled Creekside Bungalow on 3 acres with Private Beach Beside Creek

More cheap stays in Niobrara

Wagner Lakeside Motel

Wagner Lakeside Motel

710 W Hwy 46 Wagner SD
The price is ￥16,250 per night from Oct 30 to Oct 31
￥16,250
￥17,421 total
Oct 30 - Oct 31
includes taxes & fees

Frequently asked questions

Where is the best place to stay in Niobrara?
Lewis and Clark Resort, located 26.9 mi (43.3 km) from the heart of Niobrara, is a top choice for your stay based on our traveler data. Other good options for your trip to the area are Wagner Lakeside Motel and The Historic Argo Hotel. See all available top hotels, or vacation rentals in Niobrara.
What's the top vacation rental in Niobrara?
Newly Remodeled Creekside Bungalow on 3 acres with Private Beach Beside Creek: This vacation home rental near Niobrara is located in a rural location and offers a barbecue grill, air-conditioning, and free WiFi to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. See all vacation rentals in Niobrara.
If I need to cancel my hotel reservation in Niobrara, will I receive a refund?
Yes! The majority of room reservations are fully refundable if you cancel prior to the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of check in. If you have a non-refundable reservation, it might still be possible to cancel it and receive a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Niobrara.
Where can I learn more about changing or cancelling my trip to Niobrara?
To access more information about picking new dates or cancelling your trip to Niobrara, click here.
What's the best pet-friendly hotel in Niobrara?
Private updated hunting lodge/farmhouse is a top dog-friendly country house, and offers in-room kitchens for its human guests. See more pet-friendly hotel accommodations in Niobrara.
What are some accommodations with pools in Niobrara?
Lewis and Clark Resort: Offers free self parking, a seasonal outdoor pool, and complimentary wireless internet access. View all hotels with pools in Niobrara.
What is the best hotel near Sioux Falls Regional Airport (FSD)?
AeroStay Hotel is a popular hotel, featuring free breakfast and free WiFi. It's located a short 0.1 mi (0.1 km) from Sioux Falls Regional Airport. Other good options close to the airport are Ramada by Wyndham Sioux Falls Airport Hotel & Suites and AmericInn by Wyndham Sioux Falls North.
How is it to stay in Niobrara?
Travelers to Niobrara will find plenty to explore and enjoy. In Niobrara, there are 6 hotels and other accommodations to choose from. Find out more about Niobrara.
What is there to see in Niobrara?
Natural beauty is on display at Lewis and Clark Lake, Niobrara River, and Missouri River. Additionally, you might want to add Niobrara State Park to your itinerary. Check out what more to see and do in Expedia's Niobrara guide.
What's the weather like in Niobrara?
The hottest months are usually July and August with an average temp of 72°F, while the coldest months are January and February with an average of 27°F. The snowiest months in Niobrara are December, January, March, and February, with each month seeing an average of 7 inches of snowfall.