The Best Hotels Closest to Boot Key Harbor in Marathon for 2026

Three white herons standing among green foliage.

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Our top choices for Boot Key Harbor hotels

A marina with several docked boats and a row of small, white cabins with blue roofs.

A compact bedroom with two beds, a small bathroom, and a view of the outdoors.

A modern kitchen with white cabinetry, a wooden countertop, and a built-in microwave.

A waterfront property with floating houses connected by a wooden dock.

1. Yacht Haven Marina

2.2 km from Boot Key Harbor

Lauren

￥16,951

￥41,328 total

includes taxes & fees

Oct 26 - Oct 27

An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.

A beach scene with two white chairs, a hammock, and palm trees.

An aerial view of a resort with a large building, a beach, and a pier in the background.

A bar area with wooden chairs, a bar counter, and a variety of bottles and glasses.

2. Isla Bella Beach Resort & Spa

2.4 km from Boot Key Harbor

Clinton

￥32,669

￥46,237 total

includes taxes & fees

Oct 25 - Oct 26

A resort with a pool, lounge chairs, and a view of the ocean.

A hammock tied between palm trees on a rocky beach with a view of the sea.

A dock with boats, a wooden pier, and a distant shoreline with palm trees.

A modern kitchen with dark countertops, stainless steel appliances, and wooden cabinets.

3. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

1.2 km from Boot Key Harbor

Arianna

￥28,348

￥36,343 total

includes taxes & fees

Oct 29 - Oct 30

A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.

A waterfront dock with boats and a sunset.

An aerial view of a coastal area with a marina, several boats, and a variety of buildings including a large resort with a pool and landscaped areas.

A beach with a wooden pier, palm trees, and a clear blue sky.

4. Captain Pips Marina & Hideaway

1.2 km from Boot Key Harbor

michael

￥15,550

￥26,412 total

includes taxes & fees

Oct 22 - Oct 23

Two hammocks on a sandy beach with a clear blue sky and turquoise water.

An aerial view of a coastal resort with a marina, palm trees, and a large building complex.

A clear blue pool with white lounge chairs and palm trees, overlooking a calm sea.

A poolside area with lounge chairs, blue umbrellas, and a fire pit.

5. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.8 km from Boot Key Harbor

amy

￥22,699

￥31,085 total

includes taxes & fees

Oct 27 - Oct 28

A hotel room with two beds, each with a wooden headboard, white bedding, and a bedside table with a lamp.

A kitchen with wooden cabinets, a stainless steel refrigerator, a granite countertop, a sink, a microwave, a stove, and a clock.

A spacious living room with a wooden floor, a sofa, a TV, a cabinet, and a sliding glass door leading to a balcony.

A dining area with a wooden table and chairs, a chandelier, and a kitchen in the background.

6. Knight's Key Suites

2.7 km from Boot Key Harbor

Brandy

￥12,338

￥17,288 total

includes taxes & fees

Oct 27 - Oct 28

A cozy cabin interior with a leather sofa, wooden dining table, and chairs.

7. Aqua Lodges at 47th Street Gulfside

1.9 km from Boot Key Harbor

Lauren

￥14,578

￥38,659 total

includes taxes & fees

Oct 29 - Oct 30

A bar area with a long counter, multiple stools, and a view of the marina with boats.

A gym with kettlebells, medicine balls, and a wooden bench.

A pool area with lounge chairs and umbrellas, surrounded by palm trees and a large tree in the background.

A well-maintained lawn with outdoor seating and a hammock.

8. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

1 km from Boot Key Harbor

Rick

￥23,232

￥32,092 total

includes taxes & fees

Nov 9 - Nov 10

An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.

A bedroom with a bed, bedside tables, a TV, and a sliding glass door to the outside.

A food truck parked in a lush garden with a brick pathway, surrounded by various plants and a white fence.

A thatched-roof bar area with a large island counter, bar stools, and a television screen.

9. Tropical Cottages

2.9 km from Boot Key Harbor

Aaron

￥15,670

￥17,630 total

includes taxes & fees

Oct 26 - Oct 27

A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.

A table with breakfast items, a basket, and a view of a parking lot and buildings.

A hotel entrance with a covered walkway, palm trees, and a clear blue sky.

A buffet setup with various food items and condiments.

10. Skipjack Resort & Marina

1.7 km from Boot Key Harbor

Justin

￥21,939

￥31,101 total

includes taxes & fees

Oct 25 - Oct 26

Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.

An aerial view of a marina with multiple boats docked, surrounded by a sandy beach and palm trees.

A beach with lounge chairs, palm trees, and a string of lights.

A clear view of a swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a clear sky.

11. Banana Bay Resort & Marina

1.6 km from Boot Key Harbor

Alex

￥20,031

￥28,766 total

includes taxes & fees

Nov 3 - Nov 4

A swimming pool surrounded by palm trees and lounge chairs.

An aerial view of a resort with a central swimming pool, surrounded by lush greenery and palm trees, with a view of the ocean.

A beach scene with a wooden deck, palm trees, and a gazebo-like structure.

A wooden deck with blue chairs overlooking a beach with palm trees and the ocean.

12. Tranquility Bay Beachfront Hotel and Resort

0.7 km from Boot Key Harbor

Stuart

￥32,796

￥47,058 total

includes taxes & fees

Nov 15 - Nov 16

A beach with palm trees, a sandy path, and beach chairs.

A compact bedroom with two beds, a small bathroom, and a window with a view of greenery.

A spacious living area with a gray sectional sofa, wooden beams, and a ceiling fan.

13. Aqua Lodge Rentals At Coconut Cay

3.9 km from Boot Key Harbor

Susan

￥13,794

￥39,329 total

includes taxes & fees

Oct 26 - Oct 27

A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.

A wooden pier leading to a dock with boats, a clear sky, and calm water.

A view from a balcony overlooking a beach with palm trees, a wooden deck, and a blue picnic table.

A beach with palm trees, lounge chairs, and a picnic table.

14. Seascape Resort & Marina

4.1 km from Boot Key Harbor

PAOLA

￥17,527

￥27,679 total

includes taxes & fees

Oct 26 - Oct 27

A wooden deck with a pool and chairs overlooking a beach with palm trees.

A beach with a wooden walkway leading to the water, palm trees, and a clear sky.

A pool area with palm trees and a view of the ocean.

A bar area with stools, a counter, and hanging lanterns.

15. Grassy Flats Resort & Beach Club

15.6 km from Boot Key Harbor

Tiffany

￥30,495

￥41,903 total

includes taxes & fees

Nov 19 - Nov 20

A wooden dock leading to a row of boats, with a thatched-roof building and palm trees in the background.

Two bicycles parked on a sandy beach with the ocean in the background.

A bedroom with a bed, two bedside lamps, a glass table, and a view of a balcony with palm trees.

A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.

16. Bonefish Bay Motel

8.1 km from Boot Key Harbor

Billy

￥14,907

￥16,769 total

includes taxes & fees

Oct 29 - Oct 30

A bar area with a long counter, bar stools, and a view of the water.

A balcony with a view of the ocean, a round table, and two chairs.

A waterfront property with a large building, a smaller structure with a thatched roof, and several boats docked.

A balcony with a view of a body of water, a pool, and outdoor seating.

17. Fairfield Inn & Suites by Marriott Marathon Florida Keys

8.3 km from Boot Key Harbor

Andrew

￥21,256

￥23,913 total

includes taxes & fees

Oct 27 - Oct 28

Three colorful drinks on a table with a thatched roof and outdoor seating.

A bar area with wicker chairs and a thatched roof, overlooking a body of water with boats.

A modern kitchen with a central island, various appliances, and hanging pendant lights.

A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.

18. Hampton Inn Marathon - Florida Keys

8.5 km from Boot Key Harbor

Linda

￥20,667

￥23,251 total

includes taxes & fees

Oct 28 - Oct 29

A pool area with lounge chairs and umbrellas, a thatched-roof structure, and a view of the ocean.

A spacious living area with a view of the ocean, a balcony with a pool, and a staircase leading to another level.

A beach with a palm tree, clear blue water, and a bridge in the distance.

A covered outdoor seating area with a view of the ocean, a small table, and two chairs with cushions.

19. Glunz Ocean Beach Hotel & Resort

8.3 km from Boot Key Harbor

Judy

￥21,966

￥31,527 total

includes taxes & fees

Oct 26 - Oct 27

A tropical resort with a swimming pool, palm trees, and a view of the ocean.

A beach view with palm trees, a hammock, and a chair by the water.

A bedroom with a bed, nightstands, a TV, a ceiling fan, and a view of the ocean.

An aerial view of a resort with a swimming pool, palm trees, and a beach area.

20. Gulf View Waterfront Resort

16.4 km from Boot Key Harbor

￥15,855

￥17,837 total

includes taxes & fees

Oct 29 - Oct 30

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Compare top hotels near Boot Key Harbor

Yacht Haven Marina 2.2 km from Boot Key Harbor View	Isla Bella Beach Resort & Spa 2.4 km from Boot Key Harbor View	Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort 1.2 km from Boot Key Harbor View	Captain Pips Marina & Hideaway 1.2 km from Boot Key Harbor View	Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys 0.8 km from Boot Key Harbor View
9.6 Exceptional 373 reviews	9.2 Wonderful 1,292 reviews	9.2 Wonderful 147 reviews	9.0 Wonderful 1,004 reviews	9.0 Wonderful 1,001 reviews
￥16,951 ￥41,328 total includes taxes & fees Oct 26 - Oct 27	￥32,669 ￥46,237 total includes taxes & fees Oct 25 - Oct 26	￥28,348 ￥36,343 total includes taxes & fees Oct 29 - Oct 30	￥15,550 ￥26,412 total includes taxes & fees Oct 22 - Oct 23	￥22,699 ￥31,085 total includes taxes & fees Oct 27 - Oct 28

Top Boot Key Harbor Hotel Reviews

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

10/10 Excellent

"Beautiful infinity pool. Very helpful front desk staff at check in and check out. Thank you for a great stay!"

Tranquility Bay Beachfront Hotel and Resort

10/10 Excellent

"Nice layout"

Kingsail Resort

8/10 Good

"service to the room was not up to the standards of the rest of the resort"

Captain Pips Marina & Hideaway

10/10 Excellent

"Just the right compromise between price, location, amenities, room. The "full" kitchen was great but could have used more lighting. A good amount of space in the suite. We checked out the free bikes to ride the Old 7 Mile Bridge to Pigeon Key for snorkeling. The bikes were dated but acceptable (esp. for free). Although we could have spent more (or less) money, Pip's was a good choice."

Isla Bella Beach Resort & Spa

10/10 Excellent

"Amazing resort. Room was above expectations, everything was so clean, staff so friendly. Great accommodations & dining options. We will be back!"

Yacht Haven Marina

10/10 Excellent

"It was fantastic!! Loved living on the boat for a few days. Cross off my bucket list. Will do this again."

Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

10/10 Excellent

"Great location!!"

Deep Water Canal, Swim Spa Pool, Kayaks, Walk to Ocean Front Bars & Restaurants!

8/10 Good

"Very well equipped house just need a couple of improvements like new houses and water connections on front of the house for washing the boat trailer , in general is a great place and location."

Bob's Harbor View is a charming 2-bedroom, 2-bathroom retreat nestled near the picturesque Seven Mile Bridge.

10/10 Excellent

"Clean house, fast response."

Other attractions near Boot Key Harbor

The Turtle Hospital

9.2/10 (946 reviews)

Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's seaside, or simply savor its seafood restaurants.

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A golf course with a curved path, palm trees, and a clear blue sky.

Florida Keys Country Club

8.2/10 (111 reviews)

Play a round of golf in Marathon at Florida Keys Country Club, and enjoy other activities such as running. Stroll along the area's marina, or simply savor its seafood restaurants.

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A beach with clear turquoise water, white sand, and palm trees.

Sombrero Beach

9.0/10 (2,464 reviews)

Play beach games; go swimming, kayaking or snorkeling; and lounge in the sun at one of Marathon’s most visited beaches.

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Crane Point Museum and Nature Center

8.6/10 (54 reviews)

You can spend an afternoon exploring the galleries in Crane Point Museum and Nature Center in Marathon. Discover the area's beautiful sunsets, or seek out its jogging trails.

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A tall red lighthouse on a pier in the ocean.

Vaca Key

8.8/10 (411 reviews)

Commune with nature and explore the great outdoors at Vaca Key during your travels in Marathon. Stroll along the seaside or discover the area's beautiful sunsets.

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A bridge over turquoise water with a clear sky.

Seven Mile Bridge

9.4/10 (3,266 reviews)

Walk, jog, cycle or drive across one of the longest bridges in North America to take in the scenic ocean views it provides.

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Shady Palm Art Gallery

You can spend time browsing the exhibits at Shady Palm Art Gallery during your trip to Marathon. Stroll along the area's seaside, or simply savor its seafood restaurants.

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Marathon Air Museum

You can spend an afternoon studying the exhibits at Marathon Air Museum during your travels in Marathon.

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Frequently asked questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 216 hotels and other accommodations you'll find within a mile.

What's the best hotel to stay near Boot Key Harbor?

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 4 outdoor pools. It's located just a short 0.6 mi (1 km) from Boot Key Harbor. Other good choices within a short distance include Tranquility Bay Beachfront Hotel and Resort and Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys.

How many hotels are there close to Boot Key Harbor?

Expedia has 216 hotels and other accommodations within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.

Where can I learn more about changing or cancelling my trip in the area near Boot Key Harbor?

To find more details about rescheduling or cancelling your stay near Boot Key Harbor, go to https://www.expedia.com/service/.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

Find hotels near Boot Key Harbor, Marathon from ￥16,769

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Property class

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Our top choices for Boot Key Harbor hotels

1. Yacht Haven Marina

2. Isla Bella Beach Resort & Spa

3. Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

4. Captain Pips Marina & Hideaway

5. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

6. Knight's Key Suites

7. Aqua Lodges at 47th Street Gulfside

8. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

9. Tropical Cottages

10. Skipjack Resort & Marina

11. Banana Bay Resort & Marina

12. Tranquility Bay Beachfront Hotel and Resort

13. Aqua Lodge Rentals At Coconut Cay

14. Seascape Resort & Marina

15. Grassy Flats Resort & Beach Club

16. Bonefish Bay Motel

17. Fairfield Inn & Suites by Marriott Marathon Florida Keys

18. Hampton Inn Marathon - Florida Keys

19. Glunz Ocean Beach Hotel & Resort

20. Gulf View Waterfront Resort

Compare top hotels near Boot Key Harbor

Yacht Haven Marina

Isla Bella Beach Resort & Spa

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Captain Pips Marina & Hideaway

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Top Boot Key Harbor Hotel Reviews

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Tranquility Bay Beachfront Hotel and Resort

Kingsail Resort

Captain Pips Marina & Hideaway

Isla Bella Beach Resort & Spa

Yacht Haven Marina

Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

Deep Water Canal, Swim Spa Pool, Kayaks, Walk to Ocean Front Bars & Restaurants!

Bob's Harbor View is a charming 2-bedroom, 2-bathroom retreat nestled near the picturesque Seven Mile Bridge.

Other attractions near Boot Key Harbor

The Turtle Hospital

Florida Keys Country Club

Sombrero Beach

Crane Point Museum and Nature Center

Vaca Key

Seven Mile Bridge

Shady Palm Art Gallery

Marathon Air Museum

Frequently asked questions