A multi-tiered stone fountain with water jets, surrounded by a paved area with a building in the background.

Find hotels in Fountain City, WI from ¥9,145

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Sep 19 - Sep 20
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Sep 20 - Sep 21
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Sep 25 - Sep 27
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Oct 2 - Oct 4

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Our top choices for Fountain City hotels

1. AmericInn by Wyndham Winona

AmericInn by Wyndham Winona
Winona
United States
SANDRA
¥18,535
¥20,689 total
includes taxes & fees
Oct 11 - Oct 12
AmericInn by Wyndham Winona

2. Days Inn by Wyndham Winona

Days Inn by Wyndham Winona
Winona
United States
Kimberly
¥10,668
¥11,908 total
includes taxes & fees
Oct 4 - Oct 5
Days Inn by Wyndham Winona

3. Alexander Mansion Bed and Breakfast

Alexander Mansion Bed and Breakfast
Historic Downtown Winona
United States
Charlene
¥16,730
¥18,676 total
includes taxes & fees
Sep 29 - Sep 30
Alexander Mansion Bed and Breakfast

4. Super 8 by Wyndham Winona MN

Super 8 by Wyndham Winona MN
Winona
United States
William
¥8,048
¥9,145 total
includes taxes & fees
Oct 4 - Oct 5
Super 8 by Wyndham Winona MN

5. The Plaza Hotel & Suites Winona

The Plaza Hotel & Suites Winona
Winona
United States
Alison
¥25,732
¥28,723 total
includes taxes & fees
Sep 29 - Sep 30
The Plaza Hotel & Suites Winona

6. Holiday Inn Express & Suites Winona by IHG

Holiday Inn Express & Suites Winona by IHG
Winona
United States
Kristie
¥22,120
¥24,692 total
includes taxes & fees
Oct 18 - Oct 19
Holiday Inn Express & Suites Winona by IHG

7. Fairfield Inn & Suites by Marriott Winona

Fairfield Inn & Suites by Marriott Winona
Winona
United States
Mary
¥22,450
¥25,059 total
includes taxes & fees
Oct 4 - Oct 5
Fairfield Inn & Suites by Marriott Winona

8. Express Suites Riverport Inn & Suites

Express Suites Riverport Inn & Suites
Winona
United States
Sasha
¥18,824
¥21,012 total
includes taxes & fees
Sep 20 - Sep 21
Express Suites Riverport Inn & Suites

9. Prairie Inn and Suites Holmen/La Cross

Prairie Inn and Suites Holmen/La Cross
Holmen
United States
JUANITA
¥9,684
¥10,702 total
includes taxes & fees
Sep 30 - Oct 1
Prairie Inn and Suites Holmen/La Cross

10. Carriage House B&B

Carriage House B&B
Historic Downtown Winona
United States
Mark
¥18,943
¥21,144 total
includes taxes & fees
Sep 21 - Sep 22
Carriage House B&B

11. Best Western Plus LaCrescent / LaCrosse

Best Western Plus LaCrescent / LaCrosse
La Crescent
United States
Leanne
¥13,939
¥15,595 total
includes taxes & fees
Sep 30 - Oct 1
Best Western Plus LaCrescent / LaCrosse

12. Little Bluff Inn

Little Bluff Inn
Downtown Trempealeau
United States
Patricia
¥14,228
¥16,194 total
includes taxes & fees
Oct 4 - Oct 5
Little Bluff Inn

13. The Sawmill Inn

The Sawmill Inn
Houston
United States
Josie
¥22,450
¥23,994 total
includes taxes & fees
Sep 20 - Sep 21
The Sawmill Inn

14. The Rushford Inn

The Rushford Inn
Rushford
United States
Kim
¥22,450
¥24,107 total
includes taxes & fees
Sep 21 - Sep 22
The Rushford Inn

15. Oak Park Inn

Oak Park Inn
Whitehall
United States
Ann
¥21,833
¥23,034 total
includes taxes & fees
Sep 30 - Oct 1
Oak Park Inn
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Stay near popular Fountain City attractions

Rock in the House

7.8/10 (7 reviews)
Learn about the local history of Fountain City with a stop at Rock in the House. Amble around the area's gardens or visit its churches.
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Merrick State Park

You can take time to visit Merrick State Park during your travels to Fountain City.
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Angel Bluff

You can take time to visit Angel Bluff during your travels to Fountain City.
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Agahming Park

After visiting Agahming Park, make a plan to see the other sights and activities in Fountain City.
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Learn more about Fountain City

Perched along the Mississippi River, this charming town offers eagle-watching spots and access to Merrick State Park's scenic waterways. Visit the Fountain City Historical Museum to discover local heritage before exploring nearby Elmer's Auto and Toy Museum with its impressive collection.

See all hotels in Fountain City
A river with a dam, surrounded by greenery and a clear sky.

Top Fountain City Hotel Reviews

Prairie Inn and Suites Holmen/La Cross

Prairie Inn and Suites Holmen/La Cross

10/10 Excellent
"Great place to stay! Friendly staff, clean and quiet"
Leighton 1-night trip
Posted 3 hours ago
Prairie Inn and Suites Holmen/La Cross
Best Western Plus LaCrescent / LaCrosse

Best Western Plus LaCrescent / LaCrosse

8/10 Good
"The breakfast bar was not good at all"
Dennis 1-night trip
Posted 8 hours ago
Best Western Plus LaCrescent / LaCrosse
Super 8 by Wyndham Winona MN

Super 8 by Wyndham Winona MN

10/10 Excellent
"It was raining and cold. We tried to get the heater to come on, just to get the chill out of the room. Finally gave up and just turned the AC off for the night."
Janeal 1-night trip
Posted 20 hours ago
Super 8 by Wyndham Winona MN
Alexander Mansion Bed and Breakfast

Alexander Mansion Bed and Breakfast

10/10 Excellent
"Very knowledgeable about the area and the history house. Very good breakfast and we got to meet some wonderful guests."
Richard 2-night trip
Posted 22 hours ago
Alexander Mansion Bed and Breakfast
The Plaza Hotel & Suites Winona

The Plaza Hotel & Suites Winona

8/10 Good
"This was our third stay at The Plaza. We love being able to stay there when visiting our granddaughter at Winona State. We like the fact that is has a very nice attached restaurant, a great free breakfast, and friendly staff. The only complaint I have had in three visits happened this time. It was this: our bathroom smelled like a wet dog -- a smell that I cannot stand! Obviously, a previous guest had given their pet a bath. Too bad the room hadn't been cleaned up properly and sanitized. I had no idea before this stay that the hotel was "pet friendly" -- which I'm sure is appreciated by some visitors. (I did see one person with a small dog on a leash this time.) I think the hotel needs to have rooms -- like non-smoking rooms -- that are NON-PET rooms! I will guarantee you that I'll ask for one the next time I return."
Graeme 1-night trip
Posted 2 days ago
The Plaza Hotel & Suites Winona
Holiday Inn Express & Suites Winona by IHG

Holiday Inn Express & Suites Winona by IHG

10/10 Excellent
"We enjoyed our stay at The Holiday Inn!"
Kristie 2-night trip
Posted 3 days ago
Holiday Inn Express & Suites Winona by IHG
Little Bluff Inn

Little Bluff Inn

10/10 Excellent
"We loved our time at the Little Bluff Inn. The staff is very friendly, and the room was perfect for us. We got a room with a small kitchenette. We used the free golf cart to go to town for breakfast in the morning. We enjoyed walking around town, and our host was great at giving us a map and some suggestions for dinner, etc. We hope we have occasion to go back."
Daniel 2-night trip
Posted 3 days ago
Little Bluff Inn
Days Inn by Wyndham Winona

Days Inn by Wyndham Winona

8/10 Good
"Breakfast was a little lack luster but overall a comfortable stay for one short night."
Kimberly 1-night trip
Posted 4 days ago
Days Inn by Wyndham Winona
Bluffside cottage with gorgeous views

Bluffside cottage with gorgeous views

10/10 Excellent
"This house is so cute on a hill with a great view of the river! The hosts have all of the essentials provided like coffee/tea, paper towels, soap, shampoo so you don’t need to bring any of that along. We enjoyed sitting out on the deck. There is a fire pit but we ran out of time for that. Enjoyed morning walks in the neighborhood. Few restaurants right downtown. Only 10 minutes from Winona State University which was the reason for our visit during family weekend. It was perfect. The hosts were very responsive during the booking process. During our stay we had a question about the internet and called them. They answered immediately and it turned out to be user error (whoops) but they talked us through. Very clear description and easy check in. Would highly recommend this adorable place!"
Sarah C. 2-night trip
Posted 6 days ago
Bluffside cottage with gorgeous views

More cheap stays in Fountain City

Super 8 by Wyndham Winona MN

Super 8 by Wyndham Winona MN

1025 Sugar Loaf Rd Winona MN
¥8,048
¥9,145 total
Oct 4 - Oct 5
includes taxes & fees
7.6/10 Good! (1,002 reviews)
Super 8 by Wyndham Winona MN
Prairie Inn and Suites Holmen/La Cross

Prairie Inn and Suites Holmen/La Cross

3913 Circle Dr Holmen WI
¥9,684
¥10,702 total
Sep 30 - Oct 1
includes taxes & fees
9/10 Wonderful! (965 reviews)
Prairie Inn and Suites Holmen/La Cross
Days Inn by Wyndham Winona

Days Inn by Wyndham Winona

420 Cottonwood Dr Winona MN
¥10,668
¥11,908 total
Oct 4 - Oct 5
includes taxes & fees
7.6/10 Good! (1,000 reviews)
Days Inn by Wyndham Winona
Best Western Plus LaCrescent / LaCrosse

Best Western Plus LaCrescent / LaCrosse

509 N Chestnut La Crescent MN
¥13,939
¥15,595 total
Sep 30 - Oct 1
includes taxes & fees
9.2/10 Wonderful! (607 reviews)
Best Western Plus LaCrescent / LaCrosse
Little Bluff Inn

Little Bluff Inn

11451 Main St Trempealeau WI
¥14,228
¥16,194 total
Oct 4 - Oct 5
includes taxes & fees
10/10 Exceptional! (162 reviews)
Little Bluff Inn
Holiday Inn Express & Suites Winona by IHG

Holiday Inn Express & Suites Winona by IHG

1128 Homer Rd Winona MN
¥22,120
¥24,692 total
Oct 18 - Oct 19
includes taxes & fees
9.2/10 Wonderful! (959 reviews)
Holiday Inn Express & Suites Winona by IHG

Frequently asked questions

What's the best place to stay in Fountain City?
Riverview Apartment - River Road Historic Home, located 0.4 mi (0.6 km) from the heart of Fountain City, is a top choice for your stay based on our traveler data. Other good choices for your trip to the area are Express Suites Riverport Inn & Suites and The Plaza Hotel & Suites Winona. See all available top hotels, or vacation rentals in Fountain City.
What are some of the best vacation home rentals that Fountain City has to offer?
Farmhouse Apartment - River Road Historic Home: This Fountain City vacation home rental is located on the waterfront and has a balcony, a garden, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. Make the most of the selection of games in this rental home to help you unwind. Some other top choices in Fountain City are Bluffside cottage with gorgeous views and Great River Road - Victorian Historic Home (1898). See all vacation rentals in Fountain City.
If I need to cancel my hotel reservation in Fountain City, will I receive a refund?
Yes, the majority of hotel room reservations are fully refundable if you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, you may still be able to cancel and receive a refund within a 24-hour period of your booking. Filter your search by fully refundable to find flexible hotel deals in Fountain City.
Where can I learn more about changing or cancelling my trip to Fountain City?
For more information about changing or cancelling your trip to Fountain City, click here.
What's the best pet-friendly hotel in Fountain City?
Riverview Apartment - River Road Historic Home is a top dog-friendly B&B, and offers laundry facilities along with in-room kitchens for its human guests. See more pet-friendly hotel accommodations in Fountain City.
Where is the best place to stay near Rock in the House?
The Flyway Lodge - Fountain City, WI is one of the top choices for your stay based on our traveler data, and this lodge offers private decks and free WiFi. It's located just a short 1 mi (1.6 km) from Rock in the House. Other good choices around the area include AmericInn by Wyndham Winona and The Plaza Hotel & Suites Winona.
What are some hotels with pools in Fountain City?
Express Suites Riverport Inn & Suites: Provides full, an indoor pool, and free self parking. Another option with an onsite pool is The Plaza Hotel & Suites Winona. View all hotels with pools in Fountain City.
What's the best accommodation near La Crosse Municipal Airport (LSE)?
Country Inn & Suites by Radisson, La Crosse, WI is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 1.7 mi (2.8 km) from La Crosse Municipal Airport. Other options near the airport are AmericInn by Wyndham La Crosse Riverfront-Conference Center and Motel 6 La Crosse, WI.
What's it like to stay in Fountain City?
Travelers to Fountain City will find plenty to explore and enjoy. In Fountain City, there are 13 hotels and other accommodations to choose from. Find out more about Fountain City.
What are the top places to visit in Fountain City?
Natural beauty is on display at Mississippi River, Angel Bluff, and Agahming Park. A couple of additional sights to add to your agenda are Rock in the House and Merrick State Park. Check out what more to see and do in Expedia's Fountain City guide.
What's the seasonal weather like in Fountain City?
The hottest months are usually July and August with an average temp of 68°F, while the coldest months are January and February with an average of 23°F. The snowiest months in Fountain City are January, April, March, and December, with each month seeing an average of 5 inches of snowfall.

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