Photo by Kayla Schneider

Find hotels in Fountain City, WI from ¥9,500

Start date: Check-in selected.
End date: Check-out
    calendar shield illustration

    Change your mind

    Book hotels with free cancellation
    deals illustration

    Treat yourself

    Sign in to save 10% or more on thousands of hotels
    bed illustration

    Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Compare 242 hotels, room rates, hotel reviews and availability. Most hotels are fully refundable.

Our top choices for Fountain City hotels

Prairie Inn and Suites Holmen/La Cross

2.0 star property
9.0 out of 10, Wonderful, (719)
"Very nice hotel to stay. Everything was wonderful! Very clean and staff was great! "
The price is ¥9,500
¥10,498 total
includes taxes & fees
Sep 8 - Sep 9
Prairie Inn and Suites Holmen/La Cross

Days Inn by Wyndham Winona

2.0 star property
7.8 out of 10, Good, (1000)
"The room was very nice, bed was very comfortable, and the staff friendly."
The price is ¥11,104
¥12,396 total
includes taxes & fees
Oct 5 - Oct 6
Days Inn by Wyndham Winona

Super 8 by Wyndham Winona MN

2.0 star property
7.4 out of 10, Good, (1010)
"Safe, quiet, staff very nice. "
The price is ¥10,660
¥12,112 total
includes taxes & fees
Sep 7 - Sep 8
Super 8 by Wyndham Winona MN

Best Western Plus LaCrescent / LaCrosse

2.5 star property
9.2 out of 10, Wonderful, (474)
"Comfortable stay in a nice facility."
The price is ¥17,190
¥20,387 total
includes taxes & fees
Oct 5 - Oct 6
Best Western Plus LaCrescent / LaCrosse

Draft Horse Inn and Suites

2.5 star property
9.2 out of 10, Wonderful, (346)
"Amazing stay, will be back"
The price is ¥19,069
¥20,118 total
includes taxes & fees
Sep 7 - Sep 8
Draft Horse Inn and Suites

Express Suites Riverport Inn & Suites

3.0 star property
8.4 out of 10, Very Good, (1002)
"Great place and clean"
The price is ¥14,655
¥16,359 total
includes taxes & fees
Sep 9 - Sep 10
Express Suites Riverport Inn & Suites

AmericInn by Wyndham Winona

2.5 star property
9.0 out of 10, Wonderful, (838)
"Looks new or newly renovated, nice property, very clean rooms, great breakfast."
The price is ¥18,521
¥20,674 total
includes taxes & fees
Sep 7 - Sep 8
AmericInn by Wyndham Winona

Big River Escape Riverside Cabins

3.0 star property
9.2 out of 10, Wonderful, (33)
"Beautiful stay"
The price is ¥16,924
¥17,855 total
includes taxes & fees
Sep 14 - Sep 15
Big River Escape Riverside Cabins

Oak Park Inn

2.5 star property
8.6 out of 10, Excellent, (231)
"5 Stars – Charming and Welcoming Beautiful grounds, a charming room, and the kindest owners you could ask for. The atmosphere was peaceful and inviting, and every detail felt thoughtful and personal. If you're looking for somewhere with character, comfort, and genuine heart, this is it."
The price is ¥21,467
¥22,648 total
includes taxes & fees
Sep 9 - Sep 10
Oak Park Inn

Fairfield Inn & Suites by Marriott Winona

2.5 star property
9.4 out of 10, Exceptional, (334)
"Would stay here again."
The price is ¥21,186
¥23,650 total
includes taxes & fees
Sep 7 - Sep 8
Fairfield Inn & Suites by Marriott Winona

White Valley Motel

2.5 star property
6.0 out of 10, (114)
"Safe and quiet. Quaint coffee shop across the way. Good location. "
The price is ¥10,215
¥11,392 total
includes taxes & fees
Sep 5 - Sep 6
White Valley Motel

Carriage House B&B

3.0 star property
9.6 out of 10, Exceptional, (87)
"Jan was very friendly and pleasant to speak with. Breakfasts were exceptionally tasteful and well presented. Other guests were very friendly and pleasant Highly recommend a stay here!"
The price is ¥18,343
¥20,476 total
includes taxes & fees
Sep 7 - Sep 8
Carriage House B&B

Big River Escape Parkside Bungalow

3.0 star property
The price is ¥25,331
¥28,275 total
includes taxes & fees
Sep 7 - Sep 8
Big River Escape Parkside Bungalow

Alexander Mansion Bed and Breakfast

3.5 star property
9.8 out of 10, Exceptional, (468)
"The only place I want to stay in Winona! A gem, an oasis of comfort and charm."
Alexander Mansion Bed and Breakfast

Holiday Inn Express & Suites Winona by IHG

2.5 star property
9.2 out of 10, Wonderful, (871)
"Rooms were very nice and clean "
The price is ¥21,023
¥23,467 total
includes taxes & fees
Sep 7 - Sep 8
Holiday Inn Express & Suites Winona by IHG

The Plaza Hotel & Suites Winona

3.0 star property
8.8 out of 10, Excellent, (1000)
"Overall great location and restaurant connection to the hotel Pool is amazing "
The price is ¥23,688
¥26,442 total
includes taxes & fees
Sep 7 - Sep 8
The Plaza Hotel & Suites Winona

Big River Escape Grandview Manse

3.0 star property
10.0 out of 10, Exceptional, (1)
"It was very roomy and easily accessible. The views were amazing. Would recommend to anyone anytime!!"
Big River Escape Grandview Manse
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Save an average of 15% on thousands of hotels when you're signed in

Check out pet-friendly hotels in Fountain City

Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Learn more about Fountain City

Perched along the Mississippi River, this charming town offers eagle-watching spots and access to Merrick State Park's scenic waterways. Visit the Fountain City Historical Museum to discover local heritage before exploring nearby Elmer's Auto and Toy Museum with its impressive collection.

If you ever get the chance to explore the Great River Road, do it! It's a national scenic byway, and the views overlooking the Mississippi River rock. Near Fountain City is Elmer's Auto & Toy Museum. This guy has an insane collection of the coolest dolls, toys, pedal cars, vehicles, and so much more. And the views from his yard = breathtaking. #MississippiRiver #Museums
Photo by Kayla Schneider
Open Photo by Kayla Schneider

Top Fountain City Hotel Reviews

More cheap stays in Fountain City

More cheap stays in Fountain City

Frequently asked questions

What's the best place to stay in Fountain City?

Express Suites Riverport Inn & Suites, located 8.5 mi (13.7 km) from the heart of Fountain City, is a top choice for your stay based on our traveler data. Other good choices for your trip to the area are Super 8 by Wyndham Winona MN and The Plaza Hotel & Suites Winona. See all available top hotels, or vacation rentals in Fountain City.

What are some of the best vacation home rentals that Fountain City has to offer?

Fountain City Loft, hot tub, river views: This Fountain City vacation home rental is located on a lake and has a balcony, a garden, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, a stovetop, and a microwave. You and your friends and family can relax into your vacation with amenities like a hot tub. Some other top choices in Fountain City are Victorian era Mississippi riverview retreat. and Bluffside cottage with gorgeous views. See all vacation rentals in Fountain City.

If I need to cancel my hotel reservation in Fountain City, will I receive a refund?

Yes, the majority of hotel room reservations are fully refundable if you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, you may still be able to cancel and receive a refund within a 24-hour period of your booking. Filter your search by fully refundable to find flexible hotel deals in Fountain City.

Where can I learn more about changing or cancelling my trip to Fountain City?

For more information about changing or cancelling your trip to Fountain City, click here.

Where is the best place to stay near Rock in the House?

The Flyway Lodge - Fountain City, WI is one of the top choices for your stay based on our traveler data, and this lodge offers private decks and free WiFi. It's located just a short 1 mi (1.6 km) from Rock in the House. Other good choices around the area include AmericInn by Wyndham Winona and The Plaza Hotel & Suites Winona.

What are some hotels with pools in Fountain City?

Express Suites Riverport Inn & Suites: Features full, an indoor pool, and free self parking. The Plaza Hotel & Suites Winona and AmericInn by Wyndham Winona are a couple of other choices that feature an onsite pool. View all hotels with pools in Fountain City.

What's the best accommodation near La Crosse Municipal Airport (LSE)?

Country Inn & Suites by Radisson, La Crosse, WI is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 1.7 mi (2.8 km) from La Crosse Municipal Airport. Other options near the airport are AmericInn by Wyndham La Crosse Riverfront-Conference Center and Motel 6 La Crosse, WI.

What's it like to stay in Fountain City?

Travelers to Fountain City will find plenty to explore and enjoy. In Fountain City, there are 19 hotels and other accommodations to choose from. Find out more about Fountain City.

What are the top places to visit in Fountain City?

The picturesque setting of Mississippi River and Angel Bluff exemplify the area's natural beauty. A couple of additional sights to add to your agenda are Merrick State Park and Rock in the House. Check out what more to see and do in Expedia's Fountain City guide.

What's the seasonal weather like in Fountain City?

The hottest months are usually July and August with an average temp of 68°F, while the coldest months are January and February with an average of 23°F. The snowiest months in Fountain City are January, April, March, and December, with each month seeing an average of 5 inches of snowfall.